Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.56126 * 2 1 4 4 C 1.52998 * 117.49781 * 214.30883 * 2 1 3 5 5 C 1.53003 * 117.49760 * 145.68623 * 2 1 3 6 6 H 1.08997 * 117.49397 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.49844 * 214.97939 * 5 2 1 8 8 O 1.21281 * 120.00046 * 4.52506 * 7 5 2 9 9 N 1.34778 * 119.99591 * 184.51881 * 7 5 2 10 10 C 1.46501 * 119.99489 * 185.13052 * 9 7 5 11 11 C 1.52995 * 109.47402 * 270.00537 * 10 9 7 12 12 C 1.53007 * 109.47111 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47109 * 179.97438 * 12 11 10 14 14 C 1.34768 * 119.99813 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00605 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99822 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.47042 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99996 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99790 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47041 * 119.99971 * 22 20 18 25 25 H 1.48499 * 109.46992 * 239.99983 * 22 20 18 26 26 C 1.46495 * 120.00126 * 5.13911 * 9 7 5 27 27 C 1.53003 * 117.49817 * 182.63880 * 26 9 7 28 28 C 1.53001 * 117.49961 * 114.01721 * 26 9 7 29 29 H 1.09002 * 109.47171 * 274.31247 * 1 2 3 30 30 H 1.09000 * 109.46702 * 34.30919 * 1 2 3 31 31 H 1.08998 * 109.47064 * 154.31277 * 1 2 3 32 32 H 1.08997 * 117.49647 * 145.02459 * 4 2 1 33 33 H 1.08999 * 117.50013 * 0.02562 * 4 2 1 34 34 H 1.09008 * 109.46900 * 150.00564 * 10 9 7 35 35 H 1.08998 * 109.47267 * 30.00522 * 10 9 7 36 36 H 1.09008 * 109.47377 * 299.99925 * 11 10 9 37 37 H 1.08996 * 109.47705 * 60.00170 * 11 10 9 38 38 H 1.08998 * 109.47017 * 299.99654 * 12 11 10 39 39 H 1.08999 * 109.47333 * 60.00037 * 12 11 10 40 40 H 0.97003 * 119.99715 * 359.97438 * 13 12 11 41 41 H 1.08998 * 109.47402 * 299.99530 * 16 14 13 42 42 H 1.09000 * 109.47389 * 60.00184 * 16 14 13 43 43 H 0.97000 * 120.00147 * 180.02562 * 21 20 18 44 44 H 1.08996 * 115.55056 * 328.34433 * 26 9 7 45 45 H 1.09006 * 117.49616 * 359.97438 * 27 26 9 46 46 H 1.08994 * 117.50259 * 145.01895 * 27 26 9 47 47 H 1.09000 * 117.49664 * 214.97699 * 28 26 9 48 48 H 1.08999 * 117.49694 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7651 6 1 1.6112 -1.8581 1.2687 7 6 3.5293 -0.7811 1.4609 8 8 3.9299 0.3636 1.4707 9 7 4.2401 -1.7492 2.0723 10 6 5.4366 -1.4031 2.8437 11 6 6.6615 -1.4370 1.9277 12 6 7.9111 -1.0762 2.7335 13 7 9.0842 -1.1093 1.8565 14 6 10.3043 -0.8227 2.3520 15 8 10.4312 -0.5370 3.5238 16 6 11.5110 -0.8573 1.4500 17 16 12.9890 -0.4288 2.4029 18 6 14.2119 -0.5446 1.1396 19 1 13.9254 -0.8153 0.1340 20 6 15.5430 -0.2868 1.4363 21 7 15.8920 0.0437 2.6618 22 14 16.8392 -0.4088 0.0968 23 1 16.1931 -0.7937 -1.1837 24 1 17.5106 0.9060 -0.0636 25 1 17.8444 -1.4353 0.4728 26 6 3.8165 -3.1475 1.9655 27 6 4.6293 -4.1925 2.7326 28 6 4.7358 -4.1083 1.2086 29 1 -0.3633 0.0773 1.0248 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3633 -0.9261 -0.4454 32 1 3.1715 -0.8752 -1.2682 33 1 1.6112 -1.8583 -1.2686 34 1 5.5678 -2.1219 3.6527 35 1 5.3229 -0.4028 3.2614 36 1 6.7754 -2.4375 1.5100 37 1 6.5304 -0.7184 1.1188 38 1 7.7976 -0.0759 3.1514 39 1 8.0422 -1.7952 3.5422 40 1 8.9826 -1.3374 0.9192 41 1 11.6246 -1.8580 1.0332 42 1 11.3803 -0.1392 0.6405 43 1 16.8222 0.2242 2.8692 44 1 2.7418 -3.3080 1.8812 45 1 5.4795 -3.8395 3.3164 46 1 4.0893 -5.0406 3.1533 47 1 4.2657 -4.9011 0.6267 48 1 5.6555 -3.6998 0.7898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687803527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -26.412370 kcal Electronic energy + Delta-G solvation = -26268.698019 eV Core-core repulsion = 22451.510211 eV Total energy + Delta-G solvation = -3817.187808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81532 -39.15971 -38.40390 -37.04543 -35.49651 -33.77532 -32.41768 -31.78923 -29.52119 -28.91879 -26.28173 -25.44170 -24.00726 -23.15239 -22.69342 -21.77700 -21.12760 -20.30321 -19.18899 -18.26386 -17.81451 -16.75906 -16.26619 -15.94179 -15.79682 -15.41634 -15.32601 -14.88870 -14.79410 -14.45789 -14.30635 -13.96438 -13.86216 -13.52978 -13.16617 -12.95744 -12.85295 -12.75801 -12.50136 -12.41926 -12.15955 -11.90670 -11.73819 -11.66616 -11.49307 -11.15042 -11.06310 -11.00702 -10.93650 -10.80861 -10.74824 -10.50342 -10.10163 -9.79517 -9.41734 -9.06725 -8.94465 -8.86909 -8.21624 -6.48530 -6.20640 -3.90986 2.07287 2.35965 3.06642 3.12403 3.21793 3.22376 3.29275 3.34323 3.41498 3.74173 3.88673 4.20414 4.21422 4.25858 4.28935 4.35546 4.42216 4.57348 4.65117 4.79121 4.85409 4.87136 5.00373 5.12973 5.14566 5.20849 5.22718 5.24698 5.26367 5.29666 5.34139 5.41793 5.47559 5.58191 5.59513 5.62122 5.69675 5.83923 5.85825 5.92554 5.96664 6.09786 6.15653 6.62833 6.94562 7.61031 7.72398 7.78547 8.36629 8.63406 9.24776 10.86883 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.001714 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.201248 B =16334.770510 C =16710.824933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.123 0.877 7 C 0.548 3.452 8 O -0.531 6.531 9 N -0.582 5.582 10 C 0.114 3.886 11 C -0.148 4.148 12 C 0.125 3.875 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.069 3.931 27 C -0.183 4.183 28 C -0.191 4.191 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.102 0.898 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.539 -9.040 -5.683 35.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.141 0.859 7 C 0.337 3.663 8 O -0.407 6.407 9 N -0.313 5.313 10 C -0.009 4.009 11 C -0.187 4.187 12 C 0.000 4.000 13 N -0.393 5.393 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.036 4.036 27 C -0.221 4.221 28 C -0.230 4.230 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.147 0.853 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -32.975 -7.866 -3.561 34.086 hybrid contribution 0.736 -0.759 -2.601 2.807 sum -32.239 -8.625 -6.162 33.937 Atomic orbital electron populations 1.21399 0.92144 1.02281 1.02229 1.22407 0.95320 0.95167 1.01343 0.86483 1.23091 1.03155 1.01537 0.90632 1.22293 0.97527 1.05324 0.95907 0.85906 1.19661 0.84390 0.84394 0.77882 1.90735 1.70524 1.20099 1.59294 1.47313 1.26942 1.05530 1.51468 1.21458 0.82926 1.02959 0.93536 1.22243 0.93888 1.02768 0.99774 1.21134 0.83588 1.02196 0.93085 1.45969 1.06750 1.73361 1.13241 1.20305 0.83557 0.75724 0.88667 1.90700 1.85378 1.46013 1.17111 1.23532 0.98897 1.05123 1.02848 1.85400 0.93723 1.90127 1.14154 1.22915 0.93907 1.54507 0.96995 0.90878 1.24996 0.97829 0.94548 0.96243 1.70031 1.18094 1.43728 1.18432 0.86113 0.80541 0.77950 0.80860 1.19632 1.20562 1.20564 1.21759 0.96922 0.78732 1.06148 1.23382 1.03075 1.00388 0.95236 1.23522 1.02599 1.02254 0.94606 0.91940 0.91576 0.92355 0.88297 0.87749 0.89603 0.89174 0.90999 0.90658 0.91393 0.91585 0.76893 0.89246 0.89228 0.92242 0.85284 0.87680 0.87614 0.87948 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.19 37.16 0.38 -0.19 16 2 C -0.12 -0.83 5.92 -90.62 -0.54 -1.36 16 3 H 0.12 1.01 7.68 -51.93 -0.40 0.62 16 4 C -0.15 -0.84 9.88 -26.73 -0.26 -1.10 16 5 C -0.19 -1.26 4.86 -91.77 -0.45 -1.70 16 6 H 0.12 0.56 6.91 -51.93 -0.36 0.20 16 7 C 0.55 5.32 7.44 -10.99 -0.08 5.24 16 8 O -0.53 -7.27 15.90 5.56 0.09 -7.18 16 9 N -0.58 -4.55 2.80 -166.11 -0.47 -5.01 16 10 C 0.11 0.96 4.91 -4.04 -0.02 0.94 16 11 C -0.15 -1.33 5.61 -26.73 -0.15 -1.48 16 12 C 0.12 1.49 5.67 -4.04 -0.02 1.46 16 13 N -0.74 -10.23 5.56 -60.29 -0.33 -10.57 16 14 C 0.53 10.22 7.85 -10.99 -0.09 10.13 16 15 O -0.52 -12.08 15.86 5.56 0.09 -12.00 16 16 C -0.15 -3.17 6.16 36.01 0.22 -2.94 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.07 0.36 5.95 -67.93 -0.40 -0.04 16 27 C -0.18 -0.86 9.74 -26.73 -0.26 -1.12 16 28 C -0.19 -0.95 10.19 -26.73 -0.27 -1.22 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.20 7.90 -51.93 -0.41 -0.21 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.09 0.59 6.00 -51.92 -0.31 0.27 16 35 H 0.09 0.91 7.50 -51.93 -0.39 0.52 16 36 H 0.07 0.57 5.90 -51.92 -0.31 0.26 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 4.37 8.47 -40.82 -0.35 4.02 16 41 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 0.45 6.56 -51.93 -0.34 0.11 16 45 H 0.10 0.57 6.11 -51.93 -0.32 0.25 16 46 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.10 0.62 6.12 -51.93 -0.32 0.30 16 LS Contribution 408.88 15.07 6.16 6.16 Total: -1.00 -36.85 408.88 -10.40 -47.25 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.69 Total: 0.85 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.75 Total: -6.52 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.07 Total: -41.25 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.85 -10.40 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687803527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.833 kcal (2) G-P(sol) polarization free energy of solvation -36.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds