Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.05157 * 2 1 4 4 C 1.54264 * 110.03081 * 121.41418 * 2 1 3 5 5 C 1.54886 * 104.19477 * 142.89855 * 4 2 1 6 6 C 1.55008 * 102.75399 * 322.04341 * 5 4 2 7 7 C 1.53872 * 110.03082 * 238.58174 * 2 1 3 8 8 C 1.52998 * 110.03335 * 0.04846 * 7 2 1 9 9 C 1.50699 * 110.03135 * 121.43134 * 7 2 1 10 10 O 1.21285 * 119.99962 * 359.30824 * 9 7 2 11 11 N 1.34780 * 120.00255 * 179.30614 * 9 7 2 12 12 C 1.46499 * 120.00046 * 179.97438 * 11 9 7 13 13 C 1.53946 * 113.73810 * 155.00208 * 12 11 9 14 14 N 1.47580 * 86.24073 * 137.89593 * 13 12 11 15 15 C 1.34775 * 134.49629 * 155.42618 * 14 13 12 16 16 O 1.21285 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00193 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47021 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99967 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99599 * 359.97438 * 19 18 17 21 21 C 1.38792 * 120.00136 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99797 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47129 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47131 * 119.99948 * 23 21 19 26 26 H 1.48500 * 109.47464 * 239.99732 * 23 21 19 27 27 C 1.47812 * 90.92375 * 335.45714 * 14 13 12 28 28 H 1.08996 * 109.46871 * 181.42139 * 1 2 3 29 29 H 1.08997 * 109.47354 * 301.41813 * 1 2 3 30 30 H 1.09002 * 109.47076 * 61.42005 * 1 2 3 31 31 H 1.09008 * 110.48653 * 261.57098 * 4 2 1 32 32 H 1.08998 * 110.49332 * 24.21495 * 4 2 1 33 33 H 1.09003 * 110.75901 * 80.36994 * 5 4 2 34 34 H 1.09004 * 110.75823 * 203.55834 * 5 4 2 35 35 H 1.09004 * 110.50724 * 279.30131 * 6 5 4 36 36 H 1.08996 * 110.52831 * 156.61526 * 6 5 4 37 37 H 1.08998 * 109.46807 * 180.69253 * 8 7 2 38 38 H 1.09001 * 109.46690 * 300.68827 * 8 7 2 39 39 H 1.09000 * 109.47089 * 60.69275 * 8 7 2 40 40 H 0.97004 * 119.99586 * 0.02562 * 11 9 7 41 41 H 1.08997 * 112.94489 * 23.40708 * 12 11 9 42 42 H 1.09002 * 113.76900 * 252.25295 * 13 12 11 43 43 H 1.09000 * 113.76969 * 23.53717 * 13 12 11 44 44 H 1.08997 * 109.47041 * 299.99450 * 17 15 14 45 45 H 1.09000 * 109.47579 * 59.99837 * 17 15 14 46 46 H 0.97007 * 120.00265 * 179.97438 * 22 21 19 47 47 H 1.08996 * 113.67199 * 270.23445 * 27 14 13 48 48 H 1.08996 * 113.93703 * 138.88096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3137 -1.5006 0.7192 6 6 2.8872 -1.9413 -0.7044 7 6 2.0571 -0.7536 -1.2337 8 6 0.8862 -1.2659 -2.0747 9 6 2.9276 0.1564 -2.0615 10 8 3.1059 1.3050 -1.7152 11 7 3.5079 -0.3061 -3.1866 12 6 4.3536 0.5787 -3.9916 13 6 5.3971 -0.1672 -4.8430 14 7 5.0474 0.7760 -5.9228 15 6 5.6876 1.2431 -7.0130 16 8 6.8148 0.8702 -7.2606 17 6 5.0032 2.2297 -7.9237 18 16 6.1129 2.6631 -9.2864 19 6 5.0888 3.7949 -10.1668 20 1 4.0966 4.0199 -9.8041 21 6 5.5570 4.3972 -11.3262 22 7 6.7660 4.1226 -11.7684 23 14 4.4711 5.5965 -12.2599 24 1 3.1682 5.7322 -11.5605 25 1 5.1383 6.9217 -12.3240 26 1 4.2438 5.0897 -13.6371 27 6 3.7140 1.0018 -5.3264 28 1 -0.3633 -1.0273 0.0255 29 1 -0.3634 0.5357 0.8770 30 1 -0.3633 0.4916 -0.9025 31 1 2.3297 -0.0535 2.0255 32 1 1.3143 -1.4659 1.5968 33 1 4.1710 -0.8289 0.6752 34 1 3.5345 -2.3659 1.3443 35 1 2.2765 -2.8430 -0.6581 36 1 3.7630 -2.1045 -1.3324 37 1 1.2695 -1.8083 -2.9389 38 1 0.2699 -1.9325 -1.4714 39 1 0.2850 -0.4219 -2.4129 40 1 3.3649 -1.2247 -3.4637 41 1 4.7670 1.4086 -3.4184 42 1 6.4190 -0.0594 -4.4793 43 1 5.1295 -1.2014 -5.0592 44 1 4.0928 1.7835 -8.3240 45 1 4.7505 3.1286 -7.3614 46 1 7.0932 4.5433 -12.5789 47 1 2.9510 0.3116 -5.6863 48 1 3.3903 2.0424 -5.3480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688640759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = -75.098424 kcal Electronic energy + Delta-G solvation = -27051.205822 eV Core-core repulsion = 23231.906828 eV Total energy + Delta-G solvation = -3819.298994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96880 -41.07028 -39.19100 -38.24460 -35.09729 -34.61594 -32.72370 -32.16588 -31.39616 -28.88717 -27.70101 -27.18874 -26.31267 -26.18628 -23.60380 -22.32835 -21.50373 -20.57644 -19.61614 -19.38398 -18.25393 -17.92940 -17.81502 -16.98551 -16.89043 -16.64080 -16.32385 -15.86823 -15.81546 -15.12569 -14.93364 -14.79413 -14.65394 -14.49241 -14.23361 -14.07969 -13.81902 -13.73738 -13.66939 -13.19538 -13.15501 -12.92962 -12.81580 -12.62024 -12.47741 -12.43101 -12.18839 -11.86805 -11.74951 -11.64877 -11.56459 -11.49481 -11.23832 -11.18424 -11.10238 -10.64881 -10.33217 -10.19814 -9.86123 -8.71514 -8.37596 -6.16636 1.14327 1.39082 1.39947 1.47779 1.53587 1.58413 1.78788 2.23747 2.26602 2.96566 3.10740 3.29138 3.47212 3.52378 3.63061 3.74213 3.85366 3.98427 4.11305 4.22492 4.31446 4.36506 4.40690 4.41217 4.45508 4.49524 4.56458 4.60904 4.63969 4.67113 4.78326 4.84590 4.89566 4.94941 5.05747 5.08604 5.11865 5.20906 5.23479 5.35876 5.38391 5.39128 5.41758 5.49565 5.63067 6.17223 6.41273 6.53553 7.02152 7.03587 7.22110 8.72003 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.001923 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.525770 B =14556.944090 C =15326.849731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.108 4.108 7 C -0.076 4.076 8 C -0.140 4.140 9 C 0.526 3.474 10 O -0.578 6.578 11 N -0.701 5.701 12 C 0.127 3.873 13 C 0.104 3.896 14 N -0.647 5.647 15 C 0.559 3.441 16 O -0.564 6.564 17 C -0.120 4.120 18 S -0.148 6.148 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 1.001 2.999 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.272 1.272 27 C 0.090 3.910 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.420 0.580 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.272 0.728 47 H 0.118 0.882 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.805 -16.733 27.181 36.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.167 4.167 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.197 4.197 9 C 0.314 3.686 10 O -0.457 6.457 11 N -0.354 5.354 12 C 0.020 3.980 13 C -0.019 4.019 14 N -0.384 5.384 15 C 0.348 3.652 16 O -0.443 6.443 17 C -0.271 4.271 18 S 0.079 5.921 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.197 1.197 27 C -0.033 4.033 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.259 0.741 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.135 0.865 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.787 -16.375 26.764 34.686 hybrid contribution -1.213 1.217 -0.707 1.858 sum -16.000 -15.158 26.057 34.129 Atomic orbital electron populations 1.21962 0.93683 1.02747 1.01478 1.21800 0.96703 0.99500 0.93208 0.92035 1.22438 0.97610 0.98917 0.96459 1.22533 0.97240 1.00172 0.96775 1.22562 0.99480 0.96481 0.96043 1.21475 0.95834 0.95287 0.95332 1.22043 0.96227 1.01616 0.99786 1.21126 0.79138 0.87919 0.80443 1.90688 1.62761 1.21078 1.71193 1.45699 1.49366 1.15895 1.24424 1.22682 0.90958 0.94367 0.90010 1.23671 1.00345 0.95349 0.82516 1.49681 1.18715 1.45842 1.24205 1.19656 0.85166 0.80928 0.79451 1.90697 1.20370 1.60646 1.72545 1.23275 1.03396 1.01041 0.99415 1.85556 1.23956 1.57424 1.25183 1.23211 1.03381 1.29884 1.12915 0.90020 1.26151 0.97010 0.98656 0.97373 1.70187 1.18257 1.43164 1.23071 0.84880 0.78116 0.77079 0.77709 1.18109 1.19891 1.19691 1.24016 0.85832 1.03982 0.89474 0.90454 0.92948 0.92950 0.92480 0.89753 0.93477 0.89755 0.87888 0.90646 0.90659 0.89214 0.92594 0.74119 0.87294 0.89906 0.86371 0.87459 0.87972 0.91901 0.86451 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.89 71.98 0.57 -0.82 16 2 C -0.09 -1.22 3.10 -10.07 -0.03 -1.26 16 3 H 0.06 1.27 6.39 -2.39 -0.02 1.26 16 4 C -0.12 -1.20 6.36 31.67 0.20 -1.00 16 5 C -0.13 -1.23 6.91 31.93 0.22 -1.01 16 6 C -0.11 -0.71 5.87 31.71 0.19 -0.52 16 7 C -0.08 -0.78 0.77 -52.20 -0.04 -0.82 16 8 C -0.14 -0.80 7.10 71.98 0.51 -0.29 16 9 C 0.53 8.62 6.44 87.66 0.56 9.18 16 10 O -0.58 -15.25 14.81 -3.05 -0.05 -15.30 16 11 N -0.70 -7.99 4.95 -446.53 -2.21 -10.20 16 12 C 0.13 2.10 4.44 46.63 0.21 2.31 16 13 C 0.10 1.91 8.58 86.48 0.74 2.65 16 14 N -0.65 -17.37 3.62 -833.96 -3.02 -20.39 16 15 C 0.56 21.87 8.08 87.66 0.71 22.57 16 16 O -0.56 -27.28 16.59 -3.05 -0.05 -27.33 16 17 C -0.12 -5.02 5.91 71.24 0.42 -4.60 16 18 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 19 C -0.55 -31.71 9.50 67.95 0.65 -31.07 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 23 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 C 0.09 1.64 8.43 86.44 0.73 2.37 16 28 H 0.08 0.45 6.70 -2.39 -0.02 0.44 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.58 6.76 -2.39 -0.02 0.56 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.08 0.59 7.84 -2.39 -0.02 0.57 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.10 0.25 7.85 -2.39 -0.02 0.23 16 36 H 0.07 0.43 7.45 -2.39 -0.02 0.42 16 37 H 0.07 0.18 7.55 -2.39 -0.02 0.17 16 38 H 0.09 0.26 6.68 -2.39 -0.02 0.24 16 39 H 0.06 0.46 6.78 -2.39 -0.02 0.45 16 40 H 0.42 1.98 7.97 -92.70 -0.74 1.24 16 41 H 0.11 2.35 7.46 -2.39 -0.02 2.34 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.12 1.45 8.12 -2.39 -0.02 1.43 16 44 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 45 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 46 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 47 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -84.16 396.43 2.15 -82.01 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.22 Total: 11.92 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 6.10 Total: -1.09 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -4.94 Total: -86.70 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -84.16 2.15 -82.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688640759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.910 kcal (2) G-P(sol) polarization free energy of solvation -84.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds