Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 N 1.46507 * 109.46925 * 179.97438 * 16 15 13 18 18 C 1.34772 * 120.00257 * 179.97438 * 17 16 15 19 19 O 1.21561 * 119.99712 * 0.02562 * 18 17 16 20 20 C 1.47776 * 119.99990 * 179.97438 * 18 17 16 21 21 C 1.40647 * 119.74858 * 0.02562 * 20 18 17 22 22 C 1.35719 * 120.84772 * 179.97438 * 21 20 18 23 23 C 1.40705 * 120.02071 * 0.04194 * 22 21 20 24 24 C 1.40484 * 121.05188 * 180.02562 * 23 22 21 25 25 C 1.36140 * 119.72244 * 179.97438 * 24 23 22 26 26 C 1.39363 * 121.01156 * 359.97438 * 25 24 23 27 27 C 1.36089 * 120.95257 * 0.02562 * 26 25 24 28 28 C 1.40654 * 119.66027 * 359.95424 * 27 26 25 29 29 C 1.38488 * 119.74198 * 179.72949 * 20 18 17 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 35 35 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 36 36 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 37 37 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 38 38 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 39 39 H 0.97002 * 119.99419 * 0.02562 * 17 16 15 40 40 H 1.08003 * 119.57528 * 359.97298 * 21 20 18 41 41 H 1.07999 * 119.99349 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.14118 * 359.96303 * 24 23 22 43 43 H 1.08007 * 119.49676 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.52087 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.16558 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.28148 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 7 3.1889 -0.4359 5.9552 18 6 3.3175 0.2365 7.1161 19 8 3.0279 1.4158 7.1707 20 6 3.8094 -0.4603 8.3229 21 6 4.1425 -1.8250 8.2537 22 6 4.5969 -2.4867 9.3481 23 6 4.7393 -1.8081 10.5724 24 6 5.2082 -2.4716 11.7185 25 6 5.3361 -1.7884 12.8890 26 6 5.0091 -0.4361 12.9706 27 6 4.5519 0.2403 11.8818 28 6 4.4070 -0.4320 10.6549 29 6 3.9449 0.2371 9.5116 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.7088 1.1611 -3.4845 34 1 2.2490 -1.6316 1.1527 35 1 1.9776 -1.5506 3.8326 36 1 3.6492 -1.1202 3.3980 37 1 3.3726 1.0773 4.5141 38 1 1.7011 0.6461 4.9483 39 1 3.4203 -1.3769 5.9114 40 1 4.0352 -2.3532 7.3178 41 1 4.8489 -3.5346 9.2793 42 1 5.4659 -3.5193 11.6712 43 1 5.6973 -2.3020 13.7678 44 1 5.1195 0.0823 13.9116 45 1 4.3018 1.2882 11.9595 46 1 3.6930 1.2863 9.5592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064345830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -40.386218 kcal Electronic energy + Delta-G solvation = -27016.598023 eV Core-core repulsion = 23063.360312 eV Total energy + Delta-G solvation = -3953.237711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94464 -39.66945 -38.87977 -36.58924 -35.42440 -34.70038 -33.14351 -32.43337 -31.61095 -30.33290 -29.64874 -28.64069 -25.32547 -25.12935 -23.63134 -23.27391 -22.30521 -21.07107 -20.89898 -19.45153 -18.43391 -17.70254 -17.16962 -16.97463 -16.09670 -15.88296 -15.80745 -15.19986 -15.18232 -14.95871 -14.75259 -14.32148 -14.11596 -13.92588 -13.86013 -13.67442 -13.54840 -13.15829 -12.82588 -12.42470 -12.36596 -11.85393 -11.78230 -11.66934 -11.64839 -11.37323 -11.27823 -11.09902 -10.96053 -10.73552 -10.42198 -10.34645 -10.24875 -10.14740 -9.24514 -9.10446 -9.06077 -9.02453 -8.56659 -8.34575 -7.94556 -6.13553 -4.23353 -0.02347 0.40319 1.55565 2.18168 2.91030 3.07347 3.24105 3.29604 3.30377 3.33581 3.73172 4.09245 4.13481 4.32067 4.34721 4.39471 4.51265 4.63376 4.75979 4.80582 4.85658 4.87723 4.97395 5.15111 5.18856 5.35069 5.35558 5.45406 5.59771 5.65981 5.68262 5.74393 5.90540 5.95120 6.04082 6.05698 6.11908 6.28182 6.36274 6.50005 6.81062 6.95152 7.13526 7.31542 7.43410 7.53268 7.67177 7.89570 8.04894 8.13669 8.62433 8.75406 9.08477 9.44154 10.92333 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.001546 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.878009 B =18102.809410 C =18691.185888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.552 6.552 15 C -0.155 4.155 16 C 0.135 3.865 17 N -0.725 5.725 18 C 0.555 3.445 19 O -0.532 6.532 20 C -0.132 4.132 21 C -0.090 4.090 22 C -0.111 4.111 23 C -0.035 4.035 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.094 4.094 28 C -0.063 4.063 29 C -0.034 4.034 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.398 0.602 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.131 0.869 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.877 -10.138 29.626 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.356 5.356 13 C 0.288 3.712 14 O -0.431 6.431 15 C -0.196 4.196 16 C 0.012 3.988 17 N -0.377 5.377 18 C 0.342 3.658 19 O -0.410 6.410 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.036 4.036 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.112 4.112 28 C -0.063 4.063 29 C -0.053 4.053 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.233 0.767 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.149 0.851 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.345 -8.295 29.473 31.734 hybrid contribution 0.530 -1.541 -0.984 1.904 sum 8.875 -9.836 28.488 31.418 Atomic orbital electron populations 1.22076 0.98432 0.99079 1.00964 1.18759 0.91070 0.94045 0.79981 0.93309 1.21172 1.32608 1.13272 0.90347 0.92141 1.24896 0.94793 0.94952 0.99069 1.69895 1.35693 1.22384 1.24023 0.86499 0.79147 0.79552 0.81821 1.21110 1.20188 1.20185 1.46519 1.64990 1.13532 1.10527 1.20110 0.79007 0.87511 0.84605 1.90701 1.51199 1.16046 1.85120 1.21845 1.03564 0.99784 0.94429 1.21107 1.01429 0.94552 0.81736 1.45948 1.67601 1.14120 1.10058 1.18213 0.78054 0.86550 0.82982 1.90813 1.49703 1.15437 1.85008 1.19902 1.04768 0.94460 0.94394 1.20899 0.97760 0.93146 0.99048 1.20923 1.00196 1.00059 0.91702 1.18225 0.98097 0.92911 0.94328 1.21069 0.99767 1.00002 0.92192 1.20948 0.98984 0.94609 0.98005 1.20896 0.99514 0.94702 0.98855 1.21148 0.98268 1.00069 0.91755 1.18072 1.00838 0.93244 0.94170 1.21539 0.93258 1.00249 0.90269 0.89137 0.95499 0.96618 0.92483 0.77903 0.88823 0.88750 0.90225 0.90267 0.76682 0.85438 0.84906 0.85307 0.85776 0.85696 0.85098 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.63 2.56 -69.09 -0.18 6.46 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.04 16 4 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.71 -14.12 5.07 -54.93 -0.28 -14.40 16 13 C 0.50 9.52 7.79 -10.98 -0.09 9.43 16 14 O -0.55 -12.99 15.65 5.56 0.09 -12.91 16 15 C -0.16 -1.93 5.81 -27.88 -0.16 -2.09 16 16 C 0.13 1.85 4.96 -4.04 -0.02 1.83 16 17 N -0.73 -7.84 5.50 -61.27 -0.34 -8.17 16 18 C 0.56 7.16 7.76 -12.36 -0.10 7.06 16 19 O -0.53 -9.05 16.30 5.31 0.09 -8.96 16 20 C -0.13 -1.36 5.87 -105.00 -0.62 -1.98 16 21 C -0.09 -0.69 9.44 -39.57 -0.37 -1.06 16 22 C -0.11 -0.77 9.73 -39.55 -0.38 -1.16 16 23 C -0.04 -0.29 5.75 -106.76 -0.61 -0.90 16 24 C -0.11 -0.71 9.76 -39.49 -0.39 -1.10 16 25 C -0.11 -0.62 9.95 -39.92 -0.40 -1.01 16 26 C -0.12 -0.74 9.95 -39.93 -0.40 -1.14 16 27 C -0.09 -0.69 9.77 -39.44 -0.39 -1.08 16 28 C -0.06 -0.57 5.74 -106.85 -0.61 -1.18 16 29 C -0.03 -0.34 9.34 -38.71 -0.36 -0.71 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.39 6.51 8.54 -40.82 -0.35 6.16 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.40 2.87 6.45 -40.82 -0.26 2.61 16 40 H 0.13 0.63 6.34 -52.48 -0.33 0.30 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.12 0.43 8.06 -52.48 -0.42 0.00 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.14 1.44 7.61 -52.49 -0.40 1.04 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -34.59 389.86 -10.32 -44.91 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.24 Total: 6.96 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -5.12 Total: -4.54 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.01 Total: -46.76 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.17 Total: -21.87 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.59 -10.32 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.526 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds