Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.55474 * 2 1 4 4 C 1.53002 * 117.50315 * 145.67338 * 2 1 3 5 5 C 1.53000 * 59.99990 * 107.48701 * 4 2 1 6 6 H 1.08997 * 117.49478 * 107.49190 * 5 4 2 7 7 C 1.50703 * 117.50052 * 252.50816 * 5 4 2 8 8 O 1.21283 * 119.99495 * 68.62999 * 7 5 4 9 9 N 1.34770 * 120.00282 * 248.62247 * 7 5 4 10 10 C 1.46933 * 120.62904 * 359.72623 * 9 7 5 11 11 C 1.52760 * 109.00613 * 233.57843 * 10 9 7 12 12 C 1.53039 * 109.38813 * 305.58941 * 11 10 9 13 13 C 1.52995 * 109.46298 * 181.25875 * 12 11 10 14 14 N 1.46505 * 109.47148 * 64.93195 * 13 12 11 15 15 C 1.34772 * 120.00177 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00335 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47553 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00090 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99957 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00130 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99988 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47304 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47469 * 120.00099 * 23 21 19 26 26 H 1.48502 * 109.47109 * 239.99989 * 23 21 19 27 27 C 1.53042 * 109.53819 * 61.23886 * 12 11 10 28 28 C 1.46921 * 120.63483 * 180.02562 * 9 7 5 29 29 H 1.09002 * 109.47153 * 325.71821 * 1 2 3 30 30 H 1.09001 * 109.46832 * 205.72012 * 1 2 3 31 31 H 1.09004 * 109.47261 * 85.71993 * 1 2 3 32 32 H 1.08999 * 117.50085 * 214.98118 * 4 2 1 33 33 H 1.09003 * 117.49216 * 0.02562 * 4 2 1 34 34 H 1.08996 * 109.58510 * 353.41227 * 10 9 7 35 35 H 1.08998 * 109.58438 * 113.84380 * 10 9 7 36 36 H 1.09001 * 109.56432 * 185.54856 * 11 10 9 37 37 H 1.09006 * 109.38490 * 65.51485 * 11 10 9 38 38 H 1.09005 * 109.45838 * 301.22248 * 12 11 10 39 39 H 1.09007 * 109.47047 * 184.92976 * 13 12 11 40 40 H 1.08998 * 109.47326 * 304.93177 * 13 12 11 41 41 H 0.97000 * 119.99584 * 359.97438 * 14 13 12 42 42 H 1.08997 * 109.47357 * 300.00796 * 17 15 14 43 43 H 1.08998 * 109.46784 * 60.00219 * 17 15 14 44 44 H 0.96996 * 120.00335 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50316 * 178.69038 * 27 12 11 46 46 H 1.08994 * 109.49922 * 58.58735 * 27 12 11 47 47 H 1.08995 * 109.59112 * 246.16332 * 28 9 7 48 48 H 1.09010 * 109.58381 * 6.58045 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 2.2364 -1.1212 -0.7647 6 1 3.1715 -0.8755 -1.2681 7 6 1.3720 -2.1411 -1.4602 8 8 0.1638 -2.0536 -1.4006 9 7 1.9415 -3.1502 -2.1485 10 6 3.4037 -3.2658 -2.2349 11 6 3.8095 -3.3583 -3.7047 12 6 3.0474 -4.5061 -4.3709 13 6 3.4758 -4.6203 -5.8352 14 7 4.8890 -5.0008 -5.9023 15 6 5.4874 -5.1616 -7.0991 16 8 4.8562 -4.9908 -8.1206 17 6 6.9412 -5.5524 -7.1683 18 16 7.4480 -5.6877 -8.9006 19 6 9.1372 -6.1428 -8.6906 20 1 9.5472 -6.2536 -7.6975 21 6 9.9412 -6.3580 -9.8013 22 7 9.4416 -6.2226 -11.0116 23 14 11.7318 -6.8412 -9.5787 24 1 12.0448 -6.9271 -8.1295 25 1 11.9715 -8.1607 -10.2164 26 1 12.6028 -5.8194 -10.2130 27 6 1.5435 -4.2314 -4.2996 28 6 1.1121 -4.1518 -2.8322 29 1 -0.3633 0.8491 0.5789 30 1 -0.3633 -0.9259 0.4460 31 1 -0.3634 0.0767 -1.0248 32 1 3.1716 -0.8748 1.2685 33 1 1.6112 -1.8583 1.2684 34 1 3.8669 -2.3883 -1.7838 35 1 3.7307 -4.1641 -1.7112 36 1 4.8813 -3.5431 -3.7765 37 1 3.5675 -2.4213 -4.2065 38 1 3.2711 -5.4391 -3.8534 39 1 2.8712 -5.3789 -6.3325 40 1 3.3341 -3.6601 -6.3312 41 1 5.3938 -5.1371 -5.0854 42 1 7.5455 -4.7935 -6.6714 43 1 7.0833 -6.5123 -6.6718 44 1 10.0034 -6.3734 -11.7878 45 1 1.0025 -5.0377 -4.7947 46 1 1.3225 -3.2863 -4.7953 47 1 1.2480 -5.1239 -2.3584 48 1 0.0637 -3.8586 -2.7751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687309386.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = -81.940951 kcal Electronic energy + Delta-G solvation = -26581.101660 eV Core-core repulsion = 22761.505952 eV Total energy + Delta-G solvation = -3819.595708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54296 -40.65541 -39.20108 -37.41034 -36.11656 -34.57545 -33.83864 -32.18621 -31.04153 -29.59407 -28.15307 -27.58670 -25.57173 -24.38455 -23.40003 -21.97555 -21.78200 -21.18454 -19.86134 -19.59646 -18.45981 -17.73325 -17.26969 -16.87114 -16.78228 -16.63768 -16.45942 -15.87540 -15.70794 -15.47976 -15.00566 -14.85460 -14.66604 -14.48522 -14.26637 -14.14274 -13.93258 -13.70836 -13.56014 -13.32493 -13.14824 -13.11847 -12.99509 -12.89395 -12.59310 -12.37413 -12.22213 -11.98674 -11.70778 -11.59638 -11.56846 -11.19753 -11.15068 -10.93204 -10.91249 -10.52282 -10.25149 -10.09541 -9.64783 -8.65691 -8.33871 -6.11830 1.28688 1.42386 1.48666 1.49370 1.59506 1.63871 1.98629 2.27134 2.32613 2.84358 3.00576 3.33717 3.45688 3.65125 3.65881 3.77643 3.84551 3.92774 4.02571 4.10249 4.10947 4.31397 4.34352 4.36053 4.47710 4.48779 4.53472 4.58766 4.68534 4.73142 4.81844 4.85015 4.91033 4.94260 4.95722 4.97378 5.03154 5.06181 5.15438 5.18062 5.36077 5.43306 5.49260 5.50160 5.59227 6.21078 6.40679 6.53905 7.07730 7.19042 7.27929 8.75584 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.001714 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.997551 B =16335.038377 C =17033.022255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 H 0.130 0.870 4 C -0.134 4.134 5 C -0.201 4.201 6 H 0.146 0.854 7 C 0.535 3.465 8 O -0.578 6.578 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.132 4.132 12 C -0.085 4.085 13 C 0.127 3.873 14 N -0.708 5.708 15 C 0.532 3.468 16 O -0.570 6.570 17 C -0.129 4.129 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.121 4.121 28 C 0.114 3.886 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.417 0.583 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 8.160 28.522 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 H 0.148 0.852 4 C -0.171 4.171 5 C -0.222 4.222 6 H 0.164 0.836 7 C 0.325 3.675 8 O -0.458 6.458 9 N -0.340 5.340 10 C -0.015 4.015 11 C -0.170 4.170 12 C -0.104 4.104 13 C 0.003 3.997 14 N -0.363 5.363 15 C 0.318 3.682 16 O -0.449 6.449 17 C -0.280 4.280 18 S 0.070 5.930 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.160 4.160 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.102 0.898 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.307 8.466 26.704 31.456 hybrid contribution 1.617 -0.576 0.626 1.827 sum -12.690 7.890 27.329 31.148 Atomic orbital electron populations 1.21256 0.93085 1.00951 1.01107 1.22490 0.95550 0.94832 1.02050 0.85177 1.23143 1.03711 1.00619 0.89674 1.22405 1.02486 1.00654 0.96655 0.83630 1.20215 0.87778 0.81347 0.78190 1.90684 1.16382 1.75593 1.63153 1.48213 1.08252 1.26640 1.50929 1.21905 0.78128 1.04770 0.96690 1.21955 1.01280 0.98346 0.95408 1.21302 0.95304 1.00632 0.93131 1.21392 0.80746 0.99820 0.97693 1.45708 1.12277 1.70782 1.07516 1.20093 0.88285 0.76059 0.83787 1.90702 1.66544 1.51450 1.36155 1.23368 0.95641 1.06120 1.02850 1.85635 1.12341 1.90906 1.04084 1.23246 0.95669 1.54083 0.96198 0.89726 1.26138 1.04589 0.94573 0.93949 1.70194 1.38458 1.47457 0.98782 0.84899 0.76001 0.77846 0.79153 1.17835 1.20059 1.20045 1.21823 0.95294 1.02761 0.96130 1.21561 0.95562 0.91914 0.91828 0.91934 0.93676 0.93736 0.85113 0.89354 0.87686 0.89185 0.88764 0.92318 0.88163 0.92451 0.93085 0.74508 0.86987 0.87073 0.92047 0.89406 0.92541 0.89765 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 8.43 71.98 0.61 -1.15 16 2 C -0.13 -1.53 6.41 -10.79 -0.07 -1.60 16 3 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.13 -1.18 9.88 30.59 0.30 -0.88 16 5 C -0.20 -2.30 5.13 -11.54 -0.06 -2.36 16 6 H 0.15 1.00 6.55 -2.39 -0.02 0.98 16 7 C 0.53 9.46 7.46 87.66 0.65 10.11 16 8 O -0.58 -14.59 12.52 -3.04 -0.04 -14.63 16 9 N -0.61 -8.15 2.98 -819.81 -2.44 -10.59 16 10 C 0.11 0.78 6.32 86.22 0.54 1.33 16 11 C -0.13 -1.23 5.23 30.53 0.16 -1.07 16 12 C -0.08 -0.98 2.19 -10.77 -0.02 -1.00 16 13 C 0.13 2.51 5.06 86.38 0.44 2.95 16 14 N -0.71 -15.60 5.27 -463.06 -2.44 -18.04 16 15 C 0.53 18.64 7.85 87.66 0.69 19.33 16 16 O -0.57 -26.05 15.86 -3.06 -0.05 -26.10 16 17 C -0.13 -4.84 6.16 71.23 0.44 -4.40 16 18 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 19 C -0.54 -30.53 9.50 67.95 0.65 -29.89 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -55.70 13.22 21.65 0.29 -55.42 16 23 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 C -0.12 -1.56 5.36 30.66 0.16 -1.39 16 28 C 0.11 1.54 6.43 86.35 0.56 2.10 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.89 7.02 -2.39 -0.02 0.87 16 31 H 0.04 0.92 7.26 -2.38 -0.02 0.91 16 32 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.99 8.05 -2.39 -0.02 0.97 16 34 H 0.11 0.46 5.51 -2.39 -0.01 0.45 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 0.66 7.15 -2.39 -0.02 0.65 16 37 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.42 5.90 7.65 -92.71 -0.71 5.19 16 42 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 43 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 1.33 7.01 -2.38 -0.02 1.31 16 Total: -1.00 -82.33 396.34 1.94 -80.39 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.25 Total: 15.98 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.51 Total: -6.78 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -4.60 Total: -84.05 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.09 Total: -40.73 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -82.33 1.94 -80.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687309386.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.550 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds