Wall clock time and date at job start Sat Apr 11 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00152 * 2 1 4 4 C 1.47199 * 109.47069 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.19010 * 359.97438 * 2 1 3 6 6 C 4.78776 * 168.18630 * 359.97438 * 2 1 3 7 7 N 1.46904 * 109.47213 * 14.87093 * 6 5 4 8 8 C 1.46902 * 110.99933 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.44719 * 324.96588 * 8 7 6 10 10 C 1.53106 * 109.50854 * 84.94319 * 8 7 6 11 11 C 1.53185 * 109.33343 * 181.36872 * 10 8 7 12 12 N 1.46927 * 108.77460 * 305.36941 * 11 10 8 13 13 C 1.34785 * 120.62942 * 233.63117 * 12 11 10 14 14 O 1.21284 * 119.99984 * 179.97438 * 13 12 11 15 15 C 1.50695 * 119.99838 * 359.97261 * 13 12 11 16 16 S 1.81000 * 109.47210 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00203 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99648 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00142 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47121 * 60.00338 * 21 19 17 23 23 H 1.48503 * 109.46976 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47459 * 300.00501 * 21 19 17 25 25 C 1.46919 * 118.74315 * 53.60638 * 12 11 10 26 26 C 1.53039 * 109.45787 * 204.99936 * 8 7 6 27 27 H 1.09002 * 109.49756 * 298.56477 * 26 8 7 28 28 C 1.52998 * 109.49913 * 58.63230 * 26 8 7 29 29 H 1.09002 * 109.46876 * 300.00494 * 1 2 3 30 30 H 1.09001 * 109.46540 * 60.00013 * 1 2 3 31 31 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47567 * 59.99515 * 3 2 1 33 33 H 1.09007 * 109.46531 * 299.99949 * 3 2 1 34 34 H 1.08997 * 109.47103 * 254.87106 * 6 5 4 35 35 H 1.08997 * 109.46952 * 134.86850 * 6 5 4 36 36 H 1.00896 * 110.99535 * 303.94825 * 7 6 5 37 37 H 1.09008 * 109.48567 * 61.41028 * 10 8 7 38 38 H 1.08998 * 109.51592 * 301.34792 * 10 8 7 39 39 H 1.08996 * 109.59131 * 185.58096 * 11 10 8 40 40 H 1.09001 * 109.70543 * 65.21903 * 11 10 8 41 41 H 1.08998 * 109.47354 * 300.00452 * 15 13 12 42 42 H 1.09008 * 109.47300 * 60.00401 * 15 13 12 43 43 H 0.96996 * 120.00070 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.59116 * 186.60805 * 25 12 11 45 45 H 1.08996 * 109.58757 * 66.17680 * 25 12 11 46 46 H 1.09000 * 109.47337 * 179.97438 * 28 26 8 47 47 H 1.09003 * 109.46962 * 299.93201 * 28 26 8 48 48 H 1.08992 * 109.47809 * 59.93328 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4777 1.1892 -0.0006 5 6 4.6481 1.0965 -0.0005 6 6 6.1154 0.9802 -0.0004 7 7 6.4979 -0.3929 -0.3559 8 6 7.9588 -0.5468 -0.3653 9 1 8.4185 0.3750 -0.7218 10 6 8.4505 -0.8461 1.0535 11 6 9.9772 -0.9719 1.0451 12 7 10.3631 -1.9794 0.0477 13 6 11.1548 -3.0155 0.3891 14 8 11.4659 -3.8409 -0.4433 15 6 11.6532 -3.1483 1.8050 16 16 12.6836 -4.6297 1.9456 17 6 13.1166 -4.5407 3.6512 18 1 12.7489 -3.7279 4.2599 19 6 13.9295 -5.5156 4.2126 20 7 14.3773 -6.5065 3.4708 21 14 14.3880 -5.4216 6.0210 22 1 13.1548 -5.4633 6.8472 23 1 15.2584 -6.5726 6.3715 24 1 15.1158 -4.1537 6.2820 25 6 9.8694 -1.8364 -1.3286 26 6 8.3439 -1.7009 -1.2936 27 1 7.9047 -2.6274 -0.9237 28 6 7.8240 -1.4169 -2.7043 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 6.4988 1.2189 0.9916 35 1 6.5349 1.6742 -0.7287 36 1 6.0683 -1.0605 0.2669 37 1 8.0103 -1.7807 1.4013 38 1 8.1559 -0.0352 1.7196 39 1 10.3237 -1.2821 2.0308 40 1 10.4236 -0.0118 0.7861 41 1 12.2422 -2.2694 2.0668 42 1 10.8037 -3.2315 2.4830 43 1 14.9456 -7.1876 3.8631 44 1 10.1448 -2.7170 -1.9090 45 1 10.3049 -0.9463 -1.7824 46 1 8.0989 -2.2389 -3.3652 47 1 6.7386 -1.3194 -2.6787 48 1 8.2633 -0.4904 -3.0738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698887570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:29 Heat of formation + Delta-G solvation = -55.161788 kcal Electronic energy + Delta-G solvation = -26210.566626 eV Core-core repulsion = 22392.132149 eV Total energy + Delta-G solvation = -3818.434477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31433 -39.32388 -38.93053 -36.76584 -34.86984 -34.58712 -33.82797 -31.91884 -31.00246 -29.31069 -27.76495 -27.39762 -26.91408 -25.92770 -24.37718 -23.25549 -21.52963 -20.52602 -19.53093 -18.45224 -18.08328 -17.42657 -17.06433 -16.92834 -16.87871 -16.78448 -16.41051 -16.17420 -15.90834 -15.80981 -15.17743 -14.89319 -14.50959 -14.39576 -14.34768 -14.08948 -13.72692 -13.57913 -13.49044 -13.37698 -13.16814 -13.00200 -12.87145 -12.83510 -12.66232 -12.51440 -12.37593 -12.02399 -11.77291 -11.72826 -11.46410 -11.26653 -11.16484 -11.13110 -10.87554 -10.47695 -10.27085 -9.70921 -9.33292 -8.67956 -8.34473 -6.13311 1.25182 1.30312 1.43689 1.45563 1.55109 1.57313 1.66911 2.10754 2.27400 2.95323 2.99455 3.12795 3.25012 3.57874 3.61723 3.73421 3.91655 4.00939 4.07983 4.23688 4.24532 4.30000 4.37138 4.40616 4.43272 4.47415 4.50992 4.53096 4.60511 4.63386 4.72333 4.74934 4.76817 4.80884 4.83265 4.87571 4.98742 5.13978 5.20094 5.35911 5.40949 5.45164 5.62315 5.99596 6.13945 6.19186 6.27244 6.31987 6.56761 7.06310 7.14516 8.74532 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.001864 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.076222 B =15020.189124 C =16104.714754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.173 3.827 4 C -0.209 4.209 5 C -0.159 4.159 6 C 0.171 3.829 7 N -0.683 5.683 8 C 0.104 3.896 9 H 0.103 0.897 10 C -0.159 4.159 11 C 0.104 3.896 12 N -0.607 5.607 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.123 4.123 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.261 1.261 25 C 0.116 3.884 26 C -0.085 4.085 27 H 0.052 0.948 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.344 0.656 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.044 0.956 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.939 23.225 -6.293 34.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.098 3.902 4 C -0.210 4.210 5 C -0.160 4.160 6 C 0.044 3.956 7 N -0.313 5.313 8 C -0.006 4.006 9 H 0.121 0.879 10 C -0.199 4.199 11 C -0.019 4.019 12 N -0.340 5.340 13 C 0.319 3.681 14 O -0.447 6.447 15 C -0.274 4.274 16 S 0.073 5.927 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.007 4.007 26 C -0.105 4.105 27 H 0.070 0.930 28 C -0.185 4.185 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.334 21.828 -8.225 33.709 hybrid contribution 0.078 0.445 2.723 2.760 sum -24.256 22.273 -5.502 33.388 Atomic orbital electron populations 1.22986 0.78366 1.04073 1.01598 1.87931 1.22253 1.27993 1.95790 1.19285 0.82598 0.85241 1.03041 1.22439 0.94023 1.02007 1.02567 1.22777 0.94393 0.98209 1.00603 1.19019 0.83248 0.91534 1.01815 1.60507 1.08305 1.04388 1.58059 1.21550 0.86764 0.98985 0.93284 0.87933 1.22659 0.95182 1.03135 0.98925 1.21962 0.95601 0.92063 0.92232 1.48130 1.48923 1.25082 1.11904 1.20152 0.78057 0.80713 0.89192 1.90674 1.58617 1.42748 1.52655 1.23363 1.03518 1.03725 0.96754 1.85615 1.62148 1.30279 1.14612 1.23161 1.36822 1.14526 0.94947 0.89867 1.26136 0.94736 0.93824 1.04417 1.70180 1.33210 1.12811 1.38538 0.85005 0.78572 0.78299 0.76126 1.18660 1.20413 1.18540 1.21776 0.94074 1.02793 0.82034 1.21358 0.93147 0.98402 0.97603 0.92983 1.21562 1.02005 1.01271 0.93704 0.92318 0.92316 0.88857 0.89076 0.89140 0.90804 0.87099 0.83783 0.92401 0.88074 0.89465 0.88435 0.87326 0.87701 0.91995 0.91518 0.89277 0.93735 0.91372 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -7.15 10.66 -148.98 -1.59 -8.73 16 3 C 0.17 2.22 6.41 70.18 0.45 2.67 16 4 C -0.21 -3.77 13.73 31.12 0.43 -3.34 16 5 C -0.16 -2.72 13.60 31.12 0.42 -2.30 16 6 C 0.17 1.98 5.96 84.49 0.50 2.48 16 7 N -0.68 -9.61 5.40 -501.06 -2.71 -12.32 16 8 C 0.10 1.40 1.89 44.96 0.09 1.49 16 9 H 0.10 1.06 7.80 -2.38 -0.02 1.04 16 10 C -0.16 -2.22 5.34 30.69 0.16 -2.06 16 11 C 0.10 1.86 6.34 86.36 0.55 2.41 16 12 N -0.61 -16.30 2.97 -818.92 -2.43 -18.73 16 13 C 0.53 20.52 7.72 87.65 0.68 21.20 16 14 O -0.57 -27.42 15.28 -3.04 -0.05 -27.47 16 15 C -0.12 -4.97 4.50 71.23 0.32 -4.65 16 16 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 17 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.38 13.22 21.65 0.29 -56.10 16 21 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 25 C 0.12 2.70 5.72 86.37 0.49 3.20 16 26 C -0.09 -1.60 2.59 -10.72 -0.03 -1.63 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 C -0.13 -2.14 9.03 71.98 0.65 -1.49 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.07 0.62 7.42 -2.39 -0.02 0.60 16 35 H 0.11 0.98 8.05 -2.39 -0.02 0.96 16 36 H 0.34 5.43 8.46 -89.70 -0.76 4.67 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.10 0.93 7.43 -2.39 -0.02 0.92 16 39 H 0.09 1.66 5.93 -2.39 -0.01 1.64 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 3.95 7.94 -2.40 -0.02 3.93 16 42 H 0.10 3.88 7.69 -2.39 -0.02 3.86 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.07 1.98 7.00 -2.39 -0.02 1.97 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 1.22 7.57 -2.39 -0.02 1.20 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.11 408.79 1.64 -79.47 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.20 Total: 18.17 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 7.07 Total: -10.07 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.85 Total: -87.15 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.63 Total: -36.20 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -81.11 1.64 -79.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.304 kcal (2) G-P(sol) polarization free energy of solvation -81.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds