Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.05819 * 2 1 4 4 C 1.54269 * 110.03186 * 121.41598 * 2 1 3 5 5 C 1.54897 * 104.19325 * 142.89364 * 4 2 1 6 6 C 1.55010 * 102.75691 * 322.04785 * 5 4 2 7 7 C 1.53875 * 110.03316 * 238.58483 * 2 1 3 8 8 C 1.52995 * 110.03279 * 121.43316 * 7 2 1 9 9 C 1.50695 * 110.03183 * 0.04958 * 7 2 1 10 10 O 1.21286 * 119.99925 * 248.75384 * 9 7 2 11 11 N 1.34778 * 120.00328 * 68.74876 * 9 7 2 12 12 C 1.46494 * 120.00293 * 184.49414 * 11 9 7 13 13 C 1.53942 * 113.74523 * 253.74180 * 12 11 9 14 14 N 1.47808 * 86.03794 * 222.08325 * 13 12 11 15 15 C 1.34784 * 134.45938 * 204.64166 * 14 13 12 16 16 O 1.21276 * 120.00018 * 179.87145 * 15 14 13 17 17 C 1.50699 * 119.99637 * 359.86895 * 15 14 13 18 18 S 1.81000 * 109.47012 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00022 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99666 * 359.97438 * 19 18 17 21 21 C 1.38792 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00250 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00026 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47116 * 59.99744 * 23 21 19 25 25 H 1.48498 * 109.47472 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47365 * 299.99666 * 23 21 19 27 27 C 1.47583 * 91.05198 * 24.55054 * 14 13 12 28 28 H 1.08998 * 109.47363 * 175.33175 * 1 2 3 29 29 H 1.09002 * 109.47058 * 295.33773 * 1 2 3 30 30 H 1.08999 * 109.46901 * 55.33119 * 1 2 3 31 31 H 1.08995 * 110.48534 * 261.57251 * 4 2 1 32 32 H 1.09001 * 110.48293 * 24.08732 * 4 2 1 33 33 H 1.08997 * 110.75586 * 80.37700 * 5 4 2 34 34 H 1.09005 * 110.75187 * 203.56094 * 5 4 2 35 35 H 1.09002 * 110.50435 * 279.30010 * 6 5 4 36 36 H 1.08995 * 110.52720 * 156.61506 * 6 5 4 37 37 H 1.08995 * 109.47118 * 299.30808 * 8 7 2 38 38 H 1.09001 * 109.47394 * 179.30871 * 8 7 2 39 39 H 1.09001 * 109.47756 * 59.30947 * 8 7 2 40 40 H 0.97001 * 119.99635 * 4.50315 * 11 9 7 41 41 H 1.09002 * 112.94556 * 25.34223 * 12 11 9 42 42 H 1.08996 * 113.77271 * 336.35680 * 13 12 11 43 43 H 1.09005 * 113.76772 * 107.74677 * 13 12 11 44 44 H 1.08992 * 109.47600 * 300.00360 * 17 15 14 45 45 H 1.09010 * 109.46812 * 60.00337 * 17 15 14 46 46 H 0.96996 * 119.99980 * 180.02562 * 22 21 19 47 47 H 1.08991 * 113.77062 * 221.14757 * 27 14 13 48 48 H 1.08998 * 113.76659 * 89.74930 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3137 -1.5008 0.7191 6 6 2.8872 -1.9413 -0.7046 7 6 2.0571 -0.7535 -1.2337 8 6 2.9409 0.1703 -2.0741 9 6 0.9038 -1.2581 -2.0621 10 8 0.6839 -2.4487 -2.1340 11 7 0.1166 -0.3863 -2.7231 12 6 -1.0621 -0.8676 -3.4478 13 6 -0.8921 -0.8668 -4.9778 14 7 -2.2713 -0.3376 -5.0280 15 6 -3.2550 -0.3518 -5.9493 16 8 -4.3192 0.1775 -5.7083 17 6 -3.0323 -1.0254 -7.2788 18 16 -4.5271 -0.8762 -8.2886 19 6 -4.0015 -1.7249 -9.7405 20 1 -3.0068 -2.1424 -9.7917 21 6 -4.8655 -1.8560 -10.8188 22 7 -6.0777 -1.3467 -10.7566 23 14 -4.3081 -2.7552 -12.3584 24 1 -3.9511 -4.1546 -12.0124 25 1 -5.4081 -2.7576 -13.3559 26 1 -3.1220 -2.0687 -12.9305 27 6 -2.1397 0.2104 -3.6640 28 1 -0.3634 -1.0242 -0.0836 29 1 -0.3633 0.4398 0.9288 30 1 -0.3633 0.5846 -0.8452 31 1 2.3296 -0.0536 2.0254 32 1 1.3133 -1.4643 1.5980 33 1 4.1710 -0.8291 0.6751 34 1 3.5343 -2.3661 1.3442 35 1 2.2764 -2.8430 -0.6583 36 1 3.7629 -2.1045 -1.3326 37 1 2.3549 1.0250 -2.4122 38 1 3.3190 -0.3757 -2.9383 39 1 3.7784 0.5200 -1.4705 40 1 0.3306 0.5598 -2.7191 41 1 -1.4523 -1.8044 -3.0500 42 1 -0.1389 -0.1651 -5.3359 43 1 -0.7865 -1.8625 -5.4086 44 1 -2.1974 -0.5488 -7.7924 45 1 -2.8063 -2.0797 -7.1186 46 1 -6.6816 -1.4387 -11.5100 47 1 -3.0282 0.0733 -3.0478 48 1 -1.7537 1.2293 -3.6353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688640760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -47.896636 kcal Electronic energy + Delta-G solvation = -27281.088046 eV Core-core repulsion = 23462.968610 eV Total energy + Delta-G solvation = -3818.119436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35319 -40.03457 -38.04273 -37.25588 -34.32758 -32.43293 -31.94361 -31.56746 -30.16306 -27.65424 -26.75791 -26.31726 -25.45692 -24.76263 -22.95061 -21.34259 -21.06394 -19.65143 -18.93632 -17.75015 -17.03535 -16.95640 -16.56875 -16.33725 -15.61347 -15.39427 -14.91497 -14.80306 -14.54027 -14.31675 -13.99954 -13.79250 -13.58730 -13.29692 -13.07366 -13.00202 -12.91299 -12.76553 -12.60690 -12.44520 -12.39272 -11.97321 -11.80879 -11.48943 -11.41510 -11.21199 -11.05632 -11.04212 -11.03732 -11.00214 -10.93593 -10.77335 -9.99832 -9.83898 -9.51441 -9.30033 -9.06275 -8.68110 -8.25748 -6.51440 -6.21809 -3.92980 2.30144 2.48697 2.86426 3.10871 3.23789 3.25142 3.29032 3.53787 3.95729 3.99693 4.12587 4.17494 4.20031 4.50308 4.57920 4.75639 4.77006 4.81475 4.84963 4.90076 4.97208 5.02209 5.10070 5.13236 5.16868 5.26659 5.33909 5.34859 5.43124 5.45286 5.47044 5.52595 5.54325 5.57426 5.63619 5.68582 5.74341 5.80388 5.87800 5.91769 5.94486 5.99392 6.13549 6.15856 7.11147 7.59109 7.73458 7.88769 8.34862 8.48686 9.23245 10.85576 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.001954 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.803593 B =14323.539542 C =15011.677995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.083 4.083 8 C -0.140 4.140 9 C 0.535 3.465 10 O -0.533 6.533 11 N -0.721 5.721 12 C 0.113 3.887 13 C 0.091 3.909 14 N -0.649 5.649 15 C 0.560 3.440 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.102 3.898 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.089 0.911 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.845 4.331 24.483 33.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.147 4.147 7 C -0.086 4.086 8 C -0.197 4.197 9 C 0.321 3.679 10 O -0.409 6.409 11 N -0.374 5.374 12 C 0.007 3.993 13 C -0.034 4.034 14 N -0.389 5.389 15 C 0.350 3.650 16 O -0.386 6.386 17 C -0.296 4.296 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.021 4.021 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.239 0.761 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.713 4.280 24.526 31.756 hybrid contribution 1.711 -0.614 -1.420 2.307 sum 21.424 3.667 23.106 31.723 Atomic orbital electron populations 1.22197 0.94531 1.02492 1.02494 1.21810 0.96053 0.99251 0.92989 0.89964 1.22449 0.97547 0.99058 0.96722 1.22506 0.97524 1.00022 0.96119 1.22427 0.99109 0.97395 0.95757 1.21566 0.94073 0.97664 0.95331 1.21921 0.99535 0.98525 0.99723 1.20425 0.82886 0.86246 0.78307 1.90713 1.71418 1.16012 1.62717 1.46094 1.27248 1.11024 1.52992 1.23119 0.85440 0.99532 0.91254 1.23695 0.83936 1.00531 0.95246 1.49790 1.14007 1.58679 1.16385 1.20028 0.82170 0.78965 0.83878 1.90718 1.24744 1.44844 1.78284 1.23480 1.07654 1.02814 0.95622 1.85388 1.11802 1.74455 1.11678 1.22813 1.02803 1.41674 1.01092 0.90954 1.24994 0.94536 0.95516 0.98528 1.70008 1.05930 1.42641 1.31698 0.86213 0.78297 0.79867 0.81062 1.19903 1.20788 1.19934 1.23369 0.98163 0.97155 0.83459 0.92227 0.92177 0.91692 0.91428 0.91247 0.91479 0.91276 0.89433 0.91205 0.92159 0.91849 0.91190 0.76145 0.85550 0.89578 0.89299 0.89302 0.89195 0.92107 0.89274 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 7.81 37.16 0.29 -0.64 16 2 C -0.08 -0.42 3.16 -89.50 -0.28 -0.70 16 3 H 0.08 0.32 7.67 -51.93 -0.40 -0.08 16 4 C -0.12 -0.62 6.36 -25.07 -0.16 -0.78 16 5 C -0.12 -0.65 6.91 -24.67 -0.17 -0.82 16 6 C -0.11 -0.75 5.75 -25.00 -0.14 -0.90 16 7 C -0.08 -0.51 0.82 -154.54 -0.13 -0.64 16 8 C -0.14 -0.62 7.96 37.16 0.30 -0.32 16 9 C 0.53 4.65 4.59 -10.99 -0.05 4.60 16 10 O -0.53 -6.86 15.05 5.55 0.08 -6.78 16 11 N -0.72 -4.92 3.60 -55.35 -0.20 -5.12 16 12 C 0.11 1.02 4.37 -70.15 -0.31 0.71 16 13 C 0.09 0.94 8.43 -2.84 -0.02 0.92 16 14 N -0.65 -9.16 3.61 -178.35 -0.64 -9.80 16 15 C 0.56 10.95 8.07 -10.98 -0.09 10.87 16 16 O -0.51 -12.04 16.59 5.56 0.09 -11.94 16 17 C -0.15 -3.04 5.91 36.01 0.21 -2.83 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 23 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.10 1.03 8.59 -2.96 -0.03 1.01 16 28 H 0.06 0.48 7.17 -51.93 -0.37 0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 5.99 -51.93 -0.31 0.02 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.42 7.85 -51.93 -0.41 0.01 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.81 6.81 -51.93 -0.35 0.46 16 36 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 37 H 0.06 0.19 7.18 -51.93 -0.37 -0.18 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.40 1.76 7.01 -40.82 -0.29 1.48 16 41 H 0.13 1.36 7.57 -51.93 -0.39 0.96 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -36.37 396.11 -9.50 -45.87 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.92 Total: -2.65 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.38 Total: -2.65 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.11 Total: -40.51 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.37 -9.50 -45.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688640760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.026 kcal (2) G-P(sol) polarization free energy of solvation -36.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds