Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00109 * 2 1 4 4 C 1.47206 * 109.47263 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.19100 * 0.02562 * 2 1 3 6 6 C 4.78779 * 168.18712 * 0.02562 * 2 1 3 7 7 N 1.46901 * 109.47015 * 322.86907 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.46019 * 34.97748 * 8 7 6 10 10 C 1.53042 * 109.45926 * 275.00020 * 8 7 6 11 11 C 1.53197 * 109.30936 * 178.61276 * 10 8 7 12 12 N 1.46927 * 108.77426 * 54.63716 * 11 10 8 13 13 C 1.34783 * 120.62695 * 126.36581 * 12 11 10 14 14 O 1.21279 * 119.99296 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00152 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47026 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00061 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99672 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00305 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47019 * 89.99857 * 21 19 17 23 23 H 1.48502 * 109.47320 * 210.00091 * 21 19 17 24 24 H 1.48496 * 109.47250 * 330.00005 * 21 19 17 25 25 C 1.46921 * 118.73986 * 306.39264 * 12 11 10 26 26 C 1.53044 * 109.45808 * 154.93391 * 8 7 6 27 27 H 1.09003 * 109.49602 * 301.33844 * 26 8 7 28 28 C 1.53001 * 109.49642 * 61.43644 * 26 8 7 29 29 H 1.09000 * 109.46979 * 59.99708 * 1 2 3 30 30 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46870 * 300.00233 * 1 2 3 32 32 H 1.09004 * 109.47689 * 59.99922 * 3 2 1 33 33 H 1.09001 * 109.47098 * 299.99487 * 3 2 1 34 34 H 1.09002 * 109.47132 * 82.87190 * 6 5 4 35 35 H 1.09001 * 109.47213 * 202.87220 * 6 5 4 36 36 H 1.00898 * 110.99877 * 56.04782 * 7 6 5 37 37 H 1.09000 * 109.50023 * 298.56507 * 10 8 7 38 38 H 1.08996 * 109.49688 * 58.63258 * 10 8 7 39 39 H 1.08997 * 109.58408 * 174.42294 * 11 10 8 40 40 H 1.09000 * 109.59053 * 294.85211 * 11 10 8 41 41 H 1.09006 * 109.47279 * 299.99915 * 15 13 12 42 42 H 1.08998 * 109.47016 * 60.00249 * 15 13 12 43 43 H 0.97009 * 120.00049 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58775 * 173.39836 * 25 12 11 45 45 H 1.09000 * 109.58203 * 293.81884 * 25 12 11 46 46 H 1.08995 * 109.47354 * 59.99674 * 28 26 8 47 47 H 1.09003 * 109.46860 * 180.02562 * 28 26 8 48 48 H 1.09002 * 109.46830 * 299.99596 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4777 1.1892 -0.0006 5 6 4.6481 1.0964 0.0005 6 6 6.1154 0.9801 0.0004 7 7 6.5163 -0.1593 0.8365 8 6 7.9778 -0.3068 0.8596 9 1 8.4428 0.6785 0.8267 10 6 8.4270 -1.1235 -0.3543 11 6 9.9541 -1.2458 -0.3455 12 7 10.3764 -1.8031 0.9467 13 6 11.1635 -2.8960 0.9987 14 8 11.5057 -3.3462 2.0716 15 6 11.6192 -3.5578 -0.2761 16 16 12.6551 -4.9875 0.1232 17 6 13.0363 -5.5524 -1.5017 18 1 12.6457 -5.0281 -2.3613 19 6 13.8396 -6.6707 -1.6769 20 7 14.1240 -7.0930 -2.8907 21 14 14.5170 -7.5764 -0.1902 22 1 13.5608 -8.6350 0.2225 23 1 15.8207 -8.1957 -0.5396 24 1 14.7080 -6.6185 0.9283 25 6 9.9240 -1.1469 2.1809 26 6 8.3974 -1.0257 2.1439 27 1 8.0566 -0.4553 3.0080 28 6 7.7733 -2.4223 2.1745 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.4675 0.8243 -1.0193 35 1 6.5524 1.8953 0.3999 36 1 6.0722 -1.0101 0.5251 37 1 7.9822 -2.1176 -0.3088 38 1 8.1069 -0.6231 -1.2681 39 1 10.2722 -1.9080 -1.1506 40 1 10.4004 -0.2607 -0.4819 41 1 10.7499 -3.8863 -0.8459 42 1 12.1948 -2.8469 -0.8689 43 1 14.6857 -7.8744 -3.0133 44 1 10.2224 -1.7439 3.0426 45 1 10.3679 -0.1538 2.2504 46 1 8.1157 -2.9923 1.3109 47 1 8.0721 -2.9337 3.0896 48 1 6.6871 -2.3356 2.1453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698887572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = -27.298807 kcal Electronic energy + Delta-G solvation = -26456.742212 eV Core-core repulsion = 22639.515965 eV Total energy + Delta-G solvation = -3817.226247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.41855 -38.45888 -38.27857 -35.92821 -33.92033 -32.85091 -32.43840 -31.11653 -29.55900 -28.75956 -26.86345 -26.45078 -25.61536 -25.29250 -23.61220 -23.04012 -20.24137 -18.97054 -17.88691 -17.62171 -16.95081 -16.87746 -16.46418 -16.09523 -15.63952 -15.56928 -15.44629 -15.16869 -14.94553 -14.50393 -14.11925 -13.80713 -13.72257 -13.41250 -13.27189 -13.18322 -13.08595 -12.84760 -12.79096 -12.14612 -12.09857 -12.08576 -11.75666 -11.69950 -11.25325 -11.16893 -11.00629 -10.89668 -10.84478 -10.61142 -10.55036 -10.49058 -9.98413 -9.85447 -9.45061 -9.00295 -8.79134 -8.56119 -8.48371 -6.91713 -6.29004 -4.00641 1.94481 2.27688 2.72204 2.95127 3.20677 3.33594 3.44115 3.50972 3.59311 3.75139 4.14612 4.33095 4.40503 4.47784 4.64699 4.68472 4.75909 4.77919 4.83593 4.84457 4.92078 4.98829 5.04152 5.07577 5.10049 5.10606 5.18775 5.23472 5.28903 5.33528 5.42406 5.56828 5.61808 5.68812 5.74576 5.75435 5.88788 5.98357 5.98680 6.04645 6.29699 6.56139 6.57494 6.60882 6.94160 7.19666 7.48138 7.93931 8.40990 8.46171 9.17331 10.80159 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.001881 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.227568 B =14882.114967 C =15521.876533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.179 3.821 4 C -0.184 4.184 5 C -0.144 4.144 6 C 0.169 3.831 7 N -0.679 5.679 8 C 0.095 3.905 9 H 0.082 0.918 10 C -0.170 4.170 11 C 0.112 3.888 12 N -0.616 5.616 13 C 0.534 3.466 14 O -0.518 6.518 15 C -0.122 4.122 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.116 3.884 26 C -0.091 4.091 27 H 0.087 0.913 28 C -0.146 4.146 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.349 0.651 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.293 20.936 5.356 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.104 3.896 4 C -0.186 4.186 5 C -0.145 4.145 6 C 0.041 3.959 7 N -0.310 5.310 8 C -0.015 4.015 9 H 0.100 0.900 10 C -0.210 4.210 11 C -0.012 4.012 12 N -0.352 5.352 13 C 0.322 3.678 14 O -0.393 6.393 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.007 4.007 26 C -0.110 4.110 27 H 0.105 0.895 28 C -0.203 4.203 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.168 0.832 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.596 20.327 7.419 31.286 hybrid contribution -0.194 -0.086 -1.947 1.959 sum -22.790 20.241 5.472 30.968 Atomic orbital electron populations 1.22804 0.80098 1.03380 1.00248 1.87985 1.20211 1.26800 1.95503 1.19042 0.83726 0.85511 1.01361 1.21647 0.92807 1.02255 1.01871 1.22177 0.93443 0.98181 1.00657 1.18900 0.84349 0.96071 0.96594 1.60597 1.07557 1.07415 1.55387 1.21600 0.86686 0.98846 0.94376 0.89969 1.22735 0.97014 1.02168 0.99075 1.21632 0.93784 0.99759 0.86010 1.48035 1.51141 1.29295 1.06713 1.20263 0.77354 0.79127 0.91065 1.90686 1.55142 1.62620 1.30820 1.23310 1.03811 1.02215 0.97887 1.84802 1.62240 1.30778 1.13785 1.22309 1.37198 1.16905 0.90459 0.89445 1.24708 0.94603 0.95832 0.96139 1.69942 1.36338 1.24704 1.20706 0.86735 0.79324 0.81799 0.84001 1.19212 1.19945 1.15918 1.21627 0.93045 0.97638 0.88398 1.21466 0.94547 0.97368 0.97656 0.89459 1.21808 1.00400 0.95726 1.02355 0.93707 0.89118 0.93670 0.90815 0.90924 0.92390 0.88490 0.83200 0.90378 0.90863 0.89074 0.91302 0.88692 0.88600 0.91955 0.88585 0.91793 0.92491 0.92598 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.40 10.66 -35.23 -0.38 -3.78 16 3 C 0.18 1.26 6.41 34.37 0.22 1.48 16 4 C -0.18 -1.77 13.73 -37.12 -0.51 -2.28 16 5 C -0.14 -1.35 13.60 -37.13 -0.50 -1.86 16 6 C 0.17 1.22 5.96 -6.61 -0.04 1.18 16 7 N -0.68 -5.47 5.78 -109.76 -0.63 -6.11 16 8 C 0.09 0.74 2.13 -67.67 -0.14 0.59 16 9 H 0.08 0.58 7.80 -51.93 -0.40 0.17 16 10 C -0.17 -1.39 4.99 -26.61 -0.13 -1.52 16 11 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 12 N -0.62 -8.01 2.41 -172.77 -0.42 -8.42 16 13 C 0.53 9.55 7.72 -10.99 -0.08 9.47 16 14 O -0.52 -11.17 15.27 5.56 0.08 -11.09 16 15 C -0.12 -2.36 4.50 36.00 0.16 -2.20 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 18 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 21 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C 0.12 1.30 5.83 -3.71 -0.02 1.28 16 26 C -0.09 -0.84 2.91 -90.50 -0.26 -1.11 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 28 C -0.15 -1.57 8.46 37.16 0.31 -1.25 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.36 7.41 -51.93 -0.38 -0.03 16 35 H 0.10 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.35 3.00 7.74 -39.29 -0.30 2.69 16 37 H 0.08 0.74 6.34 -51.93 -0.33 0.41 16 38 H 0.07 0.50 7.42 -51.93 -0.39 0.11 16 39 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 42 H 0.10 1.74 7.94 -51.92 -0.41 1.32 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.10 1.28 7.00 -51.93 -0.36 0.92 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.70 5.97 -51.93 -0.31 0.39 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.58 7.25 -51.93 -0.38 0.21 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -35.02 400.63 -8.72 -43.73 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.78 Total: -0.28 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 0.30 Total: -5.85 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.28 Total: -40.30 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.29 Total: -14.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.02 -8.72 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.436 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds