Wall clock time and date at job start Sat Apr 11 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21282 * 119.99544 * 119.99884 * 4 2 1 6 6 N 1.34774 * 120.00011 * 300.00244 * 4 2 1 7 7 C 1.47424 * 125.64602 * 0.02562 * 6 4 2 8 8 C 1.54916 * 104.83101 * 204.08964 * 7 6 4 9 9 C 1.55157 * 101.58004 * 322.99394 * 8 7 6 10 10 H 1.08994 * 110.72163 * 276.95556 * 9 8 7 11 11 N 1.46507 * 110.71689 * 153.86062 * 9 8 7 12 12 C 1.34777 * 119.99455 * 86.45734 * 11 9 8 13 13 O 1.21280 * 120.00329 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99579 * 179.97438 * 12 11 9 15 15 S 1.81002 * 109.47117 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99985 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99966 * 0.02562 * 16 15 14 18 18 C 1.38801 * 119.99577 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00329 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99581 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47160 * 60.00047 * 20 18 16 22 22 H 1.48497 * 109.46913 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46947 * 300.00087 * 20 18 16 24 24 C 1.47022 * 125.64770 * 179.71711 * 6 4 2 25 25 H 1.08993 * 109.88311 * 59.55544 * 24 6 4 26 26 C 1.53009 * 109.87731 * 298.39081 * 24 6 4 27 27 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 28 28 C 1.53009 * 117.50103 * 128.74475 * 27 2 1 29 29 C 1.53005 * 117.50008 * 60.08627 * 27 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.08991 * 110.37069 * 322.93244 * 7 6 4 34 34 H 1.09002 * 110.36724 * 85.25968 * 7 6 4 35 35 H 1.08998 * 110.99862 * 81.06745 * 8 7 6 36 36 H 1.08991 * 111.00705 * 204.88377 * 8 7 6 37 37 H 0.96998 * 120.00108 * 266.45457 * 11 9 8 38 38 H 1.09007 * 109.47226 * 299.99431 * 14 12 11 39 39 H 1.08997 * 109.47247 * 59.99646 * 14 12 11 40 40 H 0.96998 * 119.99676 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.46567 * 61.45835 * 26 24 6 42 42 H 1.09005 * 109.46760 * 181.45384 * 26 24 6 43 43 H 1.08995 * 109.47174 * 301.45573 * 26 24 6 44 44 H 1.09002 * 115.55450 * 274.41732 * 27 2 1 45 45 H 1.09000 * 117.49878 * 0.02562 * 28 27 2 46 46 H 1.08997 * 117.49785 * 145.02207 * 28 27 2 47 47 H 1.08992 * 117.50188 * 214.98232 * 29 27 2 48 48 H 1.09002 * 117.49714 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8705 0.9317 2.7336 8 6 1.2941 1.3917 4.1509 9 6 1.5386 0.0330 4.8592 10 1 0.6013 -0.3842 5.2272 11 7 2.5012 0.1847 5.9532 12 6 2.0764 0.5518 7.1784 13 8 0.8974 0.7570 7.3752 14 6 3.0664 0.7072 8.3039 15 16 2.1946 1.2053 9.8099 16 6 3.5518 1.3097 10.9287 17 1 4.5523 1.0906 10.5860 18 6 3.3352 1.6747 12.2503 19 7 2.1159 1.9423 12.6678 20 14 4.7742 1.7861 13.4363 21 1 5.7471 2.7928 12.9409 22 1 4.2806 2.1931 14.7764 23 1 5.4387 0.4618 13.5341 24 6 2.1214 -0.8465 3.7328 25 1 3.2091 -0.8594 3.8002 26 6 1.5731 -2.2706 3.8444 27 6 2.0400 -0.7212 -1.2491 28 6 3.0764 0.0040 -2.1100 29 6 1.6375 -0.1484 -2.6096 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.0687 1.7175 2.0047 34 1 -0.1852 0.6605 2.7227 35 1 2.2092 1.9826 4.1126 36 1 0.4926 1.9477 4.6372 37 1 3.4442 0.0208 5.7957 38 1 3.5743 -0.2421 8.4748 39 1 3.7997 1.4693 8.0401 40 1 1.9647 2.1977 13.5913 41 1 1.9805 -2.8808 3.0383 42 1 1.8626 -2.6971 4.8049 43 1 0.4860 -2.2483 3.7695 44 1 2.1254 -1.8046 -1.1646 45 1 3.3951 0.9948 -1.7862 46 1 3.8432 -0.6023 -2.5921 47 1 1.4583 -0.8548 -3.4200 48 1 1.0096 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685167191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:35 Heat of formation + Delta-G solvation = -51.527889 kcal Electronic energy + Delta-G solvation = -27098.959378 eV Core-core repulsion = 23280.682479 eV Total energy + Delta-G solvation = -3818.276899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94463 -39.45025 -38.15503 -37.13132 -34.34889 -32.88504 -32.44951 -31.49736 -30.74602 -28.88446 -25.84959 -25.50903 -25.29797 -23.31161 -22.67755 -21.88480 -20.69069 -20.39794 -19.12211 -17.88190 -17.59630 -16.92258 -16.24342 -16.09611 -15.74597 -15.13758 -15.00665 -14.82201 -14.65855 -14.37737 -14.07649 -13.92864 -13.58073 -13.41328 -13.30604 -12.88335 -12.73668 -12.63260 -12.51173 -12.40214 -12.19381 -12.01257 -11.87850 -11.70290 -11.41340 -11.26175 -11.07345 -11.05336 -11.01995 -10.78606 -10.74460 -10.41094 -9.94798 -9.84605 -9.49045 -9.09540 -9.04869 -8.93728 -8.27707 -6.52899 -6.23775 -3.94688 2.34067 2.46899 2.99185 3.02029 3.22266 3.26351 3.29639 3.41190 3.65933 3.95348 4.16538 4.18441 4.21421 4.39385 4.47784 4.65155 4.75183 4.77325 4.80971 4.85788 4.96176 5.01265 5.06548 5.11152 5.11534 5.22144 5.23636 5.30298 5.37749 5.39997 5.47899 5.52302 5.60356 5.70016 5.71764 5.72728 5.78375 5.84592 5.89111 5.92019 6.01983 6.06918 6.10529 6.52763 7.17835 7.57092 7.59910 7.87704 8.32915 8.51683 9.21619 10.83549 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.001846 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.503691 B =15163.816252 C =15359.188139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 H 0.096 0.904 4 C 0.538 3.462 5 O -0.534 6.534 6 N -0.613 5.613 7 C 0.099 3.901 8 C -0.148 4.148 9 C 0.142 3.858 10 H 0.106 0.894 11 N -0.730 5.730 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.131 3.869 25 H 0.080 0.920 26 C -0.161 4.161 27 C -0.135 4.135 28 C -0.178 4.178 29 C -0.177 4.177 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.400 0.600 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -2.908 -28.917 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 H 0.114 0.886 4 C 0.326 3.674 5 O -0.410 6.410 6 N -0.348 5.348 7 C -0.024 4.024 8 C -0.187 4.187 9 C 0.035 3.965 10 H 0.124 0.876 11 N -0.385 5.385 12 C 0.323 3.677 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.027 3.973 25 H 0.098 0.902 26 C -0.220 4.220 27 C -0.154 4.154 28 C -0.215 4.215 29 C -0.214 4.214 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.283 -3.076 -28.556 28.908 hybrid contribution 2.794 -0.133 0.496 2.840 sum -0.489 -3.209 -28.060 28.247 Atomic orbital electron populations 1.21907 0.92475 1.03201 1.03110 1.20804 0.97573 0.99828 0.91429 0.88643 1.20224 0.79768 0.84345 0.83017 1.90690 1.37949 1.26369 1.85983 1.48502 1.51838 1.29512 1.04972 1.22491 0.95166 0.87481 0.97302 1.23276 1.03531 0.97898 0.93968 1.21899 0.93987 0.94601 0.85981 0.87641 1.45965 1.10566 1.72575 1.09364 1.20321 0.89653 0.75328 0.82444 1.90702 1.17624 1.48005 1.82454 1.23540 1.01843 1.05163 0.99935 1.85377 1.11903 1.88680 0.97243 1.22827 0.94522 1.54269 0.96891 0.90957 1.24987 0.96618 0.94544 0.97375 1.70002 1.19877 1.43158 1.17234 0.86227 0.81287 0.78713 0.79296 1.19944 1.20794 1.19926 1.21681 0.99650 0.93434 0.82497 0.90155 1.22129 1.01376 0.95337 1.03117 1.22045 1.03555 1.00114 0.89662 1.23028 0.92582 1.01879 1.03982 1.22987 0.98174 1.03235 0.97040 0.91894 0.91261 0.91318 0.90132 0.90521 0.90030 0.88705 0.76592 0.89117 0.89154 0.92108 0.91007 0.91208 0.92227 0.86614 0.88885 0.88708 0.88657 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 2 C -0.08 -0.54 2.23 -91.77 -0.20 -0.74 16 3 H 0.10 0.58 7.61 -51.93 -0.39 0.18 16 4 C 0.54 5.48 7.01 -10.98 -0.08 5.40 16 5 O -0.53 -7.30 14.69 5.56 0.08 -7.22 16 6 N -0.61 -5.55 3.06 -163.01 -0.50 -6.05 16 7 C 0.10 0.69 5.13 -2.53 -0.01 0.68 16 8 C -0.15 -1.34 6.77 -24.58 -0.17 -1.50 16 9 C 0.14 1.52 2.76 -66.09 -0.18 1.34 16 10 H 0.11 1.30 7.40 -51.93 -0.38 0.91 16 11 N -0.73 -8.98 5.21 -52.02 -0.27 -9.25 16 12 C 0.54 9.33 7.85 -10.99 -0.09 9.24 16 13 O -0.51 -10.88 15.59 5.56 0.09 -10.79 16 14 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 15 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 16 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 17 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 20 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.13 1.30 3.21 -66.94 -0.21 1.08 16 25 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 26 C -0.16 -1.65 9.11 37.16 0.34 -1.31 16 27 C -0.14 -1.04 4.75 -90.62 -0.43 -1.47 16 28 C -0.18 -1.20 10.18 -26.69 -0.27 -1.47 16 29 C -0.18 -1.02 9.74 -26.69 -0.26 -1.28 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.30 7.29 -51.93 -0.38 -0.08 16 32 H 0.07 0.33 4.99 -51.93 -0.26 0.07 16 33 H 0.08 0.42 7.36 -51.93 -0.38 0.04 16 34 H 0.08 0.47 7.07 -51.93 -0.37 0.10 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 3.94 8.32 -40.82 -0.34 3.60 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 41 H 0.07 0.83 6.89 -51.93 -0.36 0.47 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.12 1.10 7.47 -51.93 -0.39 0.71 16 45 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.45 7.61 -51.93 -0.40 0.05 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -34.73 399.09 -9.72 -44.45 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.81 Total: 1.64 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.82 Total: -6.08 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.04 Total: -40.42 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.73 -9.72 -44.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685167191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.074 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds