Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47134 * 2 1 4 4 C 1.50703 * 109.46704 * 239.99925 * 2 1 3 5 5 H 1.07995 * 119.99886 * 275.00086 * 4 2 1 6 6 C 1.37881 * 119.99712 * 95.00723 * 4 2 1 7 7 N 1.31516 * 119.99596 * 184.91658 * 6 4 2 8 8 Si 1.86803 * 120.00357 * 4.90873 * 6 4 2 9 9 H 1.48501 * 109.46823 * 84.83440 * 8 6 4 10 10 H 1.48496 * 109.47236 * 204.83649 * 8 6 4 11 11 H 1.48500 * 109.46861 * 324.83751 * 8 6 4 12 12 N 1.46499 * 109.47291 * 119.99808 * 2 1 3 13 13 C 1.34769 * 120.00198 * 274.99867 * 12 2 1 14 14 O 1.21277 * 120.00123 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99866 * 179.97438 * 13 12 2 16 16 N 1.46502 * 109.46885 * 180.02562 * 15 13 12 17 17 C 1.34782 * 119.99953 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99903 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00080 * 180.26877 * 17 16 15 20 20 C 1.50701 * 109.47235 * 179.72180 * 19 17 16 21 21 C 1.36124 * 120.17646 * 264.72861 * 20 19 17 22 22 C 1.39338 * 120.99050 * 179.77108 * 21 20 19 23 23 C 1.36118 * 120.98463 * 0.48471 * 22 21 20 24 24 C 1.40505 * 119.65714 * 359.77660 * 23 22 21 25 25 C 1.40544 * 121.27975 * 180.02562 * 24 23 22 26 26 C 1.36091 * 119.64975 * 179.97438 * 25 24 23 27 27 C 1.39386 * 120.99103 * 0.02562 * 26 25 24 28 28 C 1.36091 * 120.99557 * 359.95523 * 27 26 25 29 29 C 1.40505 * 120.16622 * 85.00437 * 20 19 17 30 30 H 1.08999 * 109.47264 * 55.03256 * 1 2 3 31 31 H 1.08993 * 109.47250 * 175.03962 * 1 2 3 32 32 H 1.09007 * 109.46652 * 295.03667 * 1 2 3 33 33 H 0.97001 * 119.99662 * 180.02562 * 7 6 4 34 34 H 0.97005 * 119.99601 * 94.99616 * 12 2 1 35 35 H 1.08996 * 109.47214 * 60.00102 * 15 13 12 36 36 H 1.09000 * 109.47214 * 300.00109 * 15 13 12 37 37 H 0.97001 * 120.00291 * 359.97438 * 16 15 13 38 38 H 1.08992 * 109.47566 * 299.72828 * 19 17 16 39 39 H 1.09004 * 109.46622 * 59.72637 * 19 17 16 40 40 H 1.08002 * 119.50201 * 0.02562 * 21 20 19 41 41 H 1.08003 * 119.50066 * 180.23920 * 22 21 20 42 42 H 1.08009 * 120.17092 * 179.75565 * 23 22 21 43 43 H 1.08002 * 120.17826 * 359.95215 * 25 24 23 44 44 H 1.08000 * 119.50350 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.50039 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.16865 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7058 -0.6132 -3.4623 8 14 2.3136 1.8791 -2.3175 9 1 3.5992 2.3948 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1472 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6490 -0.7288 3.5876 16 7 2.6979 0.2125 4.7092 17 6 3.1193 -0.2033 5.9200 18 8 3.4586 -1.3566 6.0810 19 6 3.1639 0.7634 7.0752 20 6 3.6610 0.0516 8.3070 21 6 2.7759 -0.4642 9.2033 22 6 3.2168 -1.1296 10.3454 23 6 4.5455 -1.2745 10.6029 24 6 5.4892 -0.7507 9.7034 25 6 6.8692 -0.8812 9.9353 26 6 7.7542 -0.3615 9.0416 27 6 7.3132 0.3005 7.8970 28 6 5.9849 0.4458 7.6393 29 6 5.0407 -0.0779 8.5391 30 1 -0.3634 0.5890 -0.8421 31 1 -0.3633 -1.0237 -0.0889 32 1 -0.3633 0.4349 0.9312 33 1 2.9370 -0.1048 -4.2554 34 1 2.2490 -1.6318 1.1526 35 1 3.6481 -1.1214 3.3985 36 1 1.9761 -1.5506 3.8325 37 1 2.4276 1.1351 4.5802 38 1 3.8368 1.5864 6.8346 39 1 2.1634 1.1544 7.2605 40 1 1.7159 -0.3597 9.0245 41 1 2.4934 -1.5329 11.0386 42 1 4.8727 -1.7893 11.4943 43 1 7.2256 -1.3910 10.8182 44 1 8.8142 -0.4629 9.2223 45 1 8.0366 0.7041 7.2041 46 1 5.6580 0.9608 6.7482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064345985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = -59.914261 kcal Electronic energy + Delta-G solvation = -27908.951093 eV Core-core repulsion = 23954.866583 eV Total energy + Delta-G solvation = -3954.084511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.67192 -40.98283 -40.04788 -37.41855 -36.87906 -35.43100 -34.72877 -34.41987 -32.04503 -31.24015 -31.14047 -29.38362 -27.52528 -27.29589 -24.24252 -23.87381 -23.07763 -22.18508 -21.40891 -21.15857 -19.49710 -18.43487 -18.40531 -17.99044 -17.60963 -17.20973 -17.02990 -16.83468 -16.57740 -15.88477 -15.74019 -15.25571 -15.11638 -14.99656 -14.58989 -14.49893 -14.35895 -14.25473 -14.19967 -14.03278 -13.83327 -13.54163 -13.19112 -13.04203 -12.80823 -12.79295 -12.74698 -12.45812 -12.20706 -11.88370 -11.79824 -11.65101 -11.25360 -11.14703 -10.96420 -10.82814 -10.68874 -10.24905 -9.87317 -9.49322 -8.74871 -8.39542 -6.46581 -0.38291 0.13283 1.09923 1.29929 1.34623 1.44230 1.55623 1.64065 1.88354 2.15280 2.26581 2.58330 3.02314 3.21007 3.52747 3.74252 3.85747 3.90077 4.01707 4.05064 4.14633 4.28548 4.34030 4.37491 4.39766 4.45142 4.48295 4.50371 4.63078 4.67282 4.72650 4.81992 4.89689 5.06544 5.06767 5.23277 5.25010 5.33408 5.35482 5.37643 5.44647 5.53654 5.64322 5.67773 5.72680 5.94722 6.08867 6.14495 6.47097 6.59032 6.78570 7.16955 7.17991 7.32230 8.75393 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002064 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.418948 B =13565.434377 C =14235.412828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.234 3.766 3 H 0.035 0.965 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.930 5.930 8 Si 0.930 3.070 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.252 1.252 12 N -0.698 5.698 13 C 0.501 3.499 14 O -0.585 6.585 15 C 0.108 3.892 16 N -0.713 5.713 17 C 0.518 3.482 18 O -0.570 6.570 19 C -0.099 4.099 20 C -0.070 4.070 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.076 4.076 25 C -0.113 4.113 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.057 4.057 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.417 0.583 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.137 0.863 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 2.301 30.149 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.130 3.870 3 H 0.053 0.947 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.170 4.170 7 N -0.569 5.569 8 Si 0.754 3.246 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.176 1.176 12 N -0.347 5.347 13 C 0.288 3.712 14 O -0.466 6.466 15 C -0.019 4.019 16 N -0.368 5.368 17 C 0.306 3.694 18 O -0.449 6.449 19 C -0.138 4.138 20 C -0.071 4.071 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.076 4.076 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.143 4.143 29 C -0.057 4.057 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.244 0.756 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.255 0.745 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.155 0.845 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.389 2.323 30.052 30.459 hybrid contribution 0.097 0.537 -1.016 1.154 sum 4.486 2.860 29.035 29.519 Atomic orbital electron populations 1.22112 0.96867 1.01325 0.99714 1.18927 0.92113 0.93216 0.82696 0.94730 1.21199 1.44446 0.94825 0.96168 0.92596 1.25668 0.93724 1.02688 0.94963 1.69988 1.46502 1.37876 1.02516 0.86008 0.79793 0.81049 0.77717 1.19888 1.20509 1.17626 1.46343 1.64552 1.14682 1.09137 1.20876 0.77721 0.87224 0.85428 1.90617 1.53184 1.17318 1.85513 1.21017 1.03886 0.92828 0.84176 1.45747 1.67479 1.15077 1.08539 1.20948 0.75861 0.88996 0.83610 1.90727 1.49139 1.20789 1.84234 1.20722 1.06296 0.97436 0.89358 1.19291 0.92400 0.99758 0.95640 1.21036 1.00306 0.97380 0.94476 1.21139 0.96481 0.98739 0.97588 1.21342 0.93022 0.99453 0.99370 1.18429 0.94984 0.99171 0.95060 1.21351 0.91451 0.99721 1.00515 1.21181 1.01106 0.97895 0.94227 1.21170 0.95875 0.99074 0.98116 1.21201 0.93727 1.00472 0.98917 1.18146 0.93501 0.98845 0.95232 0.93319 0.92471 0.93998 0.92023 0.75639 0.87993 0.87269 0.74479 0.86027 0.84794 0.84383 0.83484 0.83317 0.83289 0.83654 0.84493 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.47 71.98 0.68 -5.06 16 2 C 0.23 10.47 2.22 44.25 0.10 10.57 16 3 H 0.03 1.68 4.73 -2.39 -0.01 1.67 16 4 C -0.53 -27.69 9.05 25.60 0.23 -27.46 16 5 H 0.06 3.14 8.06 -2.91 -0.02 3.12 16 6 C 0.03 1.65 5.47 84.66 0.46 2.12 16 7 N -0.93 -54.67 13.96 21.45 0.30 -54.37 16 8 Si 0.93 43.21 26.99 68.60 1.85 45.06 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.25 -11.28 6.82 99.48 0.68 -10.60 16 12 N -0.70 -25.57 5.07 -446.10 -2.26 -27.83 16 13 C 0.50 16.80 7.86 87.66 0.69 17.48 16 14 O -0.58 -22.84 15.33 -3.02 -0.05 -22.89 16 15 C 0.11 2.82 6.15 85.63 0.53 3.34 16 16 N -0.71 -16.85 5.53 -466.78 -2.58 -19.43 16 17 C 0.52 12.41 7.82 87.66 0.69 13.09 16 18 O -0.57 -18.13 16.03 -3.04 -0.05 -18.18 16 19 C -0.10 -1.69 5.23 29.10 0.15 -1.54 16 20 C -0.07 -1.46 4.38 -19.80 -0.09 -1.55 16 21 C -0.11 -2.08 9.57 22.04 0.21 -1.87 16 22 C -0.12 -1.98 9.95 22.04 0.22 -1.76 16 23 C -0.11 -1.93 9.77 22.33 0.22 -1.71 16 24 C -0.08 -1.59 5.74 -21.30 -0.12 -1.71 16 25 C -0.11 -1.91 9.77 22.33 0.22 -1.70 16 26 C -0.13 -2.07 9.95 22.05 0.22 -1.86 16 27 C -0.12 -2.32 9.95 22.05 0.22 -2.10 16 28 C -0.13 -2.70 9.28 22.33 0.21 -2.49 16 29 C -0.06 -1.31 5.74 -21.30 -0.12 -1.43 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.41 13.17 8.59 -92.70 -0.80 12.38 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.42 9.24 7.44 -92.71 -0.69 8.55 16 38 H 0.12 1.67 6.70 -2.39 -0.02 1.65 16 39 H 0.13 1.52 8.04 -2.39 -0.02 1.50 16 40 H 0.14 1.92 8.04 -2.91 -0.02 1.90 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.13 2.45 6.49 -2.91 -0.02 2.43 16 Total: -1.00 -72.68 388.71 1.43 -71.25 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.49 Total: 32.02 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.71 Total: -5.62 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.54 Total: -101.63 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.10 Total: -41.07 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.85 Total: 45.06 kcal Total: -72.68 1.43 -71.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064345985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.334 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds