Wall clock time and date at job start Sat Apr 11 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.05819 * 2 1 4 4 C 1.54269 * 110.03186 * 121.41598 * 2 1 3 5 5 C 1.54897 * 104.19325 * 142.89364 * 4 2 1 6 6 C 1.55010 * 102.75691 * 322.04785 * 5 4 2 7 7 C 1.53875 * 110.03316 * 238.58483 * 2 1 3 8 8 C 1.52995 * 110.03279 * 121.43316 * 7 2 1 9 9 C 1.50695 * 110.03183 * 0.04958 * 7 2 1 10 10 O 1.21286 * 119.99925 * 248.75384 * 9 7 2 11 11 N 1.34778 * 120.00328 * 68.74876 * 9 7 2 12 12 C 1.46494 * 120.00293 * 184.49414 * 11 9 7 13 13 C 1.53942 * 113.74523 * 253.74180 * 12 11 9 14 14 N 1.47808 * 86.03794 * 222.08325 * 13 12 11 15 15 C 1.34784 * 134.45938 * 204.64166 * 14 13 12 16 16 O 1.21276 * 120.00018 * 179.87145 * 15 14 13 17 17 C 1.50699 * 119.99637 * 359.86895 * 15 14 13 18 18 S 1.81000 * 109.47012 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00022 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99666 * 359.97438 * 19 18 17 21 21 C 1.38792 * 119.99842 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00250 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00026 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47116 * 59.99744 * 23 21 19 25 25 H 1.48498 * 109.47472 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47365 * 299.99666 * 23 21 19 27 27 C 1.47583 * 91.05198 * 24.55054 * 14 13 12 28 28 H 1.08998 * 109.47363 * 175.33175 * 1 2 3 29 29 H 1.09002 * 109.47058 * 295.33773 * 1 2 3 30 30 H 1.08999 * 109.46901 * 55.33119 * 1 2 3 31 31 H 1.08995 * 110.48534 * 261.57251 * 4 2 1 32 32 H 1.09001 * 110.48293 * 24.08732 * 4 2 1 33 33 H 1.08997 * 110.75586 * 80.37700 * 5 4 2 34 34 H 1.09005 * 110.75187 * 203.56094 * 5 4 2 35 35 H 1.09002 * 110.50435 * 279.30010 * 6 5 4 36 36 H 1.08995 * 110.52720 * 156.61506 * 6 5 4 37 37 H 1.08995 * 109.47118 * 299.30808 * 8 7 2 38 38 H 1.09001 * 109.47394 * 179.30871 * 8 7 2 39 39 H 1.09001 * 109.47756 * 59.30947 * 8 7 2 40 40 H 0.97001 * 119.99635 * 4.50315 * 11 9 7 41 41 H 1.09002 * 112.94556 * 25.34223 * 12 11 9 42 42 H 1.08996 * 113.77271 * 336.35680 * 13 12 11 43 43 H 1.09005 * 113.76772 * 107.74677 * 13 12 11 44 44 H 1.08992 * 109.47600 * 300.00360 * 17 15 14 45 45 H 1.09010 * 109.46812 * 60.00337 * 17 15 14 46 46 H 0.96996 * 119.99980 * 180.02562 * 22 21 19 47 47 H 1.08991 * 113.77062 * 221.14757 * 27 14 13 48 48 H 1.08998 * 113.76659 * 89.74930 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3137 -1.5008 0.7191 6 6 2.8872 -1.9413 -0.7046 7 6 2.0571 -0.7535 -1.2337 8 6 2.9409 0.1703 -2.0741 9 6 0.9038 -1.2581 -2.0621 10 8 0.6839 -2.4487 -2.1340 11 7 0.1166 -0.3863 -2.7231 12 6 -1.0621 -0.8676 -3.4478 13 6 -0.8921 -0.8668 -4.9778 14 7 -2.2713 -0.3376 -5.0280 15 6 -3.2550 -0.3518 -5.9493 16 8 -4.3192 0.1775 -5.7083 17 6 -3.0323 -1.0254 -7.2788 18 16 -4.5271 -0.8762 -8.2886 19 6 -4.0015 -1.7249 -9.7405 20 1 -3.0068 -2.1424 -9.7917 21 6 -4.8655 -1.8560 -10.8188 22 7 -6.0777 -1.3467 -10.7566 23 14 -4.3081 -2.7552 -12.3584 24 1 -3.9511 -4.1546 -12.0124 25 1 -5.4081 -2.7576 -13.3559 26 1 -3.1220 -2.0687 -12.9305 27 6 -2.1397 0.2104 -3.6640 28 1 -0.3634 -1.0242 -0.0836 29 1 -0.3633 0.4398 0.9288 30 1 -0.3633 0.5846 -0.8452 31 1 2.3296 -0.0536 2.0254 32 1 1.3133 -1.4643 1.5980 33 1 4.1710 -0.8291 0.6751 34 1 3.5343 -2.3661 1.3442 35 1 2.2764 -2.8430 -0.6583 36 1 3.7629 -2.1045 -1.3326 37 1 2.3549 1.0250 -2.4122 38 1 3.3190 -0.3757 -2.9383 39 1 3.7784 0.5200 -1.4705 40 1 0.3306 0.5598 -2.7191 41 1 -1.4523 -1.8044 -3.0500 42 1 -0.1389 -0.1651 -5.3359 43 1 -0.7865 -1.8625 -5.4086 44 1 -2.1974 -0.5488 -7.7924 45 1 -2.8063 -2.0797 -7.1186 46 1 -6.6816 -1.4387 -11.5100 47 1 -3.0282 0.0733 -3.0478 48 1 -1.7537 1.2293 -3.6353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688640760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:21 Heat of formation + Delta-G solvation = -72.045797 kcal Electronic energy + Delta-G solvation = -27282.135232 eV Core-core repulsion = 23462.968610 eV Total energy + Delta-G solvation = -3819.166622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06950 -41.06411 -39.12289 -38.19329 -35.15151 -34.61191 -32.43654 -32.22704 -31.46494 -28.86591 -27.69543 -27.23268 -27.15884 -25.25517 -23.73460 -22.15652 -21.50346 -20.68594 -19.92953 -19.52440 -18.18115 -17.84724 -17.43500 -17.00809 -16.89782 -16.76368 -16.42101 -15.92717 -15.71795 -15.42450 -14.83799 -14.77397 -14.38739 -14.29431 -14.20386 -13.81537 -13.75330 -13.62410 -13.47440 -13.34354 -13.19943 -13.09112 -12.90758 -12.88413 -12.64542 -12.54356 -12.33543 -11.84671 -11.78128 -11.64117 -11.48888 -11.45817 -11.37544 -11.15344 -11.09040 -10.64168 -10.33827 -10.10996 -9.84676 -8.71307 -8.36939 -6.16260 1.14677 1.39208 1.42505 1.48363 1.51618 1.61209 1.79765 2.24624 2.28566 2.96914 3.11143 3.30120 3.47095 3.52581 3.58761 3.72105 3.85345 3.98640 4.11888 4.22615 4.34374 4.36937 4.37340 4.38538 4.41049 4.50295 4.56297 4.57616 4.60707 4.68058 4.79488 4.86249 4.92158 4.98002 5.00466 5.05736 5.07357 5.24142 5.26749 5.29289 5.35095 5.38722 5.42174 5.48311 5.55448 6.17036 6.41896 6.54548 7.02712 7.03849 7.23930 8.72109 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.001954 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.803593 B =14323.539542 C =15011.677995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.078 4.078 3 H 0.108 0.892 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.079 4.079 8 C -0.138 4.138 9 C 0.534 3.466 10 O -0.580 6.580 11 N -0.703 5.703 12 C 0.129 3.871 13 C 0.089 3.911 14 N -0.647 5.647 15 C 0.559 3.441 16 O -0.564 6.564 17 C -0.121 4.121 18 S -0.147 6.147 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 1.000 3.000 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.105 3.895 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.419 0.581 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.272 0.728 47 H 0.084 0.916 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.061 5.517 24.954 35.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.097 4.097 3 H 0.126 0.874 4 C -0.160 4.160 5 C -0.157 4.157 6 C -0.152 4.152 7 C -0.082 4.082 8 C -0.196 4.196 9 C 0.322 3.678 10 O -0.459 6.459 11 N -0.357 5.357 12 C 0.022 3.978 13 C -0.034 4.034 14 N -0.384 5.384 15 C 0.348 3.652 16 O -0.442 6.442 17 C -0.272 4.272 18 S 0.080 5.920 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.821 3.179 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.017 4.017 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.259 0.741 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 23.000 5.496 25.045 34.445 hybrid contribution 0.814 -1.000 -1.394 1.899 sum 23.814 4.496 23.651 33.863 Atomic orbital electron populations 1.22187 0.95259 1.00853 1.03324 1.21854 0.95355 1.00305 0.92140 0.87394 1.22471 0.97104 0.99103 0.97290 1.22500 0.98116 1.00318 0.94750 1.22419 0.98845 0.96670 0.97257 1.21600 0.93157 0.97789 0.95638 1.21955 0.99862 0.98437 0.99310 1.20956 0.83242 0.85655 0.77927 1.90704 1.72698 1.18213 1.64298 1.45884 1.26038 1.11747 1.51991 1.22664 0.85918 0.98553 0.90687 1.24028 0.82277 1.01094 0.96032 1.49702 1.14351 1.57679 1.16688 1.19651 0.82617 0.78789 0.84170 1.90693 1.26983 1.47269 1.79285 1.23278 1.04110 1.04068 0.95714 1.85539 1.17547 1.75042 1.13883 1.23148 1.03313 1.41783 1.01371 0.90040 1.26146 0.94438 0.96208 1.02332 1.70173 1.07393 1.44108 1.32949 0.84991 0.78171 0.78639 0.76116 1.18781 1.20206 1.18525 1.23669 0.98368 0.99052 0.80660 0.95068 0.91459 0.90753 0.89802 0.92887 0.89702 0.91518 0.92609 0.90926 0.90247 0.92618 0.89658 0.74113 0.87406 0.86572 0.89605 0.87523 0.88024 0.91894 0.89756 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 7.81 71.98 0.56 -1.01 16 2 C -0.08 -0.59 3.16 -10.07 -0.03 -0.62 16 3 H 0.11 0.34 7.67 -2.39 -0.02 0.32 16 4 C -0.12 -1.04 6.36 31.67 0.20 -0.84 16 5 C -0.12 -1.05 6.91 31.93 0.22 -0.83 16 6 C -0.11 -1.50 5.75 31.71 0.18 -1.31 16 7 C -0.08 -0.81 0.82 -52.20 -0.04 -0.86 16 8 C -0.14 -0.73 7.96 71.98 0.57 -0.16 16 9 C 0.53 8.65 4.59 87.66 0.40 9.06 16 10 O -0.58 -15.21 15.05 -3.05 -0.05 -15.25 16 11 N -0.70 -7.87 3.60 -447.41 -1.61 -9.48 16 12 C 0.13 2.11 4.37 46.75 0.20 2.31 16 13 C 0.09 1.64 8.43 86.44 0.73 2.37 16 14 N -0.65 -17.33 3.61 -836.55 -3.02 -20.35 16 15 C 0.56 21.85 8.07 87.66 0.71 22.56 16 16 O -0.56 -27.21 16.59 -3.02 -0.05 -27.26 16 17 C -0.12 -5.05 5.91 71.24 0.42 -4.63 16 18 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 19 C -0.55 -31.90 9.50 67.95 0.65 -31.25 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 23 Si 1.00 44.07 29.55 68.60 2.03 46.09 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 C 0.10 1.89 8.59 86.49 0.74 2.63 16 28 H 0.03 0.49 7.17 -2.39 -0.02 0.47 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.55 5.99 -2.39 -0.01 0.54 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.62 7.85 -2.39 -0.02 0.60 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.06 1.10 6.81 -2.39 -0.02 1.08 16 36 H 0.07 0.87 7.84 -2.39 -0.02 0.85 16 37 H 0.08 0.13 7.18 -2.39 -0.02 0.11 16 38 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.42 1.99 7.01 -92.71 -0.65 1.34 16 41 H 0.11 2.29 7.57 -2.39 -0.02 2.27 16 42 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 45 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 Total: -1.00 -83.88 396.11 2.71 -81.17 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.31 Total: 12.10 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.98 Total: -1.33 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -4.34 Total: -85.97 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.10 Total: -42.51 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -83.88 2.71 -81.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688640760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.124 kcal (2) G-P(sol) polarization free energy of solvation -83.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds