Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.55474 * 2 1 4 4 C 1.53002 * 117.50315 * 145.67338 * 2 1 3 5 5 C 1.53000 * 59.99990 * 107.48701 * 4 2 1 6 6 H 1.08997 * 117.49478 * 107.49190 * 5 4 2 7 7 C 1.50703 * 117.50052 * 252.50816 * 5 4 2 8 8 O 1.21283 * 119.99495 * 68.62999 * 7 5 4 9 9 N 1.34770 * 120.00282 * 248.62247 * 7 5 4 10 10 C 1.46933 * 120.62904 * 359.72623 * 9 7 5 11 11 C 1.52760 * 109.00613 * 233.57843 * 10 9 7 12 12 C 1.53039 * 109.38813 * 305.58941 * 11 10 9 13 13 C 1.52995 * 109.46298 * 181.25875 * 12 11 10 14 14 N 1.46505 * 109.47148 * 64.93195 * 13 12 11 15 15 C 1.34772 * 120.00177 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00335 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47553 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00090 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99957 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00130 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99988 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47304 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47469 * 120.00099 * 23 21 19 26 26 H 1.48502 * 109.47109 * 239.99989 * 23 21 19 27 27 C 1.53042 * 109.53819 * 61.23886 * 12 11 10 28 28 C 1.46921 * 120.63483 * 180.02562 * 9 7 5 29 29 H 1.09002 * 109.47153 * 325.71821 * 1 2 3 30 30 H 1.09001 * 109.46832 * 205.72012 * 1 2 3 31 31 H 1.09004 * 109.47261 * 85.71993 * 1 2 3 32 32 H 1.08999 * 117.50085 * 214.98118 * 4 2 1 33 33 H 1.09003 * 117.49216 * 0.02562 * 4 2 1 34 34 H 1.08996 * 109.58510 * 353.41227 * 10 9 7 35 35 H 1.08998 * 109.58438 * 113.84380 * 10 9 7 36 36 H 1.09001 * 109.56432 * 185.54856 * 11 10 9 37 37 H 1.09006 * 109.38490 * 65.51485 * 11 10 9 38 38 H 1.09005 * 109.45838 * 301.22248 * 12 11 10 39 39 H 1.09007 * 109.47047 * 184.92976 * 13 12 11 40 40 H 1.08998 * 109.47326 * 304.93177 * 13 12 11 41 41 H 0.97000 * 119.99584 * 359.97438 * 14 13 12 42 42 H 1.08997 * 109.47357 * 300.00796 * 17 15 14 43 43 H 1.08998 * 109.46784 * 60.00219 * 17 15 14 44 44 H 0.96996 * 120.00335 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50316 * 178.69038 * 27 12 11 46 46 H 1.08994 * 109.49922 * 58.58735 * 27 12 11 47 47 H 1.08995 * 109.59112 * 246.16332 * 28 9 7 48 48 H 1.09010 * 109.58381 * 6.58045 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 3.1715 -0.8755 -1.2681 7 6 1.3720 -2.1411 -1.4602 8 8 0.1638 -2.0536 -1.4006 9 7 1.9415 -3.1502 -2.1485 10 6 3.4037 -3.2658 -2.2349 11 6 3.8095 -3.3583 -3.7047 12 6 3.0474 -4.5061 -4.3709 13 6 3.4758 -4.6203 -5.8352 14 7 4.8890 -5.0008 -5.9023 15 6 5.4874 -5.1616 -7.0991 16 8 4.8562 -4.9908 -8.1206 17 6 6.9412 -5.5524 -7.1683 18 16 7.4480 -5.6877 -8.9006 19 6 9.1372 -6.1428 -8.6906 20 1 9.5472 -6.2536 -7.6975 21 6 9.9412 -6.3580 -9.8013 22 7 9.4416 -6.2226 -11.0116 23 14 11.7318 -6.8412 -9.5787 24 1 12.0448 -6.9271 -8.1295 25 1 11.9715 -8.1607 -10.2164 26 1 12.6028 -5.8194 -10.2130 27 6 1.5435 -4.2314 -4.2996 28 6 1.1121 -4.1518 -2.8322 29 1 -0.3633 0.8491 0.5789 30 1 -0.3633 -0.9259 0.4460 31 1 -0.3634 0.0767 -1.0248 32 1 3.1716 -0.8748 1.2685 33 1 1.6112 -1.8583 1.2684 34 1 3.8669 -2.3883 -1.7838 35 1 3.7307 -4.1641 -1.7112 36 1 4.8813 -3.5431 -3.7765 37 1 3.5675 -2.4213 -4.2065 38 1 3.2711 -5.4391 -3.8534 39 1 2.8712 -5.3789 -6.3325 40 1 3.3341 -3.6601 -6.3312 41 1 5.3938 -5.1371 -5.0854 42 1 7.5455 -4.7935 -6.6714 43 1 7.0833 -6.5123 -6.6718 44 1 10.0034 -6.3734 -11.7878 45 1 1.0025 -5.0377 -4.7947 46 1 1.3225 -3.2863 -4.7953 47 1 1.2480 -5.1239 -2.3584 48 1 0.0637 -3.8586 -2.7751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687309386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = -58.520456 kcal Electronic energy + Delta-G solvation = -26580.086071 eV Core-core repulsion = 22761.505952 eV Total energy + Delta-G solvation = -3818.580120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91831 -39.44510 -38.41388 -36.77877 -35.13544 -32.89321 -32.44666 -31.60706 -29.71384 -28.93015 -27.22873 -25.52040 -24.90550 -23.80414 -22.73267 -21.45114 -20.76195 -20.25760 -19.04799 -18.00186 -17.72316 -16.34657 -16.15453 -16.10953 -15.84818 -15.49154 -15.11034 -14.82445 -14.59956 -14.47862 -14.12835 -13.91572 -13.75106 -13.50066 -13.28781 -13.06530 -12.99989 -12.84666 -12.58013 -12.55827 -12.50577 -11.89357 -11.79710 -11.68492 -11.27468 -11.08958 -11.04015 -11.01950 -10.96232 -10.76434 -10.69497 -10.41229 -9.85694 -9.82542 -9.43011 -9.09766 -9.04426 -8.90862 -8.25041 -6.52041 -6.23687 -3.94319 2.11772 2.53591 3.01695 3.08072 3.19876 3.26739 3.31144 3.34164 3.69227 3.98209 4.15343 4.18375 4.28913 4.31931 4.39589 4.45665 4.59054 4.64300 4.83471 4.94189 4.96132 5.04054 5.10740 5.11595 5.19338 5.23296 5.28345 5.36676 5.37743 5.42165 5.47784 5.57173 5.59998 5.62642 5.63348 5.69393 5.75264 5.82366 5.87018 6.01105 6.10274 6.10954 6.17923 6.58807 6.99363 7.57802 7.67522 7.82694 8.33364 8.59358 9.21747 10.83802 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.001714 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.997551 B =16335.038377 C =17033.022255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.150 4.150 5 C -0.197 4.197 6 H 0.125 0.875 7 C 0.546 3.454 8 O -0.537 6.537 9 N -0.609 5.609 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.098 4.098 13 C 0.126 3.874 14 N -0.739 5.739 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.127 4.127 28 C 0.113 3.887 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.851 8.399 25.406 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 H 0.129 0.871 4 C -0.188 4.188 5 C -0.218 4.218 6 H 0.142 0.858 7 C 0.335 3.665 8 O -0.414 6.414 9 N -0.342 5.342 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.117 4.117 13 C 0.002 3.998 14 N -0.394 5.394 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.166 4.166 28 C -0.010 4.010 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.540 8.712 23.520 30.044 hybrid contribution 2.447 -0.668 1.522 2.958 sum -14.093 8.044 25.042 29.840 Atomic orbital electron populations 1.21361 0.91426 1.01414 1.02638 1.22395 0.96670 0.93595 1.01107 0.87072 1.23083 1.03158 1.01950 0.90562 1.22333 1.02229 1.01331 0.95901 0.85764 1.19677 0.87913 0.80773 0.78156 1.90697 1.14550 1.74565 1.61593 1.48084 1.07161 1.27240 1.51719 1.21727 0.79675 1.03009 0.97180 1.21961 1.00726 0.99517 0.95010 1.21384 0.95497 0.99166 0.95654 1.21297 0.82226 1.01009 0.95236 1.46012 1.11606 1.73176 1.08577 1.20310 0.88942 0.76167 0.82904 1.90710 1.65741 1.48734 1.33982 1.23527 0.94308 1.04105 1.08464 1.85420 1.11174 1.90503 0.96338 1.22908 0.95639 1.54305 0.95516 0.90876 1.24997 0.99284 0.94880 0.94450 1.70027 1.36403 1.46146 0.97679 0.86114 0.82723 0.78269 0.78362 1.19629 1.20554 1.20567 1.21890 0.95085 1.03268 0.96321 1.21591 0.96445 0.91258 0.91657 0.93222 0.91826 0.91365 0.87759 0.88272 0.89361 0.91058 0.90120 0.90968 0.90142 0.91472 0.91602 0.76943 0.89276 0.89261 0.92219 0.90036 0.90999 0.91378 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 8.43 37.16 0.31 -0.58 16 2 C -0.12 -0.78 6.41 -90.62 -0.58 -1.36 16 3 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -0.84 9.88 -26.73 -0.26 -1.10 16 5 C -0.20 -1.32 5.13 -91.77 -0.47 -1.79 16 6 H 0.12 0.63 6.55 -51.93 -0.34 0.29 16 7 C 0.55 5.00 7.46 -10.99 -0.08 4.92 16 8 O -0.54 -6.51 12.52 5.55 0.07 -6.44 16 9 N -0.61 -4.57 2.98 -173.05 -0.52 -5.08 16 10 C 0.11 0.57 6.32 -3.93 -0.02 0.55 16 11 C -0.13 -0.83 5.23 -26.83 -0.14 -0.97 16 12 C -0.10 -0.69 2.19 -90.58 -0.20 -0.88 16 13 C 0.13 1.34 5.06 -4.04 -0.02 1.32 16 14 N -0.74 -9.03 5.27 -60.29 -0.32 -9.35 16 15 C 0.53 9.58 7.85 -10.99 -0.09 9.50 16 16 O -0.52 -11.63 15.86 5.55 0.09 -11.54 16 17 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 23 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.13 -0.88 5.36 -26.63 -0.14 -1.02 16 28 C 0.11 0.82 6.43 -3.73 -0.02 0.80 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.59 7.02 -51.93 -0.36 0.23 16 31 H 0.07 0.66 7.26 -51.93 -0.38 0.28 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.09 0.37 5.51 -51.93 -0.29 0.09 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.46 7.15 -51.93 -0.37 0.08 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.61 7.65 -40.82 -0.31 3.30 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.81 7.01 -51.92 -0.36 0.45 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -35.83 396.34 -10.38 -46.21 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.87 Total: -0.55 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.30 Total: -6.26 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.10 Total: -39.71 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.16 Total: -17.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.83 -10.38 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687309386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.311 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds