Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01838 * 2 1 4 4 C 1.54265 * 110.03042 * 238.56251 * 2 1 3 5 5 C 1.54889 * 104.19570 * 264.32168 * 4 2 1 6 6 C 1.54895 * 102.74986 * 322.05945 * 5 4 2 7 7 C 1.53871 * 110.03455 * 121.39543 * 2 1 3 8 8 C 1.53003 * 110.02895 * 238.61951 * 7 2 1 9 9 C 1.50707 * 110.03182 * 359.97438 * 7 2 1 10 10 O 1.21279 * 119.99463 * 112.38306 * 9 7 2 11 11 N 1.34777 * 119.99900 * 292.38653 * 9 7 2 12 12 C 1.46497 * 119.99890 * 175.00770 * 11 9 7 13 13 C 1.53495 * 114.20896 * 154.99965 * 12 11 9 14 14 N 1.47068 * 87.98250 * 87.71883 * 13 12 11 15 15 C 1.34772 * 136.05316 * 207.08695 * 14 13 12 16 16 O 1.21279 * 120.00621 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99721 * 180.02562 * 15 14 13 18 18 S 1.80995 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99897 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31640 * 119.99608 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00329 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47100 * 89.99739 * 23 21 19 25 25 H 1.48498 * 109.47514 * 209.99869 * 23 21 19 26 26 H 1.48500 * 109.47177 * 329.99854 * 23 21 19 27 27 C 1.47062 * 87.88309 * 27.34397 * 14 13 12 28 28 H 1.09001 * 109.47205 * 305.16729 * 1 2 3 29 29 H 1.09002 * 109.47095 * 65.16508 * 1 2 3 30 30 H 1.09001 * 109.47224 * 185.16447 * 1 2 3 31 31 H 1.08995 * 110.49025 * 23.00092 * 4 2 1 32 32 H 1.09005 * 110.48880 * 145.51506 * 4 2 1 33 33 H 1.09000 * 110.75607 * 80.37352 * 5 4 2 34 34 H 1.08993 * 110.76527 * 203.55989 * 5 4 2 35 35 H 1.08995 * 110.48740 * 279.26309 * 6 5 4 36 36 H 1.09001 * 110.48751 * 156.61257 * 6 5 4 37 37 H 1.09005 * 109.46577 * 180.68847 * 8 7 2 38 38 H 1.08998 * 109.46965 * 300.68264 * 8 7 2 39 39 H 1.08998 * 109.47249 * 60.69290 * 8 7 2 40 40 H 0.96997 * 120.00327 * 355.01518 * 11 9 7 41 41 H 1.09006 * 113.27967 * 21.93952 * 12 11 9 42 42 H 1.09006 * 113.46363 * 332.93929 * 13 12 11 43 43 H 1.09000 * 113.52493 * 202.51292 * 13 12 11 44 44 H 1.09002 * 109.47235 * 59.99918 * 17 15 14 45 45 H 1.08992 * 109.46726 * 299.99533 * 17 15 14 46 46 H 0.96996 * 119.99544 * 180.02562 * 22 21 19 47 47 H 1.09003 * 113.46681 * 87.44173 * 27 14 13 48 48 H 1.09001 * 113.46494 * 217.86722 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 -1.2366 5 6 2.3281 -2.1904 -0.7183 6 6 2.8875 -1.9404 0.7043 7 6 2.0571 -0.7531 1.2340 8 6 2.9399 0.1716 2.0746 9 6 0.9038 -1.2579 2.0623 10 8 0.6968 -2.4496 2.1510 11 7 0.1024 -0.3850 2.7044 12 6 -1.0819 -0.8672 3.4194 13 6 -1.5466 0.0507 4.5585 14 7 -2.3503 0.7846 3.5694 15 6 -2.8197 2.0414 3.4405 16 8 -2.5830 2.8679 4.2959 17 6 -3.6388 2.4198 2.2334 18 16 -4.1181 4.1611 2.3512 19 6 -5.0363 4.3275 0.8566 20 1 -5.1524 3.4802 0.1970 21 6 -5.6112 5.5472 0.5275 22 7 -6.2976 5.6714 -0.5889 23 14 -5.4109 7.0125 1.6686 24 1 -4.1892 7.7687 1.2934 25 1 -6.5970 7.8981 1.5501 26 1 -5.2872 6.5357 3.0695 27 6 -2.4218 -0.4580 2.7861 28 1 -0.3634 0.5919 0.8401 29 1 -0.3633 0.4316 -0.9326 30 1 -0.3634 -1.0235 0.0925 31 1 1.3061 -0.7704 -2.0252 32 1 2.9798 -0.2993 -1.5980 33 1 1.4031 -2.7654 -0.6741 34 1 3.0651 -2.6948 -1.3431 35 1 3.9440 -1.6764 0.6578 36 1 2.7401 -2.8191 1.3321 37 1 3.3180 -0.3742 2.9391 38 1 3.7774 0.5217 1.4713 39 1 2.3532 1.0258 2.4124 40 1 0.3096 0.5625 2.6931 41 1 -1.0216 -1.9212 3.6910 42 1 -0.7426 0.6455 4.9920 43 1 -2.1460 -0.4603 5.3119 44 1 -4.5337 1.7989 2.1924 45 1 -3.0479 2.2655 1.3306 46 1 -6.6990 6.5238 -0.8191 47 1 -3.2522 -1.1039 3.0717 48 1 -2.3637 -0.2966 1.7097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688640757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = -64.905061 kcal Electronic energy + Delta-G solvation = -28249.481766 eV Core-core repulsion = 24430.624789 eV Total energy + Delta-G solvation = -3818.856977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.22149 -41.11632 -39.16673 -38.17843 -34.98997 -34.69252 -32.58577 -32.17588 -31.50213 -29.08204 -27.86774 -27.32261 -26.91539 -25.23313 -24.05181 -22.29848 -21.29624 -20.45868 -20.21878 -19.55574 -18.14625 -17.67227 -17.47106 -17.18443 -16.79940 -16.76681 -16.34880 -16.20831 -15.72632 -15.59806 -14.96030 -14.92709 -14.49251 -14.30738 -14.19015 -13.99712 -13.72181 -13.63709 -13.53034 -13.38606 -13.33757 -13.20022 -13.05872 -13.02729 -12.63938 -12.35768 -12.10228 -11.88461 -11.84488 -11.69618 -11.59972 -11.46062 -11.39438 -11.18857 -11.01680 -10.74397 -10.57772 -10.05868 -9.85057 -9.03106 -8.53446 -6.25106 0.91987 1.30160 1.40160 1.47874 1.51869 1.57610 1.92811 2.05893 2.23285 2.64031 2.84834 3.22285 3.43164 3.49434 3.52081 3.65134 3.85982 4.04358 4.09467 4.26869 4.27993 4.32351 4.37381 4.38482 4.44710 4.47491 4.54471 4.57355 4.62011 4.64090 4.73968 4.79662 4.83667 4.91150 4.94644 5.05041 5.08656 5.14135 5.20897 5.25437 5.29685 5.40879 5.47013 5.49194 5.68580 6.09069 6.42036 6.53232 6.91393 7.01233 7.17645 8.59098 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.002867 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.519338 B = 9765.347829 C =10796.151773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 H 0.092 0.908 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.139 4.139 9 C 0.541 3.459 10 O -0.568 6.568 11 N -0.705 5.705 12 C 0.117 3.883 13 C 0.100 3.900 14 N -0.647 5.647 15 C 0.564 3.436 16 O -0.561 6.561 17 C -0.102 4.102 18 S -0.169 6.169 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.047 3.953 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.260 1.260 25 H -0.259 1.259 26 H -0.237 1.237 27 C 0.082 3.918 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.408 0.592 41 H 0.139 0.861 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.277 0.723 47 H 0.123 0.877 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.204 -17.709 4.450 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.102 4.102 3 H 0.110 0.890 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.142 4.142 7 C -0.084 4.084 8 C -0.196 4.196 9 C 0.329 3.671 10 O -0.447 6.447 11 N -0.356 5.356 12 C 0.011 3.989 13 C -0.022 4.022 14 N -0.383 5.383 15 C 0.353 3.647 16 O -0.440 6.440 17 C -0.253 4.253 18 S 0.058 5.942 19 C -0.677 4.677 20 H 0.078 0.922 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.185 1.185 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.041 4.041 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.245 0.755 41 H 0.156 0.844 42 H 0.099 0.901 43 H 0.141 0.859 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.087 0.913 47 H 0.141 0.859 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.205 -17.014 5.615 27.005 hybrid contribution -0.943 0.282 -1.121 1.492 sum 19.262 -16.731 4.495 25.907 Atomic orbital electron populations 1.22195 0.95639 1.01098 1.02449 1.21826 0.95173 0.99962 0.93191 0.88999 1.22456 1.01532 0.95160 0.96446 1.22447 1.00640 0.96821 0.96081 1.22359 0.99154 0.96342 0.96347 1.21579 0.93660 0.97866 0.95293 1.21940 0.99739 0.98200 0.99765 1.20685 0.82943 0.85655 0.77806 1.90662 1.73339 1.17192 1.63469 1.45760 1.25503 1.11138 1.53220 1.22181 0.84318 1.00151 0.92286 1.23576 0.94183 0.91120 0.93331 1.49634 1.53983 1.07531 1.27200 1.19411 0.78271 0.80737 0.86299 1.90700 1.59135 1.50056 1.44072 1.23151 1.02735 0.99475 0.99889 1.84663 1.68345 1.10708 1.30505 1.22433 1.38080 1.00777 1.06447 0.92200 1.25566 0.93118 1.00924 0.96279 1.70020 1.33988 1.27189 1.24252 0.85867 0.79311 0.79806 0.81403 1.18490 1.18329 1.16050 1.23927 0.98843 0.82979 0.98375 0.92148 0.92418 0.93555 0.91714 0.89913 0.93197 0.90236 0.89175 0.91655 0.91863 0.89707 0.91858 0.75508 0.84378 0.90069 0.85903 0.87669 0.87589 0.91313 0.85938 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 7.80 71.98 0.56 -2.26 16 2 C -0.08 -1.21 3.16 -10.07 -0.03 -1.25 16 3 H 0.09 1.20 7.67 -2.39 -0.02 1.19 16 4 C -0.12 -1.61 6.37 31.67 0.20 -1.41 16 5 C -0.12 -1.79 6.91 31.89 0.22 -1.57 16 6 C -0.10 -1.51 5.67 31.67 0.18 -1.33 16 7 C -0.08 -1.17 0.81 -52.20 -0.04 -1.21 16 8 C -0.14 -1.51 7.99 71.98 0.58 -0.93 16 9 C 0.54 9.90 4.61 87.66 0.40 10.31 16 10 O -0.57 -13.93 15.01 -3.03 -0.05 -13.97 16 11 N -0.70 -11.05 3.60 -441.53 -1.59 -12.63 16 12 C 0.12 1.68 4.63 45.55 0.21 1.89 16 13 C 0.10 1.59 8.38 83.17 0.70 2.28 16 14 N -0.65 -14.93 3.69 -857.93 -3.16 -18.09 16 15 C 0.56 19.31 8.10 87.66 0.71 20.02 16 16 O -0.56 -23.77 16.64 -3.03 -0.05 -23.82 16 17 C -0.10 -3.87 5.98 71.24 0.43 -3.45 16 18 S -0.17 -8.48 18.55 -56.49 -1.05 -9.52 16 19 C -0.53 -30.74 10.04 67.96 0.68 -30.06 16 20 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 21 C 0.05 2.72 5.50 84.86 0.47 3.19 16 22 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 23 Si 0.91 44.58 27.74 68.60 1.90 46.48 16 24 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 27 C 0.08 1.34 8.26 83.26 0.69 2.02 16 28 H 0.06 1.12 5.77 -2.39 -0.01 1.11 16 29 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 30 H 0.05 0.94 7.14 -2.39 -0.02 0.92 16 31 H 0.06 0.95 7.81 -2.39 -0.02 0.93 16 32 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.97 7.85 -2.39 -0.02 0.95 16 36 H 0.06 1.20 6.91 -2.39 -0.02 1.18 16 37 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 39 H 0.06 0.66 7.22 -2.39 -0.02 0.65 16 40 H 0.41 6.23 7.04 -92.71 -0.65 5.58 16 41 H 0.14 1.81 7.41 -2.38 -0.02 1.79 16 42 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 44 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.11 3.77 8.14 -2.40 -0.02 3.76 16 46 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.08 1.42 7.97 -2.39 -0.02 1.40 16 Total: -1.00 -75.77 392.99 2.53 -73.24 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.27 Total: 17.37 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.95 Total: -3.77 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -4.45 Total: -86.01 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.10 Total: -37.79 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.52 kcal Total: -75.77 2.53 -73.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688640757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.337 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds