Wall clock time and date at job start Sat Apr 11 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.56126 * 2 1 4 4 C 1.52998 * 117.49781 * 214.30883 * 2 1 3 5 5 C 1.53003 * 117.49760 * 145.68623 * 2 1 3 6 6 H 1.08997 * 117.49397 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.49844 * 214.97939 * 5 2 1 8 8 O 1.21281 * 120.00046 * 4.52506 * 7 5 2 9 9 N 1.34778 * 119.99591 * 184.51881 * 7 5 2 10 10 C 1.46501 * 119.99489 * 185.13052 * 9 7 5 11 11 C 1.52995 * 109.47402 * 270.00537 * 10 9 7 12 12 C 1.53007 * 109.47111 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47109 * 179.97438 * 12 11 10 14 14 C 1.34768 * 119.99813 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00605 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99822 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.47042 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99996 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99790 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99815 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47041 * 119.99971 * 22 20 18 25 25 H 1.48499 * 109.46992 * 239.99983 * 22 20 18 26 26 C 1.46495 * 120.00126 * 5.13911 * 9 7 5 27 27 C 1.53003 * 117.49817 * 182.63880 * 26 9 7 28 28 C 1.53001 * 117.49961 * 114.01721 * 26 9 7 29 29 H 1.09002 * 109.47171 * 274.31247 * 1 2 3 30 30 H 1.09000 * 109.46702 * 34.30919 * 1 2 3 31 31 H 1.08998 * 109.47064 * 154.31277 * 1 2 3 32 32 H 1.08997 * 117.49647 * 145.02459 * 4 2 1 33 33 H 1.08999 * 117.50013 * 0.02562 * 4 2 1 34 34 H 1.09008 * 109.46900 * 150.00564 * 10 9 7 35 35 H 1.08998 * 109.47267 * 30.00522 * 10 9 7 36 36 H 1.09008 * 109.47377 * 299.99925 * 11 10 9 37 37 H 1.08996 * 109.47705 * 60.00170 * 11 10 9 38 38 H 1.08998 * 109.47017 * 299.99654 * 12 11 10 39 39 H 1.08999 * 109.47333 * 60.00037 * 12 11 10 40 40 H 0.97003 * 119.99715 * 359.97438 * 13 12 11 41 41 H 1.08998 * 109.47402 * 299.99530 * 16 14 13 42 42 H 1.09000 * 109.47389 * 60.00184 * 16 14 13 43 43 H 0.97000 * 120.00147 * 180.02562 * 21 20 18 44 44 H 1.08996 * 115.55056 * 328.34433 * 26 9 7 45 45 H 1.09006 * 117.49616 * 359.97438 * 27 26 9 46 46 H 1.08994 * 117.50259 * 145.01895 * 27 26 9 47 47 H 1.09000 * 117.49664 * 214.97699 * 28 26 9 48 48 H 1.08999 * 117.49694 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7651 6 1 1.6112 -1.8581 1.2687 7 6 3.5293 -0.7811 1.4609 8 8 3.9299 0.3636 1.4707 9 7 4.2401 -1.7492 2.0723 10 6 5.4366 -1.4031 2.8437 11 6 6.6615 -1.4370 1.9277 12 6 7.9111 -1.0762 2.7335 13 7 9.0842 -1.1093 1.8565 14 6 10.3043 -0.8227 2.3520 15 8 10.4312 -0.5370 3.5238 16 6 11.5110 -0.8573 1.4500 17 16 12.9890 -0.4288 2.4029 18 6 14.2119 -0.5446 1.1396 19 1 13.9254 -0.8153 0.1340 20 6 15.5430 -0.2868 1.4363 21 7 15.8920 0.0437 2.6618 22 14 16.8392 -0.4088 0.0968 23 1 16.1931 -0.7937 -1.1837 24 1 17.5106 0.9060 -0.0636 25 1 17.8444 -1.4353 0.4728 26 6 3.8165 -3.1475 1.9655 27 6 4.6293 -4.1925 2.7326 28 6 4.7358 -4.1083 1.2086 29 1 -0.3633 0.0773 1.0248 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3633 -0.9261 -0.4454 32 1 3.1715 -0.8752 -1.2682 33 1 1.6112 -1.8583 -1.2686 34 1 5.5678 -2.1219 3.6527 35 1 5.3229 -0.4028 3.2614 36 1 6.7754 -2.4375 1.5100 37 1 6.5304 -0.7184 1.1188 38 1 7.7976 -0.0759 3.1514 39 1 8.0422 -1.7952 3.5422 40 1 8.9826 -1.3374 0.9192 41 1 11.6246 -1.8580 1.0332 42 1 11.3803 -0.1392 0.6405 43 1 16.8222 0.2242 2.8692 44 1 2.7418 -3.3080 1.8812 45 1 5.4795 -3.8395 3.3164 46 1 4.0893 -5.0406 3.1533 47 1 4.2657 -4.9011 0.6267 48 1 5.6555 -3.6998 0.7898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687803527.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:52 Heat of formation + Delta-G solvation = -50.523367 kcal Electronic energy + Delta-G solvation = -26269.743551 eV Core-core repulsion = 22451.510211 eV Total energy + Delta-G solvation = -3818.233340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47955 -40.63150 -38.96617 -37.64858 -36.61254 -34.61647 -34.57299 -32.83248 -30.77403 -29.56988 -27.74779 -27.05512 -24.68127 -23.60984 -23.28433 -22.46919 -21.88635 -21.48955 -19.84883 -19.76865 -18.84782 -17.82795 -17.60224 -16.93144 -16.90949 -16.87839 -16.31381 -16.16629 -15.71479 -15.58629 -15.29051 -14.95883 -14.73382 -14.49416 -14.35706 -13.93419 -13.86488 -13.70240 -13.42175 -13.24636 -13.17560 -12.92150 -12.88967 -12.62670 -12.54897 -12.53058 -12.30978 -12.00990 -11.72619 -11.68186 -11.56185 -11.29895 -11.17051 -11.04279 -10.95415 -10.77538 -10.29554 -10.18461 -9.57664 -8.68697 -8.36059 -6.14534 1.24571 1.38198 1.40756 1.45658 1.56563 1.57060 1.75970 2.24986 2.29056 2.77993 2.96911 2.98162 3.30010 3.37464 3.71069 3.76889 3.78941 3.85803 3.86110 3.96348 4.00952 4.09864 4.13904 4.20242 4.25739 4.32429 4.42306 4.45977 4.47965 4.66200 4.74547 4.86242 4.86296 4.89311 4.92905 4.95465 5.00300 5.06381 5.20627 5.22470 5.28397 5.36523 5.40636 5.40909 5.45784 6.18827 6.32405 6.44387 7.05227 7.08641 7.18886 8.73541 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.001714 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.201248 B =16334.770510 C =16710.824933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 H 0.086 0.914 4 C -0.133 4.133 5 C -0.188 4.188 6 H 0.152 0.848 7 C 0.538 3.462 8 O -0.583 6.583 9 N -0.577 5.577 10 C 0.113 3.887 11 C -0.129 4.129 12 C 0.125 3.875 13 N -0.713 5.713 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.272 1.272 26 C 0.060 3.940 27 C -0.181 4.181 28 C -0.189 4.189 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.415 0.585 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.153 0.847 45 H 0.096 0.904 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.367 -11.602 -7.944 38.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 H 0.105 0.895 4 C -0.170 4.170 5 C -0.209 4.209 6 H 0.169 0.831 7 C 0.329 3.671 8 O -0.463 6.463 9 N -0.306 5.306 10 C -0.011 4.011 11 C -0.167 4.167 12 C 0.001 3.999 13 N -0.367 5.367 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.281 4.281 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.198 1.198 26 C -0.044 4.044 27 C -0.218 4.218 28 C -0.228 4.228 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.252 0.748 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.170 0.830 45 H 0.115 0.885 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -34.856 -10.481 -5.858 36.867 hybrid contribution 1.191 0.017 -1.888 2.232 sum -33.665 -10.464 -7.746 36.095 Atomic orbital electron populations 1.21380 0.90284 1.03320 1.02487 1.22410 0.96685 0.94104 1.02378 0.89541 1.23155 1.02672 1.01316 0.89880 1.22353 0.96192 1.05864 0.96451 0.83099 1.20290 0.85325 0.83902 0.77600 1.90709 1.71964 1.22295 1.61376 1.47364 1.26152 1.06671 1.50444 1.21401 0.83149 1.02482 0.94024 1.22068 0.92575 1.03220 0.98872 1.21238 0.83736 1.01532 0.93379 1.45731 1.05551 1.71081 1.14378 1.20089 0.84612 0.75694 0.87721 1.90689 1.86144 1.48621 1.18946 1.23374 0.95881 1.06670 1.02166 1.85584 0.98259 1.90939 1.17666 1.23244 0.94410 1.54627 0.97171 0.89885 1.26146 1.00406 0.93726 0.98904 1.70192 1.18830 1.44787 1.20968 0.84885 0.77051 0.78164 0.77708 1.18038 1.19969 1.19778 1.22082 0.98287 0.77014 1.06969 1.23458 1.02732 1.00503 0.95105 1.23552 1.01981 1.02302 0.94938 0.91917 0.91529 0.90470 0.89804 0.84866 0.87649 0.91415 0.89068 0.92099 0.93068 0.91141 0.74797 0.86941 0.87407 0.91959 0.82982 0.88538 0.85863 0.86206 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.19 71.98 0.73 -0.15 16 2 C -0.14 -1.75 5.92 -10.79 -0.06 -1.82 16 3 H 0.09 1.64 7.68 -2.39 -0.02 1.62 16 4 C -0.13 -1.28 9.88 30.59 0.30 -0.98 16 5 C -0.19 -2.20 4.86 -11.54 -0.06 -2.25 16 6 H 0.15 0.87 6.91 -2.39 -0.02 0.85 16 7 C 0.54 10.36 7.44 87.66 0.65 11.01 16 8 O -0.58 -16.90 15.90 -3.03 -0.05 -16.95 16 9 N -0.58 -8.39 2.80 -797.84 -2.24 -10.63 16 10 C 0.11 1.86 4.91 86.38 0.42 2.28 16 11 C -0.13 -2.21 5.61 30.60 0.17 -2.04 16 12 C 0.13 2.94 5.67 86.38 0.49 3.43 16 13 N -0.71 -18.97 5.56 -463.06 -2.57 -21.54 16 14 C 0.53 20.39 7.85 87.66 0.69 21.07 16 15 O -0.57 -27.07 15.86 -3.02 -0.05 -27.12 16 16 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 17 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 18 C -0.55 -31.63 9.50 67.95 0.65 -30.99 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 22 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.06 0.46 5.95 44.99 0.27 0.73 16 27 C -0.18 -1.17 9.74 30.60 0.30 -0.87 16 28 C -0.19 -1.30 10.19 30.60 0.31 -0.98 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.30 7.90 -2.39 -0.02 0.28 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.13 0.52 8.05 -2.39 -0.02 0.50 16 34 H 0.11 1.31 6.00 -2.38 -0.01 1.30 16 35 H 0.07 1.44 7.50 -2.39 -0.02 1.42 16 36 H 0.09 1.25 5.90 -2.38 -0.01 1.23 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.42 8.22 8.47 -92.71 -0.79 7.44 16 41 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.15 0.47 6.56 -2.39 -0.02 0.46 16 45 H 0.10 0.81 6.11 -2.38 -0.01 0.80 16 46 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.12 0.43 8.14 -2.39 -0.02 0.42 16 48 H 0.09 0.85 6.12 -2.39 -0.01 0.84 16 Total: -1.00 -84.31 408.88 2.20 -82.11 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.18 Total: 19.27 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.77 Total: -5.18 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -4.52 Total: -88.43 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.10 Total: -44.06 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -84.31 2.20 -82.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687803527.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.590 kcal (2) G-P(sol) polarization free energy of solvation -84.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds