Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00109 * 2 1 4 4 C 1.47206 * 109.47263 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.19100 * 0.02562 * 2 1 3 6 6 C 4.78779 * 168.18712 * 0.02562 * 2 1 3 7 7 N 1.46901 * 109.47015 * 322.86907 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.46019 * 34.97748 * 8 7 6 10 10 C 1.53042 * 109.45926 * 275.00020 * 8 7 6 11 11 C 1.53197 * 109.30936 * 178.61276 * 10 8 7 12 12 N 1.46927 * 108.77426 * 54.63716 * 11 10 8 13 13 C 1.34783 * 120.62695 * 126.36581 * 12 11 10 14 14 O 1.21279 * 119.99296 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00152 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47026 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00061 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99672 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00305 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47019 * 89.99857 * 21 19 17 23 23 H 1.48502 * 109.47320 * 210.00091 * 21 19 17 24 24 H 1.48496 * 109.47250 * 330.00005 * 21 19 17 25 25 C 1.46921 * 118.73986 * 306.39264 * 12 11 10 26 26 C 1.53044 * 109.45808 * 154.93391 * 8 7 6 27 27 H 1.09003 * 109.49602 * 301.33844 * 26 8 7 28 28 C 1.53001 * 109.49642 * 61.43644 * 26 8 7 29 29 H 1.09000 * 109.46979 * 59.99708 * 1 2 3 30 30 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46870 * 300.00233 * 1 2 3 32 32 H 1.09004 * 109.47689 * 59.99922 * 3 2 1 33 33 H 1.09001 * 109.47098 * 299.99487 * 3 2 1 34 34 H 1.09002 * 109.47132 * 82.87190 * 6 5 4 35 35 H 1.09001 * 109.47213 * 202.87220 * 6 5 4 36 36 H 1.00898 * 110.99877 * 56.04782 * 7 6 5 37 37 H 1.09000 * 109.50023 * 298.56507 * 10 8 7 38 38 H 1.08996 * 109.49688 * 58.63258 * 10 8 7 39 39 H 1.08997 * 109.58408 * 174.42294 * 11 10 8 40 40 H 1.09000 * 109.59053 * 294.85211 * 11 10 8 41 41 H 1.09006 * 109.47279 * 299.99915 * 15 13 12 42 42 H 1.08998 * 109.47016 * 60.00249 * 15 13 12 43 43 H 0.97009 * 120.00049 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58775 * 173.39836 * 25 12 11 45 45 H 1.09000 * 109.58203 * 293.81884 * 25 12 11 46 46 H 1.08995 * 109.47354 * 59.99674 * 28 26 8 47 47 H 1.09003 * 109.46860 * 180.02562 * 28 26 8 48 48 H 1.09002 * 109.46830 * 299.99596 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4777 1.1892 -0.0006 5 6 4.6481 1.0964 0.0005 6 6 6.1154 0.9801 0.0004 7 7 6.5163 -0.1593 0.8365 8 6 7.9778 -0.3068 0.8596 9 1 8.4428 0.6785 0.8267 10 6 8.4270 -1.1235 -0.3543 11 6 9.9541 -1.2458 -0.3455 12 7 10.3764 -1.8031 0.9467 13 6 11.1635 -2.8960 0.9987 14 8 11.5057 -3.3462 2.0716 15 6 11.6192 -3.5578 -0.2761 16 16 12.6551 -4.9875 0.1232 17 6 13.0363 -5.5524 -1.5017 18 1 12.6457 -5.0281 -2.3613 19 6 13.8396 -6.6707 -1.6769 20 7 14.1240 -7.0930 -2.8907 21 14 14.5170 -7.5764 -0.1902 22 1 13.5608 -8.6350 0.2225 23 1 15.8207 -8.1957 -0.5396 24 1 14.7080 -6.6185 0.9283 25 6 9.9240 -1.1469 2.1809 26 6 8.3974 -1.0257 2.1439 27 1 8.0566 -0.4553 3.0080 28 6 7.7733 -2.4223 2.1745 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.4675 0.8243 -1.0193 35 1 6.5524 1.8953 0.3999 36 1 6.0722 -1.0101 0.5251 37 1 7.9822 -2.1176 -0.3088 38 1 8.1069 -0.6231 -1.2681 39 1 10.2722 -1.9080 -1.1506 40 1 10.4004 -0.2607 -0.4819 41 1 10.7499 -3.8863 -0.8459 42 1 12.1948 -2.8469 -0.8689 43 1 14.6857 -7.8744 -3.0133 44 1 10.2224 -1.7439 3.0426 45 1 10.3679 -0.1538 2.2504 46 1 8.1157 -2.9923 1.3109 47 1 8.0721 -2.9337 3.0896 48 1 6.6871 -2.3356 2.1453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698887572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = -51.044273 kcal Electronic energy + Delta-G solvation = -26457.771893 eV Core-core repulsion = 22639.515965 eV Total energy + Delta-G solvation = -3818.255928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45920 -39.38342 -38.93639 -36.78468 -34.77843 -34.67116 -33.64028 -31.88361 -30.97058 -29.32173 -27.93200 -27.58166 -27.09771 -25.92435 -24.40981 -23.81916 -21.39010 -19.96311 -19.57025 -18.47000 -18.12553 -17.42903 -17.17264 -16.98553 -16.86286 -16.80078 -16.53786 -16.14012 -15.87734 -15.69248 -15.36851 -14.96866 -14.90318 -14.52199 -14.29912 -14.11849 -13.78796 -13.70990 -13.59899 -13.50438 -13.35837 -13.02867 -12.94280 -12.75778 -12.66089 -12.50338 -12.37285 -12.01170 -11.87039 -11.68019 -11.48483 -11.26161 -11.17826 -11.12738 -10.87439 -10.53496 -10.48885 -9.67728 -9.36045 -9.00634 -8.52219 -6.23061 0.97554 1.30579 1.32241 1.45793 1.53634 1.55472 1.64250 2.09765 2.24498 2.68164 2.86074 2.94133 3.15954 3.51831 3.57753 3.74090 3.88244 4.03260 4.07291 4.17727 4.23031 4.23968 4.36816 4.39302 4.39788 4.49563 4.51508 4.52495 4.59014 4.60506 4.73452 4.74598 4.77505 4.83607 4.85223 4.87461 4.92691 5.11918 5.17344 5.20334 5.41663 5.61897 5.70059 5.99418 6.10329 6.13522 6.26597 6.31410 6.56313 6.93118 7.11897 8.60041 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.001881 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.227568 B =14882.114967 C =15521.876533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.173 3.827 4 C -0.209 4.209 5 C -0.160 4.160 6 C 0.169 3.831 7 N -0.684 5.684 8 C 0.103 3.897 9 H 0.104 0.896 10 C -0.163 4.163 11 C 0.104 3.896 12 N -0.601 5.601 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.106 4.106 16 S -0.178 6.178 17 C -0.528 4.528 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.238 1.238 25 C 0.114 3.886 26 C -0.082 4.082 27 H 0.098 0.902 28 C -0.142 4.142 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.344 0.656 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.418 23.229 5.650 34.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.098 3.902 4 C -0.210 4.210 5 C -0.161 4.161 6 C 0.042 3.958 7 N -0.314 5.314 8 C -0.006 4.006 9 H 0.122 0.878 10 C -0.203 4.203 11 C -0.019 4.019 12 N -0.334 5.334 13 C 0.321 3.679 14 O -0.443 6.443 15 C -0.257 4.257 16 S 0.049 5.951 17 C -0.676 4.676 18 H 0.081 0.919 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.162 1.162 25 C -0.008 4.008 26 C -0.102 4.102 27 H 0.116 0.884 28 C -0.199 4.199 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.760 22.669 7.688 33.727 hybrid contribution -0.009 -0.654 -2.087 2.187 sum -23.770 22.014 5.602 32.879 Atomic orbital electron populations 1.22985 0.78360 1.04083 1.01600 1.87923 1.22262 1.27999 1.95792 1.19287 0.82583 0.85244 1.03052 1.22446 0.94039 1.02472 1.02061 1.22799 0.94398 0.98122 1.00765 1.19042 0.83217 0.96193 0.97327 1.60552 1.07452 1.07520 1.55925 1.21523 0.86762 0.99421 0.92919 0.87826 1.22689 0.95356 1.01809 1.00432 1.21948 0.95255 1.00750 0.83912 1.48032 1.49051 1.27441 1.08904 1.19960 0.78147 0.80236 0.89535 1.90671 1.57424 1.64359 1.31805 1.23277 1.03159 0.99872 0.99349 1.84736 1.64168 1.34264 1.11941 1.22443 1.36881 1.16866 0.91374 0.91934 1.25537 0.94964 0.96677 0.98680 1.70015 1.37292 1.25559 1.22487 0.85884 0.79364 0.80554 0.80675 1.18805 1.18224 1.16162 1.21796 0.94465 0.98045 0.86508 1.21406 0.92870 0.96626 0.99299 0.88352 1.21759 1.00952 0.96501 1.00685 0.92280 0.88834 0.92368 0.89183 0.89002 0.90957 0.86915 0.83722 0.91935 0.88572 0.89770 0.88362 0.87487 0.87054 0.91369 0.91063 0.89055 0.94176 0.94247 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -7.07 10.66 -148.98 -1.59 -8.66 16 3 C 0.17 2.22 6.41 70.18 0.45 2.67 16 4 C -0.21 -3.77 13.73 31.13 0.43 -3.34 16 5 C -0.16 -2.74 13.60 31.12 0.42 -2.32 16 6 C 0.17 1.94 5.96 84.50 0.50 2.44 16 7 N -0.68 -9.20 5.78 -501.16 -2.90 -12.09 16 8 C 0.10 1.26 2.13 44.94 0.10 1.36 16 9 H 0.10 0.92 7.80 -2.39 -0.02 0.90 16 10 C -0.16 -2.18 4.99 30.67 0.15 -2.03 16 11 C 0.10 1.75 6.34 86.36 0.55 2.30 16 12 N -0.60 -14.57 2.41 -818.92 -1.97 -16.54 16 13 C 0.53 18.81 7.72 87.65 0.68 19.49 16 14 O -0.56 -24.57 15.27 -3.03 -0.05 -24.61 16 15 C -0.11 -4.06 4.50 71.23 0.32 -3.74 16 16 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 17 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 18 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 19 C 0.05 2.77 5.50 84.86 0.47 3.23 16 20 N -0.92 -55.81 13.97 21.65 0.30 -55.51 16 21 Si 0.91 45.37 27.74 68.60 1.90 47.27 16 22 H -0.26 -12.80 7.11 99.48 0.71 -12.10 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 25 C 0.11 2.34 5.83 86.36 0.50 2.84 16 26 C -0.08 -1.35 2.91 -10.72 -0.03 -1.38 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 C -0.14 -2.96 8.46 71.98 0.61 -2.35 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.64 7.41 -2.39 -0.02 0.62 16 35 H 0.11 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.34 5.26 7.74 -89.70 -0.69 4.57 16 37 H 0.06 1.07 6.34 -2.39 -0.02 1.06 16 38 H 0.10 0.92 7.42 -2.39 -0.02 0.90 16 39 H 0.08 1.57 5.93 -2.39 -0.01 1.56 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.11 3.84 7.69 -2.39 -0.02 3.82 16 42 H 0.11 3.92 7.94 -2.40 -0.02 3.90 16 43 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 44 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.04 0.97 5.97 -2.39 -0.01 0.95 16 47 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.26 7.25 -2.39 -0.02 1.25 16 Total: -1.00 -77.68 400.63 1.96 -75.72 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.23 Total: 14.15 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 7.08 Total: -9.58 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -4.57 Total: -84.14 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.63 Total: -33.27 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -77.68 1.96 -75.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds