Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47385 * 2 1 4 4 N 1.46493 * 109.47664 * 239.99750 * 2 1 3 5 5 S 1.65599 * 119.99969 * 94.65308 * 4 2 1 6 6 O 1.42102 * 106.40230 * 176.73929 * 5 4 2 7 7 O 1.42098 * 106.40782 * 309.66151 * 5 4 2 8 8 N 1.65602 * 107.21821 * 63.20421 * 5 4 2 9 9 C 1.46494 * 120.00132 * 82.87381 * 8 5 4 10 10 C 1.46498 * 119.99636 * 262.88091 * 8 5 4 11 11 C 1.50703 * 109.47277 * 114.30810 * 10 8 5 12 12 H 1.08002 * 119.99898 * 2.77292 * 11 10 8 13 13 C 1.37874 * 120.00111 * 182.77686 * 11 10 8 14 14 N 1.31517 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47445 * 89.99834 * 15 13 11 17 17 H 1.48500 * 109.47112 * 209.99792 * 15 13 11 18 18 H 1.48497 * 109.47076 * 329.99812 * 15 13 11 19 19 C 1.53002 * 109.46969 * 119.99860 * 2 1 3 20 20 C 1.53002 * 109.47394 * 172.94772 * 19 2 1 21 21 C 1.52991 * 109.47099 * 52.94799 * 19 2 1 22 22 C 1.50704 * 109.47300 * 292.94786 * 19 2 1 23 23 C 1.38225 * 120.00165 * 170.34604 * 22 19 2 24 24 C 1.38240 * 120.00201 * 180.02562 * 23 22 19 25 25 C 1.38237 * 119.99718 * 359.95093 * 24 23 22 26 26 C 1.38233 * 119.99736 * 0.27573 * 25 24 23 27 27 C 1.38229 * 120.00426 * 359.51779 * 26 25 24 28 28 H 1.09007 * 109.46886 * 58.42209 * 1 2 3 29 29 H 1.08993 * 109.46967 * 178.41695 * 1 2 3 30 30 H 1.09002 * 109.47297 * 298.42061 * 1 2 3 31 31 H 0.97003 * 120.00132 * 274.66407 * 4 2 1 32 32 H 1.09008 * 109.46656 * 90.00684 * 9 8 5 33 33 H 1.08999 * 109.47383 * 210.00168 * 9 8 5 34 34 H 1.09001 * 109.47752 * 330.00804 * 9 8 5 35 35 H 1.09007 * 109.47049 * 234.30250 * 10 8 5 36 36 H 1.08997 * 109.47679 * 354.30854 * 10 8 5 37 37 H 0.97003 * 120.00191 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47363 * 185.97354 * 20 19 2 39 39 H 1.09001 * 109.47072 * 305.98075 * 20 19 2 40 40 H 1.09000 * 109.47040 * 65.96803 * 20 19 2 41 41 H 1.09004 * 109.47361 * 300.00132 * 21 19 2 42 42 H 1.08996 * 109.47459 * 60.00038 * 21 19 2 43 43 H 1.08999 * 109.47625 * 180.02562 * 21 19 2 44 44 H 1.08002 * 120.00017 * 359.97199 * 23 22 19 45 45 H 1.07999 * 120.00040 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.00004 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.99806 * 179.72256 * 26 25 24 48 48 H 1.08004 * 120.00517 * 180.25248 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1960 5 16 2.4042 0.1763 -2.5532 6 8 2.9114 -0.7584 -3.4957 7 8 1.2937 1.0223 -2.8182 8 7 3.6665 1.1721 -2.1565 9 6 5.0384 0.6588 -2.1756 10 6 3.4111 2.5663 -1.7862 11 6 3.7835 2.7788 -0.3415 12 1 4.2133 1.9694 0.2300 13 6 3.5754 4.0063 0.2508 14 7 3.0523 4.9920 -0.4452 15 14 4.0363 4.2693 2.0418 16 1 5.4406 4.7444 2.1270 17 1 3.1332 5.2843 2.6414 18 1 3.9013 2.9885 2.7809 19 6 2.0399 -0.7212 1.2493 20 6 3.5597 -0.8765 1.1640 21 6 1.3905 -2.1034 1.3410 22 6 1.6851 0.0827 2.4736 23 6 1.8635 -0.4598 3.7323 24 6 1.5375 0.2775 4.8554 25 6 1.0340 1.5577 4.7195 26 6 0.8512 2.0985 3.4605 27 6 1.1812 1.3628 2.3377 28 1 -0.3633 0.5382 -0.8756 29 1 -0.3633 -1.0272 -0.0284 30 1 -0.3634 0.4891 0.9038 31 1 2.1157 -1.6557 -1.1931 32 1 5.4690 0.8096 -3.1656 33 1 5.6357 1.1904 -1.4348 34 1 5.0315 -0.4056 -1.9408 35 1 4.0092 3.2249 -2.4161 36 1 2.3539 2.7916 -1.9258 37 1 2.9062 5.8558 -0.0286 38 1 3.9106 -1.4818 1.9997 39 1 3.8229 -1.3649 0.2258 40 1 4.0282 0.1068 1.2055 41 1 0.3078 -1.9929 1.4018 42 1 1.6471 -2.6850 0.4556 43 1 1.7534 -2.6171 2.2312 44 1 2.2568 -1.4600 3.8385 45 1 1.6766 -0.1465 5.8388 46 1 0.7797 2.1339 5.5968 47 1 0.4537 3.0970 3.3542 48 1 1.0422 1.7868 1.3541 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076387839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -56.058238 kcal Electronic energy + Delta-G solvation = -30601.316221 eV Core-core repulsion = 26782.842871 eV Total energy + Delta-G solvation = -3818.473350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.03563 -37.27430 -36.59404 -35.50507 -35.20956 -33.10682 -32.48990 -30.96164 -29.46460 -29.07895 -27.72056 -27.00196 -25.26364 -23.70220 -22.27820 -22.19071 -21.77493 -19.00303 -18.94482 -17.50374 -16.70069 -16.51571 -16.45517 -15.77063 -15.15431 -14.83655 -14.54512 -14.24290 -14.12839 -13.77973 -13.56937 -13.42700 -13.27367 -13.14626 -12.91180 -12.38679 -12.10471 -12.05369 -11.92797 -11.82985 -11.73540 -11.68949 -11.48649 -11.45155 -11.31193 -11.25220 -11.02848 -10.99941 -10.74239 -10.68281 -10.62483 -10.39235 -10.04205 -9.98739 -9.66638 -9.12893 -8.61473 -8.53759 -8.39995 -8.02834 -6.14084 -4.20599 1.28242 1.62140 1.68293 3.23167 3.31703 3.36483 3.52147 4.04977 4.16710 4.34540 4.75308 4.80065 5.08491 5.14834 5.20117 5.20461 5.24272 5.36110 5.41089 5.53058 5.63979 5.66877 5.74099 5.77788 5.80044 5.89699 5.99105 6.08685 6.12722 6.13491 6.14801 6.22279 6.28896 6.33252 6.33986 6.52689 6.56354 6.66289 6.67958 6.74435 6.83027 6.93312 7.27234 7.29681 7.36738 7.43179 7.63225 7.83600 8.14035 8.85334 9.45836 10.93562 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009911 B = 0.006947 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.545872 B = 4029.372639 C = 5759.181756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.152 3.848 3 H 0.118 0.882 4 N -1.123 6.123 5 S 2.782 3.218 6 O -1.003 7.003 7 O -0.978 6.978 8 N -0.995 5.995 9 C 0.108 3.892 10 C 0.241 3.759 11 C -0.535 4.535 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.886 5.886 15 Si 0.878 3.122 16 H -0.283 1.283 17 H -0.285 1.285 18 H -0.263 1.263 19 C -0.025 4.025 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.062 4.062 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.117 4.117 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.405 0.595 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.029 0.971 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.119 0.881 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -11.670 7.263 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.046 3.954 3 H 0.136 0.864 4 N -0.881 5.881 5 S 2.790 3.210 6 O -0.987 6.987 7 O -0.962 6.962 8 N -0.838 5.838 9 C -0.038 4.038 10 C 0.119 3.881 11 C -0.575 4.575 12 H 0.084 0.916 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.705 3.295 16 H -0.209 1.209 17 H -0.211 1.211 18 H -0.187 1.187 19 C -0.026 4.026 20 C -0.196 4.196 21 C -0.198 4.198 22 C -0.062 4.062 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.124 4.124 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.238 0.762 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.833 -11.321 6.392 13.306 hybrid contribution 0.621 0.020 1.549 1.669 sum -2.212 -11.301 7.941 13.988 Atomic orbital electron populations 1.22533 0.95654 1.02250 1.03302 1.20974 0.93845 0.97721 0.82903 0.86441 1.56135 1.82455 1.18813 1.30716 1.01865 0.73629 0.72508 0.73013 1.93547 1.81123 1.64242 1.59763 1.93581 1.51381 1.67372 1.83838 1.57558 1.17846 1.23914 1.84437 1.21187 0.83875 0.97319 1.01468 1.19261 0.98657 0.74488 0.95699 1.21454 1.42653 0.97308 0.96038 0.91626 1.24892 0.94869 0.95914 0.97697 1.69942 1.43130 1.02845 1.36487 0.86783 0.78374 0.78792 0.85507 1.20924 1.21105 1.18710 1.19663 0.96505 0.94551 0.91896 1.21893 0.93389 1.03069 1.01213 1.21974 1.01092 0.95292 1.01428 1.19658 0.98227 0.94482 0.93861 1.20874 1.00972 0.99719 0.91992 1.21000 1.00441 0.94922 0.98110 1.21078 1.00619 0.95773 0.97235 1.21189 0.99985 0.99744 0.92636 1.21452 0.97355 0.93708 0.99836 0.91110 0.92384 0.91213 0.76230 0.93886 0.90343 0.93294 0.95249 0.92522 0.92603 0.93097 0.92178 0.91049 0.91916 0.92480 0.92592 0.86543 0.86715 0.86722 0.86257 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.33 37.16 0.31 -2.33 16 2 C 0.15 2.39 1.62 -67.93 -0.11 2.28 16 3 H 0.12 2.22 4.84 -51.93 -0.25 1.97 16 4 N -1.12 -17.09 4.44 -4.90 -0.02 -17.11 16 5 S 2.78 53.08 5.97 -107.50 -0.64 52.43 16 6 O -1.00 -20.28 17.47 -57.17 -1.00 -21.28 16 7 O -0.98 -21.80 15.78 -57.17 -0.90 -22.70 16 8 N -0.99 -19.74 3.33 -123.05 -0.41 -20.15 16 9 C 0.11 1.83 10.17 59.84 0.61 2.44 16 10 C 0.24 5.73 5.35 -5.19 -0.03 5.70 16 11 C -0.54 -13.00 7.42 -34.44 -0.26 -13.26 16 12 H 0.07 1.53 6.55 -52.49 -0.34 1.19 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 15 Si 0.88 20.00 29.54 -169.99 -5.02 14.98 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 19 C -0.02 -0.33 0.45 -155.66 -0.07 -0.40 16 20 C -0.14 -1.89 8.20 37.16 0.30 -1.58 16 21 C -0.14 -1.54 7.51 37.15 0.28 -1.26 16 22 C -0.06 -0.91 4.43 -104.62 -0.46 -1.37 16 23 C -0.12 -1.55 8.98 -39.59 -0.36 -1.91 16 24 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 25 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.12 -1.83 10.05 -39.59 -0.40 -2.23 16 27 C -0.11 -1.74 7.48 -39.58 -0.30 -2.04 16 28 H 0.07 1.17 7.63 -51.93 -0.40 0.77 16 29 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 30 H 0.07 0.99 5.72 -51.93 -0.30 0.69 16 31 H 0.40 5.06 7.21 -34.47 -0.25 4.81 16 32 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.08 1.33 7.40 -51.93 -0.38 0.95 16 34 H 0.05 0.71 7.97 -51.93 -0.41 0.29 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.48 6.68 -51.93 -0.35 1.13 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 38 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 39 H 0.06 0.75 7.06 -51.93 -0.37 0.39 16 40 H 0.07 1.16 7.05 -51.93 -0.37 0.79 16 41 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 42 H 0.06 0.56 6.84 -51.93 -0.36 0.21 16 43 H 0.06 0.55 6.92 -51.93 -0.36 0.19 16 44 H 0.12 1.29 7.02 -52.49 -0.37 0.92 16 45 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 48 H 0.14 2.46 5.15 -52.48 -0.27 2.19 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -30.28 380.36 -10.00 -40.27 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.10 Total: 9.86 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.37 Total: -18.45 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.30 Total: -60.84 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -1.90 Total: -43.98 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.64 Total: 52.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.28 -10.00 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076387839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.786 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds