Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00152 * 2 1 4 4 C 1.47199 * 109.47069 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.19010 * 359.97438 * 2 1 3 6 6 C 4.78776 * 168.18630 * 359.97438 * 2 1 3 7 7 N 1.46904 * 109.47213 * 14.87093 * 6 5 4 8 8 C 1.46902 * 110.99933 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.44719 * 324.96588 * 8 7 6 10 10 C 1.53106 * 109.50854 * 84.94319 * 8 7 6 11 11 C 1.53185 * 109.33343 * 181.36872 * 10 8 7 12 12 N 1.46927 * 108.77460 * 305.36941 * 11 10 8 13 13 C 1.34785 * 120.62942 * 233.63117 * 12 11 10 14 14 O 1.21284 * 119.99984 * 179.97438 * 13 12 11 15 15 C 1.50695 * 119.99838 * 359.97261 * 13 12 11 16 16 S 1.81000 * 109.47210 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00203 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99648 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00142 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47121 * 60.00338 * 21 19 17 23 23 H 1.48503 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47459 * 300.00501 * 21 19 17 25 25 C 1.46919 * 118.74315 * 53.60638 * 12 11 10 26 26 C 1.53039 * 109.45787 * 204.99936 * 8 7 6 27 27 H 1.09002 * 109.49756 * 298.56477 * 26 8 7 28 28 C 1.52998 * 109.49913 * 58.63230 * 26 8 7 29 29 H 1.09002 * 109.46876 * 300.00494 * 1 2 3 30 30 H 1.09001 * 109.46540 * 60.00013 * 1 2 3 31 31 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47567 * 59.99515 * 3 2 1 33 33 H 1.09007 * 109.46531 * 299.99949 * 3 2 1 34 34 H 1.08997 * 109.47103 * 254.87106 * 6 5 4 35 35 H 1.08997 * 109.46952 * 134.86850 * 6 5 4 36 36 H 1.00896 * 110.99535 * 303.94825 * 7 6 5 37 37 H 1.09008 * 109.48567 * 61.41028 * 10 8 7 38 38 H 1.08998 * 109.51592 * 301.34792 * 10 8 7 39 39 H 1.08996 * 109.59131 * 185.58096 * 11 10 8 40 40 H 1.09001 * 109.70543 * 65.21903 * 11 10 8 41 41 H 1.08998 * 109.47354 * 300.00452 * 15 13 12 42 42 H 1.09008 * 109.47300 * 60.00401 * 15 13 12 43 43 H 0.96996 * 120.00070 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.59116 * 186.60805 * 25 12 11 45 45 H 1.08996 * 109.58757 * 66.17680 * 25 12 11 46 46 H 1.09000 * 109.47337 * 179.97438 * 28 26 8 47 47 H 1.09003 * 109.46962 * 299.93201 * 28 26 8 48 48 H 1.08992 * 109.47809 * 59.93328 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1892 -0.0006 5 6 4.6481 1.0965 -0.0005 6 6 6.1154 0.9802 -0.0004 7 7 6.4979 -0.3929 -0.3559 8 6 7.9588 -0.5468 -0.3653 9 1 8.4185 0.3750 -0.7218 10 6 8.4505 -0.8461 1.0535 11 6 9.9772 -0.9719 1.0451 12 7 10.3631 -1.9794 0.0477 13 6 11.1548 -3.0155 0.3891 14 8 11.4659 -3.8409 -0.4433 15 6 11.6532 -3.1483 1.8050 16 16 12.6836 -4.6297 1.9456 17 6 13.1166 -4.5407 3.6512 18 1 12.7489 -3.7279 4.2599 19 6 13.9295 -5.5156 4.2126 20 7 14.3773 -6.5065 3.4708 21 14 14.3880 -5.4216 6.0210 22 1 13.1548 -5.4633 6.8472 23 1 15.2584 -6.5726 6.3715 24 1 15.1158 -4.1537 6.2820 25 6 9.8694 -1.8364 -1.3286 26 6 8.3439 -1.7009 -1.2936 27 1 7.9047 -2.6274 -0.9237 28 6 7.8240 -1.4169 -2.7043 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 6.4988 1.2189 0.9916 35 1 6.5349 1.6742 -0.7287 36 1 6.0683 -1.0605 0.2669 37 1 8.0103 -1.7807 1.4013 38 1 8.1559 -0.0352 1.7196 39 1 10.3237 -1.2821 2.0308 40 1 10.4236 -0.0118 0.7861 41 1 12.2422 -2.2694 2.0668 42 1 10.8037 -3.2315 2.4830 43 1 14.9456 -7.1876 3.8631 44 1 10.1448 -2.7170 -1.9090 45 1 10.3049 -0.9463 -1.7824 46 1 8.0989 -2.2389 -3.3652 47 1 6.7386 -1.3194 -2.6787 48 1 8.2633 -0.4904 -3.0738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698887570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -30.871068 kcal Electronic energy + Delta-G solvation = -26209.513301 eV Core-core repulsion = 22392.132149 eV Total energy + Delta-G solvation = -3817.381152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18226 -38.44511 -38.18942 -35.84703 -33.97012 -33.07090 -32.42669 -31.10025 -29.52710 -28.73777 -26.81339 -26.19085 -25.50927 -25.19537 -23.53100 -22.45213 -20.62023 -19.21388 -17.85826 -17.62012 -16.94275 -16.73379 -16.45373 -15.97493 -15.83304 -15.54300 -15.24702 -15.04964 -14.80312 -14.40216 -14.00396 -13.88398 -13.69748 -13.37815 -13.25124 -13.10535 -12.93192 -12.65470 -12.55619 -12.22766 -12.09689 -12.03314 -11.82412 -11.54746 -11.23860 -11.04234 -11.03824 -10.95038 -10.77926 -10.74358 -10.65463 -10.47996 -9.95545 -9.80811 -9.34611 -9.05758 -8.76680 -8.48553 -8.22108 -6.49638 -6.21062 -3.91788 1.93086 2.30656 2.94399 3.06549 3.23312 3.25873 3.29132 3.45197 3.59904 3.74458 4.17905 4.20515 4.39762 4.55799 4.65373 4.75154 4.79872 4.81619 4.84937 4.92352 4.99992 5.02588 5.09739 5.10693 5.13860 5.19372 5.29001 5.30012 5.35938 5.43147 5.51022 5.59265 5.65153 5.67644 5.83336 5.85712 5.90814 6.01788 6.11202 6.16962 6.25870 6.57000 6.61208 6.66914 6.96279 7.20311 7.56931 7.59633 8.35102 8.57969 9.23906 10.86282 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.001864 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.076222 B =15020.189124 C =16104.714754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.179 3.821 4 C -0.185 4.185 5 C -0.143 4.143 6 C 0.170 3.830 7 N -0.677 5.677 8 C 0.095 3.905 9 H 0.082 0.918 10 C -0.167 4.167 11 C 0.113 3.887 12 N -0.621 5.621 13 C 0.535 3.465 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.117 3.883 26 C -0.092 4.092 27 H 0.075 0.925 28 C -0.135 4.135 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.348 0.652 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.666 19.957 -7.648 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.104 3.896 4 C -0.186 4.186 5 C -0.144 4.144 6 C 0.042 3.958 7 N -0.307 5.307 8 C -0.015 4.015 9 H 0.100 0.900 10 C -0.207 4.207 11 C -0.011 4.011 12 N -0.357 5.357 13 C 0.323 3.677 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.006 4.006 26 C -0.112 4.112 27 H 0.094 0.906 28 C -0.193 4.193 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.010 18.497 -9.578 31.038 hybrid contribution -0.184 1.363 3.237 3.517 sum -23.194 19.860 -6.340 31.187 Atomic orbital electron populations 1.22806 0.80117 1.03382 1.00228 1.87994 1.20184 1.26749 1.95497 1.19035 0.83744 0.85530 1.01319 1.21641 0.92794 1.01881 1.02312 1.22177 0.93465 0.98227 1.00525 1.18883 0.84345 0.92126 1.00459 1.60568 1.08578 1.03744 1.57827 1.21654 0.86520 0.99283 0.94055 0.89954 1.22705 0.97021 1.02810 0.98180 1.21600 0.93948 0.92116 0.93435 1.48118 1.51061 1.26224 1.10294 1.20327 0.77287 0.79872 0.90219 1.90692 1.56195 1.40431 1.51713 1.23553 1.04286 1.07160 0.95120 1.85412 1.59655 1.24826 1.13475 1.22818 1.36625 1.13988 0.95021 0.91034 1.24984 0.95085 0.94503 0.98950 1.70005 1.32334 1.11804 1.36080 0.86235 0.78508 0.77837 0.82981 1.19956 1.20792 1.19954 1.21630 0.92495 1.02998 0.83466 1.21459 0.95062 0.98330 0.96352 0.90629 1.21632 1.02280 1.00803 0.94544 0.93721 0.93683 0.89111 0.90955 0.90875 0.92494 0.88537 0.83321 0.90804 0.90851 0.89138 0.91455 0.89331 0.89367 0.92123 0.88621 0.91874 0.93005 0.91047 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.43 10.66 -35.23 -0.38 -3.80 16 3 C 0.18 1.26 6.41 34.37 0.22 1.48 16 4 C -0.18 -1.77 13.73 -37.12 -0.51 -2.28 16 5 C -0.14 -1.34 13.60 -37.13 -0.50 -1.85 16 6 C 0.17 1.23 5.96 -6.61 -0.04 1.19 16 7 N -0.68 -5.56 5.40 -109.72 -0.59 -6.15 16 8 C 0.09 0.78 1.89 -67.64 -0.13 0.65 16 9 H 0.08 0.62 7.80 -51.93 -0.40 0.22 16 10 C -0.17 -1.43 5.34 -26.58 -0.14 -1.57 16 11 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 12 N -0.62 -8.73 2.97 -172.78 -0.51 -9.24 16 13 C 0.53 10.25 7.72 -10.98 -0.08 10.16 16 14 O -0.52 -11.92 15.28 5.55 0.08 -11.84 16 15 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.12 1.43 5.72 -3.71 -0.02 1.41 16 26 C -0.09 -0.93 2.59 -90.50 -0.23 -1.16 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 C -0.13 -1.23 9.03 37.16 0.34 -0.89 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.06 0.35 7.42 -51.93 -0.39 -0.03 16 35 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 36 H 0.35 3.02 8.46 -39.29 -0.33 2.68 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.07 0.51 7.43 -51.93 -0.39 0.12 16 39 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 42 H 0.09 1.67 7.69 -51.91 -0.40 1.27 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.10 1.38 7.00 -51.93 -0.36 1.01 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.69 7.57 -51.93 -0.39 0.29 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 408.79 15.07 6.16 6.16 Total: -1.00 -35.50 408.79 -9.40 -44.90 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.00 Total: -0.75 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.34 Total: -6.31 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.37 Total: -40.88 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.29 Total: -15.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.50 -9.40 -44.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.028 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds