Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46689 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46812 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00063 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00212 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00189 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99712 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47426 * 89.99638 * 12 10 8 14 14 H 1.48501 * 109.47045 * 210.00047 * 12 10 8 15 15 H 1.48507 * 109.46759 * 330.00040 * 12 10 8 16 16 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 17 17 C 1.38257 * 119.99965 * 79.72689 * 16 2 1 18 18 C 1.38210 * 119.99954 * 179.76915 * 17 16 2 19 19 C 1.38254 * 119.99714 * 0.50267 * 18 17 16 20 20 C 1.38208 * 120.00414 * 359.75350 * 19 18 17 21 21 S 1.76197 * 120.00202 * 179.97438 * 20 19 18 22 22 O 1.42095 * 106.40387 * 23.55766 * 21 20 19 23 23 O 1.42109 * 106.40292 * 156.48161 * 21 20 19 24 24 N 1.65604 * 107.21624 * 270.01554 * 21 20 19 25 25 C 1.46502 * 119.99857 * 90.00238 * 24 21 20 26 26 C 1.46494 * 120.00197 * 270.00094 * 24 21 20 27 27 C 1.38208 * 119.99789 * 260.00392 * 16 2 1 28 28 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 29 29 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 31 31 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 32 32 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 33 33 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 34 34 H 1.09006 * 109.47203 * 299.99590 * 6 5 4 35 35 H 1.08995 * 109.47152 * 60.00028 * 6 5 4 36 36 H 1.09006 * 109.46807 * 299.99641 * 7 6 5 37 37 H 1.08995 * 109.47458 * 60.00024 * 7 6 5 38 38 H 0.96997 * 120.00150 * 179.97438 * 11 10 8 39 39 H 1.07998 * 119.99901 * 0.02562 * 17 16 2 40 40 H 1.08001 * 120.00004 * 180.23521 * 18 17 16 41 41 H 1.08005 * 119.99536 * 179.72468 * 19 18 17 42 42 H 1.09000 * 109.47081 * 89.99546 * 25 24 21 43 43 H 1.08999 * 109.47192 * 210.00222 * 25 24 21 44 44 H 1.09001 * 109.46876 * 329.99997 * 25 24 21 45 45 H 1.09005 * 109.47153 * 90.00335 * 26 24 21 46 46 H 1.08999 * 109.46940 * 209.99811 * 26 24 21 47 47 H 1.08999 * 109.47395 * 329.99991 * 26 24 21 48 48 H 1.07999 * 120.00382 * 359.97438 * 27 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 6 2.6621 0.4206 -4.7691 8 6 3.1675 -0.3236 -5.9781 9 1 3.4172 -1.3716 -5.9018 10 6 3.3113 0.3334 -7.1818 11 7 3.7529 -0.3159 -8.2368 12 14 2.8788 2.1459 -7.3140 13 1 4.0788 2.9649 -7.0071 14 1 2.4148 2.4447 -8.6927 15 1 1.7987 2.4688 -6.3473 16 6 2.0324 -0.7105 1.2304 17 6 2.0615 -2.0922 1.2674 18 6 2.5268 -2.7437 2.3940 19 6 2.9533 -2.0138 3.4879 20 6 2.9192 -0.6326 3.4531 21 16 3.4621 0.2976 4.8475 22 8 4.3496 -0.5442 5.5706 23 8 3.8330 1.5783 4.3559 24 7 2.1442 0.5346 5.8219 25 6 1.8235 -0.4380 6.8695 26 6 1.2991 1.7167 5.6363 27 6 2.4586 0.0193 2.3240 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.4496 -1.4979 -1.4101 32 1 1.0870 0.6163 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 3.5917 -0.9261 -3.3684 35 1 1.9202 -1.3566 -3.8031 36 1 1.6667 0.8143 -4.9752 37 1 3.3383 1.2442 -4.5400 38 1 3.8536 0.1462 -9.0836 39 1 1.7246 -2.6624 0.4143 40 1 2.5531 -3.8231 2.4214 41 1 3.3127 -2.5230 4.3700 42 1 2.3289 -0.1567 7.7934 43 1 0.7462 -0.4523 7.0345 44 1 2.1569 -1.4285 6.5601 45 1 0.5045 1.4874 4.9262 46 1 0.8605 2.0035 6.5921 47 1 1.9033 2.5387 5.2526 48 1 2.4321 1.0986 2.2967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173382679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -53.201307 kcal Electronic energy + Delta-G solvation = -27004.198303 eV Core-core repulsion = 23185.848839 eV Total energy + Delta-G solvation = -3818.349464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.88672 -37.62195 -37.10593 -36.60890 -36.14812 -34.20997 -32.37279 -31.53393 -30.72675 -29.06495 -28.59017 -26.32324 -25.15516 -24.10857 -23.45775 -22.08751 -21.26527 -20.12993 -19.18915 -18.03017 -17.76207 -16.78886 -16.58976 -16.37687 -15.80717 -15.47609 -15.12689 -14.80945 -14.80078 -14.39979 -14.19446 -13.93687 -13.72343 -13.56474 -13.34182 -13.09733 -12.83645 -12.80395 -12.61588 -12.54153 -12.47467 -12.28925 -12.10846 -12.08363 -11.96410 -11.77342 -11.60079 -11.13596 -11.05599 -10.93047 -10.80856 -9.97891 -9.75982 -9.70036 -9.59153 -9.51242 -9.18631 -9.09758 -8.53534 -8.35637 -6.03765 -4.01633 -0.00829 0.58353 1.01794 2.53544 3.22066 3.30862 3.37911 3.40940 3.43542 3.88053 4.18687 4.29057 4.45325 4.47199 4.54947 4.72290 4.80838 4.83271 4.87383 5.00374 5.02434 5.09890 5.14005 5.26393 5.29986 5.30998 5.31924 5.43303 5.44773 5.56232 5.62375 5.67293 5.72346 5.74680 5.89320 6.01004 6.04049 6.13075 6.17052 6.52127 6.54197 6.56947 6.89421 7.11755 7.32134 7.39295 7.47604 7.80302 8.55030 9.01564 9.58716 11.09752 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.002001 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.709602 B =13987.924024 C =14268.782495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.117 3.883 3 H 0.090 0.910 4 N -0.683 5.683 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.519 4.519 9 H 0.071 0.929 10 C 0.064 3.936 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C -0.080 4.080 17 C -0.040 4.040 18 C -0.139 4.139 19 C -0.029 4.029 20 C -0.676 4.676 21 S 2.694 3.306 22 O -0.955 6.955 23 O -0.954 6.954 24 N -1.007 6.007 25 C 0.093 3.907 26 C 0.082 3.918 27 C -0.019 4.019 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.340 0.660 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 -0.556 33.264 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 H 0.108 0.892 4 N -0.313 5.313 5 C -0.072 4.072 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.557 4.557 9 H 0.090 0.910 10 C -0.137 4.137 11 N -0.543 5.543 12 Si 0.709 3.291 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.081 4.081 17 C -0.059 4.059 18 C -0.158 4.158 19 C -0.048 4.048 20 C -0.764 4.764 21 S 2.785 3.215 22 O -0.945 6.945 23 O -0.944 6.944 24 N -0.846 5.846 25 C -0.053 4.053 26 C -0.064 4.064 27 C -0.039 4.039 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.235 -0.139 33.406 34.407 hybrid contribution -1.657 0.548 -0.986 2.005 sum -9.892 0.409 32.420 33.898 Atomic orbital electron populations 1.22496 0.96071 1.02483 1.02625 1.20499 0.92766 0.97742 0.88367 0.89204 1.60632 1.56765 1.10096 1.03828 1.22207 0.99232 0.95510 0.90211 1.21447 1.00877 0.98597 0.92821 1.19540 0.96366 0.95336 0.93817 1.21142 1.43544 0.98322 0.92712 0.91049 1.25053 0.94680 0.98149 0.95771 1.69915 1.46823 1.36635 1.00942 0.86758 0.79299 0.85901 0.77174 1.20272 1.21437 1.19124 1.19983 0.99132 0.94042 0.94963 1.21310 0.93452 0.94144 0.96975 1.21294 1.00462 1.00406 0.93668 1.20845 0.93440 0.91696 0.98858 1.30805 1.19606 1.07222 1.18760 1.01972 0.72773 0.73655 0.73144 1.93578 1.60580 1.69071 1.71308 1.93582 1.80534 1.39421 1.80855 1.57339 1.47990 1.32279 1.46995 1.21514 1.02117 0.91249 0.90371 1.21645 0.95072 0.86716 1.02929 1.20725 0.92053 0.99985 0.91090 0.91718 0.92218 0.92024 0.84200 0.95462 0.91299 0.91917 0.93031 0.96867 0.97025 0.92768 0.85064 0.85033 0.84640 0.92066 0.90773 0.90935 0.92511 0.90400 0.89660 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.14 37.16 0.34 -1.26 16 2 C 0.12 1.26 2.79 -68.86 -0.19 1.07 16 3 H 0.09 1.00 7.66 -51.93 -0.40 0.60 16 4 N -0.68 -8.84 5.71 -107.94 -0.62 -9.46 16 5 C 0.06 0.88 5.48 -3.82 -0.02 0.86 16 6 C -0.10 -1.93 5.41 -26.72 -0.14 -2.08 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 9 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 12 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 15 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 16 C -0.08 -0.85 4.95 -104.62 -0.52 -1.37 16 17 C -0.04 -0.40 9.32 -39.58 -0.37 -0.77 16 18 C -0.14 -1.25 10.05 -39.59 -0.40 -1.64 16 19 C -0.03 -0.27 9.52 -39.59 -0.38 -0.64 16 20 C -0.68 -6.79 5.97 -39.58 -0.24 -7.02 16 21 S 2.69 26.85 5.65 -107.50 -0.61 26.24 16 22 O -0.96 -11.60 16.36 -57.17 -0.94 -12.53 16 23 O -0.95 -12.00 15.89 -57.17 -0.91 -12.91 16 24 N -1.01 -6.80 3.58 -129.20 -0.46 -7.26 16 25 C 0.09 0.43 10.29 59.85 0.62 1.05 16 26 C 0.08 0.41 10.66 59.84 0.64 1.05 16 27 C -0.02 -0.20 9.15 -39.58 -0.36 -0.56 16 28 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.34 3.98 7.82 -39.29 -0.31 3.67 16 32 H 0.03 0.40 7.43 -51.93 -0.39 0.02 16 33 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.13 1.15 7.26 -52.49 -0.38 0.77 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.14 1.01 7.62 -52.48 -0.40 0.61 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 44 H 0.07 0.31 7.79 -51.93 -0.40 -0.09 16 45 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 47 H 0.08 0.49 7.02 -51.93 -0.36 0.13 16 48 H 0.14 1.28 7.60 -52.49 -0.40 0.88 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -35.70 401.10 -10.94 -46.64 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.00 Total: -1.41 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -1.57 Total: -25.21 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.31 Total: -44.10 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.84 Total: -25.44 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Atomic # 16 Polarization: 26.85 SS G_CDS: -0.61 Total: 26.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.70 -10.94 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173382679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.559 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds