Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46689 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46812 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00063 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00212 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00189 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99712 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47426 * 89.99638 * 12 10 8 14 14 H 1.48501 * 109.47045 * 210.00047 * 12 10 8 15 15 H 1.48507 * 109.46759 * 330.00040 * 12 10 8 16 16 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 17 17 C 1.38257 * 119.99965 * 79.72689 * 16 2 1 18 18 C 1.38210 * 119.99954 * 179.76915 * 17 16 2 19 19 C 1.38254 * 119.99714 * 0.50267 * 18 17 16 20 20 C 1.38208 * 120.00414 * 359.75350 * 19 18 17 21 21 S 1.76197 * 120.00202 * 179.97438 * 20 19 18 22 22 O 1.42095 * 106.40387 * 23.55766 * 21 20 19 23 23 O 1.42109 * 106.40292 * 156.48161 * 21 20 19 24 24 N 1.65604 * 107.21624 * 270.01554 * 21 20 19 25 25 C 1.46502 * 119.99857 * 90.00238 * 24 21 20 26 26 C 1.46494 * 120.00197 * 270.00094 * 24 21 20 27 27 C 1.38208 * 119.99789 * 260.00392 * 16 2 1 28 28 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 29 29 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 31 31 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 32 32 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 33 33 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 34 34 H 1.09006 * 109.47203 * 299.99590 * 6 5 4 35 35 H 1.08995 * 109.47152 * 60.00028 * 6 5 4 36 36 H 1.09006 * 109.46807 * 299.99641 * 7 6 5 37 37 H 1.08995 * 109.47458 * 60.00024 * 7 6 5 38 38 H 0.96997 * 120.00150 * 179.97438 * 11 10 8 39 39 H 1.07998 * 119.99901 * 0.02562 * 17 16 2 40 40 H 1.08001 * 120.00004 * 180.23521 * 18 17 16 41 41 H 1.08005 * 119.99536 * 179.72468 * 19 18 17 42 42 H 1.09000 * 109.47081 * 89.99546 * 25 24 21 43 43 H 1.08999 * 109.47192 * 210.00222 * 25 24 21 44 44 H 1.09001 * 109.46876 * 329.99997 * 25 24 21 45 45 H 1.09005 * 109.47153 * 90.00335 * 26 24 21 46 46 H 1.08999 * 109.46940 * 209.99811 * 26 24 21 47 47 H 1.08999 * 109.47395 * 329.99991 * 26 24 21 48 48 H 1.07999 * 120.00382 * 359.97438 * 27 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 6 2.6621 0.4206 -4.7691 8 6 3.1675 -0.3236 -5.9781 9 1 3.4172 -1.3716 -5.9018 10 6 3.3113 0.3334 -7.1818 11 7 3.7529 -0.3159 -8.2368 12 14 2.8788 2.1459 -7.3140 13 1 4.0788 2.9649 -7.0071 14 1 2.4148 2.4447 -8.6927 15 1 1.7987 2.4688 -6.3473 16 6 2.0324 -0.7105 1.2304 17 6 2.0615 -2.0922 1.2674 18 6 2.5268 -2.7437 2.3940 19 6 2.9533 -2.0138 3.4879 20 6 2.9192 -0.6326 3.4531 21 16 3.4621 0.2976 4.8475 22 8 4.3496 -0.5442 5.5706 23 8 3.8330 1.5783 4.3559 24 7 2.1442 0.5346 5.8219 25 6 1.8235 -0.4380 6.8695 26 6 1.2991 1.7167 5.6363 27 6 2.4586 0.0193 2.3240 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.4496 -1.4979 -1.4101 32 1 1.0870 0.6163 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 3.5917 -0.9261 -3.3684 35 1 1.9202 -1.3566 -3.8031 36 1 1.6667 0.8143 -4.9752 37 1 3.3383 1.2442 -4.5400 38 1 3.8536 0.1462 -9.0836 39 1 1.7246 -2.6624 0.4143 40 1 2.5531 -3.8231 2.4214 41 1 3.3127 -2.5230 4.3700 42 1 2.3289 -0.1567 7.7934 43 1 0.7462 -0.4523 7.0345 44 1 2.1569 -1.4285 6.5601 45 1 0.5045 1.4874 4.9262 46 1 0.8605 2.0035 6.5921 47 1 1.9033 2.5387 5.2526 48 1 2.4321 1.0986 2.2967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173382679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = -78.217969 kcal Electronic energy + Delta-G solvation = -27005.283107 eV Core-core repulsion = 23185.848839 eV Total energy + Delta-G solvation = -3819.434268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64758 -38.47499 -38.13449 -37.13676 -36.95504 -35.85680 -34.13457 -32.26546 -32.04295 -30.04465 -28.96064 -27.90863 -25.62645 -24.97048 -24.44906 -23.43354 -22.18834 -21.70086 -19.90641 -18.97161 -18.70242 -18.46858 -17.34890 -17.09488 -16.72941 -16.47688 -16.25363 -16.03067 -15.48547 -15.42484 -15.12024 -14.97472 -14.71958 -14.62116 -14.34886 -14.08964 -13.77966 -13.61608 -13.54503 -13.43669 -13.32948 -13.29735 -13.23163 -13.05774 -12.70022 -12.64921 -12.55157 -12.53362 -12.47761 -11.97401 -11.79898 -11.77576 -11.52913 -11.42486 -11.25970 -10.76797 -10.34612 -10.03734 -9.87747 -9.35950 -8.29671 -6.33915 -0.73079 -0.16811 0.28150 1.35993 1.37429 1.49498 1.90348 2.35997 2.47963 2.70034 3.05548 3.08426 3.28017 3.68732 3.84174 3.87244 4.02104 4.07348 4.20585 4.27393 4.28501 4.35256 4.41936 4.52595 4.55664 4.60968 4.67341 4.77692 4.78711 4.81003 4.92639 4.95807 4.97107 4.97885 4.98695 5.04835 5.05147 5.12506 5.19855 5.31792 5.41561 5.53047 5.55097 5.61737 5.66450 5.85346 6.07441 6.29216 6.45896 6.74539 7.30566 8.87238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.002001 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.709602 B =13987.924024 C =14268.782495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 H 0.086 0.914 4 N -0.689 5.689 5 C 0.071 3.929 6 C -0.091 4.091 7 C -0.011 4.011 8 C -0.533 4.533 9 H 0.029 0.971 10 C -0.001 4.001 11 N -0.953 5.953 12 Si 0.955 3.045 13 H -0.268 1.268 14 H -0.284 1.284 15 H -0.243 1.243 16 C -0.090 4.090 17 C -0.050 4.050 18 C -0.140 4.140 19 C -0.036 4.036 20 C -0.680 4.680 21 S 2.705 3.295 22 O -0.982 6.982 23 O -0.986 6.986 24 N -1.002 6.002 25 C 0.081 3.919 26 C 0.073 3.927 27 C -0.032 4.032 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.347 0.653 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.266 0.734 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.684 0.425 35.222 37.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 H 0.104 0.896 4 N -0.321 5.321 5 C -0.058 4.058 6 C -0.129 4.129 7 C -0.049 4.049 8 C -0.571 4.571 9 H 0.047 0.953 10 C -0.197 4.197 11 N -0.594 5.594 12 Si 0.778 3.222 13 H -0.193 1.193 14 H -0.210 1.210 15 H -0.167 1.167 16 C -0.092 4.092 17 C -0.068 4.068 18 C -0.158 4.158 19 C -0.055 4.055 20 C -0.768 4.768 21 S 2.797 3.203 22 O -0.972 6.972 23 O -0.976 6.976 24 N -0.843 5.843 25 C -0.063 4.063 26 C -0.071 4.071 27 C -0.052 4.052 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.166 0.834 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.168 0.833 35.399 36.840 hybrid contribution -1.049 0.108 -1.543 1.869 sum -11.217 0.941 33.856 35.678 Atomic orbital electron populations 1.22426 0.94429 1.03107 1.03058 1.20499 0.94055 0.97255 0.87332 0.89618 1.60516 1.57818 1.10132 1.03603 1.21904 0.99491 0.95085 0.89299 1.21261 1.00254 0.98067 0.93282 1.19494 0.96330 0.95730 0.93302 1.21525 1.43490 0.97046 0.95066 0.95268 1.26096 0.94534 1.03858 0.95226 1.70077 1.48436 1.39070 1.01771 0.85595 0.79892 0.78931 0.77819 1.19347 1.20957 1.16676 1.20014 0.99776 0.94513 0.94872 1.21516 0.93605 0.94011 0.97704 1.21607 0.99470 1.01738 0.93032 1.21145 0.93136 0.91538 0.99689 1.30806 1.19700 1.07686 1.18621 1.01369 0.73183 0.72683 0.73038 1.93535 1.62294 1.69513 1.71856 1.93534 1.81698 1.40879 1.81525 1.57128 1.47375 1.33186 1.46595 1.21788 1.03908 0.90856 0.89748 1.21861 0.94921 0.85711 1.04648 1.20846 0.92535 1.00395 0.91379 0.92123 0.91517 0.90693 0.83382 0.94266 0.91506 0.93607 0.93178 0.95958 0.96492 0.92532 0.84182 0.82589 0.83071 0.91654 0.88227 0.90665 0.91183 0.88035 0.90790 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.14 71.98 0.66 -2.02 16 2 C 0.12 2.37 2.79 44.17 0.12 2.49 16 3 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 4 N -0.69 -16.80 5.71 -495.43 -2.83 -19.63 16 5 C 0.07 2.08 5.48 86.31 0.47 2.55 16 6 C -0.09 -3.48 5.41 30.60 0.17 -3.32 16 7 C -0.01 -0.50 4.04 29.85 0.12 -0.37 16 8 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 9 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 10 C 0.00 -0.05 5.47 84.66 0.46 0.42 16 11 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 12 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 15 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 16 C -0.09 -1.80 4.95 -19.87 -0.10 -1.90 16 17 C -0.05 -0.90 9.32 22.27 0.21 -0.69 16 18 C -0.14 -2.22 10.05 22.27 0.22 -2.00 16 19 C -0.04 -0.61 9.52 22.27 0.21 -0.40 16 20 C -0.68 -13.02 5.97 22.27 0.13 -12.89 16 21 S 2.71 52.81 5.65 -56.49 -0.32 52.49 16 22 O -0.98 -23.57 16.36 -128.00 -2.09 -25.67 16 23 O -0.99 -25.06 15.89 -128.00 -2.03 -27.09 16 24 N -1.00 -12.11 3.58 -562.69 -2.02 -14.13 16 25 C 0.08 0.60 10.29 127.77 1.31 1.91 16 26 C 0.07 0.61 10.66 127.77 1.36 1.97 16 27 C -0.03 -0.64 9.15 22.27 0.20 -0.44 16 28 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 29 H 0.07 0.95 8.13 -2.38 -0.02 0.93 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.35 7.55 7.82 -89.70 -0.70 6.85 16 32 H 0.04 1.06 7.43 -2.39 -0.02 1.05 16 33 H 0.07 2.00 8.06 -2.38 -0.02 1.98 16 34 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.02 1.00 7.20 -2.38 -0.02 0.98 16 37 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.14 2.20 7.26 -2.91 -0.02 2.17 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.15 2.00 7.62 -2.91 -0.02 1.98 16 42 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.10 0.23 8.07 -2.39 -0.02 0.21 16 44 H 0.07 0.52 7.79 -2.39 -0.02 0.50 16 45 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 47 H 0.07 0.80 7.02 -2.39 -0.02 0.78 16 48 H 0.14 2.58 7.60 -2.91 -0.02 2.56 16 Total: -1.00 -78.21 401.10 -1.12 -79.33 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.18 Total: 14.36 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 5.81 Total: -45.76 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -4.55 Total: -94.20 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -4.13 Total: -52.76 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 52.81 SS G_CDS: -0.32 Total: 52.49 kcal Total: -78.21 -1.12 -79.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173382679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.112 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds