Wall clock time and date at job start Sat Apr 11 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47134 * 2 1 4 4 C 1.50703 * 109.46704 * 239.99925 * 2 1 3 5 5 H 1.07995 * 119.99886 * 275.00086 * 4 2 1 6 6 C 1.37881 * 119.99712 * 95.00723 * 4 2 1 7 7 N 1.31516 * 119.99596 * 184.91658 * 6 4 2 8 8 Si 1.86803 * 120.00357 * 4.90873 * 6 4 2 9 9 H 1.48501 * 109.46823 * 84.83440 * 8 6 4 10 10 H 1.48496 * 109.47236 * 204.83649 * 8 6 4 11 11 H 1.48500 * 109.46861 * 324.83751 * 8 6 4 12 12 N 1.46499 * 109.47291 * 119.99808 * 2 1 3 13 13 C 1.34769 * 120.00198 * 274.99867 * 12 2 1 14 14 O 1.21277 * 120.00123 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99866 * 179.97438 * 13 12 2 16 16 N 1.46502 * 109.46885 * 180.02562 * 15 13 12 17 17 C 1.34782 * 119.99953 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00080 * 180.26877 * 17 16 15 20 20 C 1.50701 * 109.47235 * 179.72180 * 19 17 16 21 21 C 1.36124 * 120.17646 * 264.72861 * 20 19 17 22 22 C 1.39338 * 120.99050 * 179.77108 * 21 20 19 23 23 C 1.36118 * 120.98463 * 0.48471 * 22 21 20 24 24 C 1.40505 * 119.65714 * 359.77660 * 23 22 21 25 25 C 1.40544 * 121.27975 * 180.02562 * 24 23 22 26 26 C 1.36091 * 119.64975 * 179.97438 * 25 24 23 27 27 C 1.39386 * 120.99103 * 0.02562 * 26 25 24 28 28 C 1.36091 * 120.99557 * 359.95523 * 27 26 25 29 29 C 1.40505 * 120.16622 * 85.00437 * 20 19 17 30 30 H 1.08999 * 109.47264 * 55.03256 * 1 2 3 31 31 H 1.08993 * 109.47250 * 175.03962 * 1 2 3 32 32 H 1.09007 * 109.46652 * 295.03667 * 1 2 3 33 33 H 0.97001 * 119.99662 * 180.02562 * 7 6 4 34 34 H 0.97005 * 119.99601 * 94.99616 * 12 2 1 35 35 H 1.08996 * 109.47214 * 60.00102 * 15 13 12 36 36 H 1.09000 * 109.47214 * 300.00109 * 15 13 12 37 37 H 0.97001 * 120.00291 * 359.97438 * 16 15 13 38 38 H 1.08992 * 109.47566 * 299.72828 * 19 17 16 39 39 H 1.09004 * 109.46622 * 59.72637 * 19 17 16 40 40 H 1.08002 * 119.50201 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.50066 * 180.23920 * 22 21 20 42 42 H 1.08009 * 120.17092 * 179.75565 * 23 22 21 43 43 H 1.08002 * 120.17826 * 359.95215 * 25 24 23 44 44 H 1.08000 * 119.50350 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.50039 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.16865 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7058 -0.6132 -3.4623 8 14 2.3136 1.8791 -2.3175 9 1 3.5992 2.3948 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6490 -0.7288 3.5876 16 7 2.6979 0.2125 4.7092 17 6 3.1193 -0.2033 5.9200 18 8 3.4586 -1.3566 6.0810 19 6 3.1639 0.7634 7.0752 20 6 3.6610 0.0516 8.3070 21 6 2.7759 -0.4642 9.2033 22 6 3.2168 -1.1296 10.3454 23 6 4.5455 -1.2745 10.6029 24 6 5.4892 -0.7507 9.7034 25 6 6.8692 -0.8812 9.9353 26 6 7.7542 -0.3615 9.0416 27 6 7.3132 0.3005 7.8970 28 6 5.9849 0.4458 7.6393 29 6 5.0407 -0.0779 8.5391 30 1 -0.3634 0.5890 -0.8421 31 1 -0.3633 -1.0237 -0.0889 32 1 -0.3633 0.4349 0.9312 33 1 2.9370 -0.1048 -4.2554 34 1 2.2490 -1.6318 1.1526 35 1 3.6481 -1.1214 3.3985 36 1 1.9761 -1.5506 3.8325 37 1 2.4276 1.1351 4.5802 38 1 3.8368 1.5864 6.8346 39 1 2.1634 1.1544 7.2605 40 1 1.7159 -0.3597 9.0245 41 1 2.4934 -1.5329 11.0386 42 1 4.8727 -1.7893 11.4943 43 1 7.2256 -1.3910 10.8182 44 1 8.8142 -0.4629 9.2223 45 1 8.0366 0.7041 7.2041 46 1 5.6580 0.9608 6.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064345985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:35 Heat of formation + Delta-G solvation = -38.217750 kcal Electronic energy + Delta-G solvation = -27908.010262 eV Core-core repulsion = 23954.866583 eV Total energy + Delta-G solvation = -3953.143679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.89256 -39.79891 -38.81032 -36.73595 -35.23315 -34.24364 -33.98610 -32.47274 -30.72237 -30.49189 -30.13730 -28.41613 -26.48707 -25.36383 -23.54847 -23.18922 -21.78449 -20.98174 -20.31436 -19.73190 -18.01148 -17.75987 -17.24422 -16.89787 -16.54690 -16.18919 -15.76555 -15.57675 -15.15940 -14.91368 -14.43460 -14.30079 -14.19038 -13.74485 -13.69518 -13.52607 -13.34937 -12.97703 -12.85162 -12.69800 -12.56054 -12.41053 -12.11157 -12.01058 -11.52423 -11.51618 -11.18414 -11.14552 -10.98449 -10.89517 -10.67353 -10.20527 -9.95049 -9.88091 -9.41177 -9.28786 -9.16683 -8.78867 -8.77376 -8.25242 -8.05461 -6.29600 -4.34067 0.31130 0.83966 1.82330 2.54765 2.75127 3.03522 3.06113 3.21692 3.29063 3.34808 3.88110 3.97477 4.22533 4.26148 4.51065 4.58135 4.67891 4.76568 4.82776 4.92617 4.97795 5.03287 5.13419 5.16549 5.26573 5.27874 5.28899 5.44373 5.48092 5.55174 5.74954 5.89968 6.00345 6.03751 6.22389 6.23358 6.29147 6.33211 6.42717 6.43328 6.59219 6.61580 6.80897 6.82985 7.08648 7.25847 7.41985 7.47070 7.99543 8.15365 8.44118 8.68224 8.77398 9.31396 10.81988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002064 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.418948 B =13565.434377 C =14235.412828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.696 5.696 13 C 0.496 3.504 14 O -0.560 6.560 15 C 0.097 3.903 16 N -0.716 5.716 17 C 0.514 3.486 18 O -0.532 6.532 19 C -0.106 4.106 20 C -0.049 4.049 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.051 4.051 25 C -0.108 4.108 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.103 4.103 29 C -0.034 4.034 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.269 0.731 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.412 0.588 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 1.685 27.866 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.124 4.124 7 N -0.522 5.522 8 Si 0.702 3.298 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.344 5.344 13 C 0.280 3.720 14 O -0.440 6.440 15 C -0.030 4.030 16 N -0.371 5.371 17 C 0.300 3.700 18 O -0.408 6.408 19 C -0.145 4.145 20 C -0.049 4.049 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.051 4.051 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.034 4.034 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.231 0.769 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.250 0.750 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.593 1.703 27.744 28.173 hybrid contribution 0.013 0.810 -0.394 0.901 sum 4.606 2.513 27.350 27.848 Atomic orbital electron populations 1.22219 0.98397 1.00720 0.99297 1.19181 0.91037 0.94340 0.82588 0.93107 1.20999 1.45468 0.95702 0.94875 0.90208 1.24958 0.93565 0.98704 0.95155 1.69880 1.44393 1.36265 1.01702 0.86877 0.79732 0.85741 0.77445 1.19849 1.21121 1.18508 1.46629 1.64069 1.14125 1.09576 1.20433 0.78796 0.87645 0.85103 1.90628 1.52280 1.16068 1.85038 1.21147 1.03469 0.92794 0.85589 1.45733 1.67525 1.15082 1.08772 1.20427 0.77220 0.89070 0.83301 1.90744 1.47414 1.18940 1.83689 1.20686 1.04401 0.98127 0.91308 1.19078 0.92340 0.98737 0.94774 1.20699 0.99496 0.97821 0.94357 1.20789 0.95892 0.98998 0.97367 1.20999 0.92996 0.99795 0.98888 1.18048 0.93776 0.98612 0.94681 1.21004 0.91923 0.99984 0.99676 1.20852 0.99766 0.98306 0.94613 1.20864 0.95872 0.99270 0.97474 1.21043 0.93075 0.99452 0.98491 1.17844 0.92817 0.98191 0.94547 0.92795 0.93297 0.95236 0.92146 0.76928 0.88644 0.88762 0.75043 0.87582 0.87437 0.85969 0.85902 0.85677 0.85675 0.86042 0.85954 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.47 37.16 0.35 -2.75 16 2 C 0.23 5.26 2.22 -69.08 -0.15 5.11 16 3 H 0.05 1.26 4.73 -51.93 -0.25 1.02 16 4 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 5 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 8 Si 0.88 21.01 26.99 -169.99 -4.59 16.42 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -6.13 6.82 56.52 0.39 -5.74 16 12 N -0.70 -13.14 5.07 -54.93 -0.28 -13.42 16 13 C 0.50 8.69 7.86 -10.99 -0.09 8.61 16 14 O -0.56 -11.38 15.33 5.56 0.09 -11.30 16 15 C 0.10 1.35 6.15 -5.19 -0.03 1.32 16 16 N -0.72 -9.06 5.53 -61.47 -0.34 -9.40 16 17 C 0.51 6.49 7.82 -10.98 -0.09 6.41 16 18 O -0.53 -8.65 16.03 5.55 0.09 -8.56 16 19 C -0.11 -0.98 5.23 -29.04 -0.15 -1.13 16 20 C -0.05 -0.53 4.38 -104.53 -0.46 -0.99 16 21 C -0.11 -1.04 9.57 -39.93 -0.38 -1.42 16 22 C -0.11 -1.01 9.95 -39.93 -0.40 -1.40 16 23 C -0.11 -1.00 9.77 -39.49 -0.39 -1.39 16 24 C -0.05 -0.55 5.74 -106.83 -0.61 -1.17 16 25 C -0.11 -0.99 9.77 -39.48 -0.39 -1.37 16 26 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 27 C -0.12 -1.13 9.95 -39.93 -0.40 -1.52 16 28 C -0.10 -1.11 9.28 -39.48 -0.37 -1.48 16 29 C -0.03 -0.39 5.74 -106.83 -0.61 -1.01 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.40 6.59 8.59 -40.82 -0.35 6.24 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.41 4.94 7.44 -40.82 -0.30 4.64 16 38 H 0.11 0.80 6.70 -51.93 -0.35 0.45 16 39 H 0.11 0.74 8.04 -51.93 -0.42 0.32 16 40 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 41 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.12 1.21 6.49 -52.49 -0.34 0.87 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -33.69 388.71 -9.59 -43.28 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.23 Total: 9.71 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -4.96 Total: -7.72 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.16 Total: -47.69 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.59 Total: 16.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.69 -9.59 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.067 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds