Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.56282 * 2 1 4 4 C 1.52999 * 117.50008 * 145.68542 * 2 1 3 5 5 C 1.53000 * 60.00076 * 107.49041 * 4 2 1 6 6 H 1.08996 * 117.49922 * 252.48339 * 5 4 2 7 7 C 1.50706 * 117.49444 * 107.48988 * 5 4 2 8 8 O 1.21279 * 119.99788 * 291.38981 * 7 5 4 9 9 N 1.34780 * 119.99583 * 111.39555 * 7 5 4 10 10 C 1.46922 * 120.63256 * 359.71357 * 9 7 5 11 11 C 1.52754 * 109.00918 * 233.58420 * 10 9 7 12 12 C 1.53040 * 109.38538 * 305.58994 * 11 10 9 13 13 C 1.53006 * 109.45920 * 181.25749 * 12 11 10 14 14 N 1.46502 * 109.46865 * 64.93546 * 13 12 11 15 15 C 1.34776 * 119.99739 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00370 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99905 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47339 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00154 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00102 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99930 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00349 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00111 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47004 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47552 * 119.99493 * 23 21 19 26 26 H 1.48501 * 109.47180 * 239.99962 * 23 21 19 27 27 C 1.53043 * 109.53538 * 61.24142 * 12 11 10 28 28 C 1.46928 * 120.62613 * 179.97438 * 9 7 5 29 29 H 1.09001 * 109.46826 * 205.68949 * 1 2 3 30 30 H 1.08998 * 109.47105 * 325.69218 * 1 2 3 31 31 H 1.09003 * 109.46603 * 85.69110 * 1 2 3 32 32 H 1.09004 * 117.50109 * 0.02562 * 4 2 1 33 33 H 1.08998 * 117.52032 * 214.97380 * 4 2 1 34 34 H 1.08995 * 109.58503 * 353.42506 * 10 9 7 35 35 H 1.09003 * 109.58277 * 113.84789 * 10 9 7 36 36 H 1.09005 * 109.56524 * 185.55220 * 11 10 9 37 37 H 1.08998 * 109.35834 * 65.50343 * 11 10 9 38 38 H 1.08994 * 109.46170 * 301.22026 * 12 11 10 39 39 H 1.09000 * 109.46841 * 184.92929 * 13 12 11 40 40 H 1.08997 * 109.47489 * 304.93480 * 13 12 11 41 41 H 0.96998 * 119.99899 * 359.97438 * 14 13 12 42 42 H 1.09000 * 109.47028 * 300.00021 * 17 15 14 43 43 H 1.09007 * 109.47126 * 59.99612 * 17 15 14 44 44 H 0.97000 * 120.00392 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.49460 * 178.68277 * 27 12 11 46 46 H 1.08993 * 109.50124 * 58.58688 * 27 12 11 47 47 H 1.09004 * 109.58386 * 246.15446 * 28 9 7 48 48 H 1.08999 * 109.58956 * 6.57910 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6116 -1.8588 -1.2682 7 6 3.5294 -0.7811 -1.4607 8 8 3.9719 0.3464 -1.4009 9 7 4.1937 -1.7303 -2.1495 10 6 3.6733 -3.1021 -2.2258 11 6 4.7630 -4.0734 -1.7759 12 6 6.0291 -3.8343 -2.6017 13 6 7.1118 -4.8272 -2.1739 14 7 6.6835 -6.1888 -2.5040 15 6 7.4833 -7.2350 -2.2172 16 8 8.5579 -7.0492 -1.6864 17 6 7.0430 -8.6355 -2.5573 18 16 8.3243 -9.8101 -2.0526 19 6 7.5685 -11.3211 -2.5529 20 1 6.5936 -11.3093 -3.0176 21 6 8.2255 -12.5265 -2.3490 22 7 9.4135 -12.5410 -1.7822 23 14 7.4246 -14.1284 -2.8801 24 1 6.1002 -13.8420 -3.4876 25 1 8.2903 -14.8081 -3.8769 26 1 7.2462 -15.0086 -1.6974 27 6 6.5279 -2.4058 -2.3716 28 6 5.4550 -1.4141 -2.8334 29 1 -0.3633 -0.9261 0.4455 30 1 -0.3633 0.8489 0.5792 31 1 -0.3633 0.0772 -1.0248 32 1 1.6113 -1.8587 1.2681 33 1 3.1716 -0.8755 1.2684 34 1 2.8057 -3.2007 -1.5733 35 1 3.3879 -3.3280 -3.2533 36 1 4.4216 -5.0983 -1.9220 37 1 4.9804 -3.9089 -0.7206 38 1 5.8050 -3.9748 -3.6590 39 1 8.0400 -4.6011 -2.6988 40 1 7.2735 -4.7478 -1.0990 41 1 5.8243 -6.3373 -2.9289 42 1 6.1149 -8.8620 -2.0326 43 1 6.8812 -8.7146 -3.6324 44 1 9.8728 -13.3834 -1.6400 45 1 7.4426 -2.2436 -2.9418 46 1 6.7287 -2.2569 -1.3107 47 1 5.3175 -1.4997 -3.9114 48 1 5.7627 -0.3992 -2.5817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687309385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -63.545226 kcal Electronic energy + Delta-G solvation = -26474.476881 eV Core-core repulsion = 22655.678871 eV Total energy + Delta-G solvation = -3818.798010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85690 -39.41328 -38.35945 -36.98801 -35.13393 -32.87706 -32.44731 -31.62177 -29.71381 -29.18062 -27.24723 -25.51625 -24.81501 -23.80699 -22.74688 -21.38077 -20.73310 -20.26317 -19.17489 -18.00604 -17.73605 -16.54300 -16.23458 -16.07522 -15.67101 -15.36015 -14.99261 -14.87625 -14.82414 -14.45217 -14.20895 -13.83092 -13.71696 -13.65492 -13.54287 -13.15353 -13.03114 -12.89183 -12.58914 -12.53413 -12.44908 -11.88665 -11.79400 -11.69231 -11.28052 -11.09009 -11.04043 -11.02136 -10.97202 -10.82908 -10.76403 -10.48243 -10.09668 -9.82545 -9.42993 -9.09793 -9.06682 -8.90762 -8.25010 -6.52021 -6.23678 -3.94301 2.09859 2.50945 3.01683 3.08180 3.19868 3.26708 3.31053 3.35326 3.69321 3.95504 4.18369 4.20360 4.29404 4.29989 4.34375 4.46712 4.58563 4.64773 4.82730 4.85486 4.93327 5.03423 5.10824 5.11606 5.13717 5.22800 5.26087 5.29188 5.30767 5.36437 5.40039 5.47689 5.57425 5.58705 5.60447 5.63135 5.69292 5.82174 5.85096 5.87123 6.01270 6.10974 6.12240 6.58903 6.97471 7.57821 7.67627 7.79519 8.33373 8.59443 9.21762 10.83794 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.001753 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.912575 B =15971.476632 C =16830.698804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.195 4.195 6 H 0.124 0.876 7 C 0.546 3.454 8 O -0.543 6.543 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.132 4.132 12 C -0.098 4.098 13 C 0.127 3.873 14 N -0.739 5.739 15 C 0.531 3.469 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.127 4.127 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.025 24.177 -0.584 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.215 4.215 6 H 0.142 0.858 7 C 0.335 3.665 8 O -0.421 6.421 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.171 4.171 12 C -0.117 4.117 13 C 0.002 3.998 14 N -0.394 5.394 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.165 4.165 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.822 24.985 0.392 29.576 hybrid contribution -2.080 -1.582 -1.272 2.906 sum -17.902 23.403 -0.880 29.478 Atomic orbital electron populations 1.21408 0.92118 1.02372 1.02225 1.22392 0.95294 0.95044 1.01336 0.86543 1.23117 1.03222 1.01569 0.90513 1.22334 0.97794 1.05410 0.96006 0.85777 1.19695 0.84692 0.84297 0.77821 1.90684 1.68717 1.21024 1.61666 1.48035 1.23932 1.10200 1.51970 1.21724 0.97105 0.80628 1.02129 1.21940 0.94841 0.99423 1.00858 1.21391 0.95002 0.94741 1.00604 1.21295 0.96798 0.80743 1.00917 1.46011 1.22419 1.06002 1.64938 1.20310 0.84203 0.86116 0.77692 1.90708 1.21852 1.85587 1.41014 1.23529 1.06458 0.95632 1.04782 1.85420 1.21448 0.96826 1.79746 1.22907 1.06820 0.92133 1.46502 0.90876 1.24996 0.94867 0.98980 0.94768 1.70025 1.12793 1.27145 1.40287 0.86116 0.79162 0.81808 0.78394 1.19626 1.20556 1.20567 1.21901 0.98375 0.93394 1.02864 1.21623 0.82821 1.00301 0.96263 0.92244 0.91588 0.91944 0.87608 0.88240 0.89311 0.91106 0.90112 0.90910 0.90134 0.91475 0.91599 0.76942 0.89275 0.89263 0.92219 0.90012 0.91000 0.91300 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.19 37.16 0.38 -0.20 16 2 C -0.12 -0.82 5.92 -90.62 -0.54 -1.35 16 3 H 0.12 0.97 7.67 -51.93 -0.40 0.57 16 4 C -0.15 -0.90 9.88 -26.73 -0.26 -1.16 16 5 C -0.19 -1.33 4.68 -91.77 -0.43 -1.76 16 6 H 0.12 0.61 6.83 -51.93 -0.35 0.26 16 7 C 0.55 5.24 7.48 -10.98 -0.08 5.16 16 8 O -0.54 -7.19 15.67 5.56 0.09 -7.10 16 9 N -0.61 -4.70 2.98 -173.01 -0.52 -5.21 16 10 C 0.11 0.58 6.27 -3.94 -0.02 0.55 16 11 C -0.13 -0.82 5.23 -26.84 -0.14 -0.96 16 12 C -0.10 -0.69 2.19 -90.57 -0.20 -0.89 16 13 C 0.13 1.34 5.07 -4.04 -0.02 1.32 16 14 N -0.74 -9.01 5.27 -60.29 -0.32 -9.33 16 15 C 0.53 9.57 7.85 -10.99 -0.09 9.48 16 16 O -0.52 -11.61 15.86 5.56 0.09 -11.53 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C -0.13 -0.89 5.36 -26.59 -0.14 -1.03 16 28 C 0.11 0.84 6.44 -3.69 -0.02 0.81 16 29 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.11 0.47 8.05 -51.93 -0.42 0.05 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.38 5.68 -51.93 -0.29 0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.46 7.15 -51.93 -0.37 0.08 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.60 7.65 -40.82 -0.31 3.29 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.84 7.00 -51.93 -0.36 0.48 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -36.33 402.03 -10.21 -46.55 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.96 Total: -0.85 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.15 Total: -5.64 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.10 Total: -39.80 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.33 -10.21 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687309385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.000 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds