Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00260 * 2 1 4 4 C 1.52997 * 109.46940 * 125.00042 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.47423 * 125.64829 * 359.41380 * 8 6 5 10 10 C 1.55137 * 104.71983 * 155.82193 * 9 8 6 11 11 C 1.55161 * 101.48526 * 37.29517 * 10 9 8 12 12 H 1.08998 * 110.72169 * 82.69432 * 11 10 9 13 13 N 1.46499 * 110.71602 * 205.97085 * 11 10 9 14 14 C 1.34776 * 120.00007 * 268.52014 * 13 11 10 15 15 O 1.21283 * 119.99642 * 0.02562 * 14 13 11 16 16 C 1.50695 * 120.00296 * 180.02562 * 14 13 11 17 17 S 1.80996 * 109.47364 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00040 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00027 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00107 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99665 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47194 * 59.99990 * 22 20 18 24 24 H 1.48507 * 109.46991 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47098 * 299.99852 * 22 20 18 26 26 C 1.47019 * 125.64379 * 179.72980 * 8 6 5 27 27 H 1.09003 * 109.88210 * 300.43359 * 26 8 6 28 28 C 1.52995 * 109.88773 * 61.44329 * 26 8 6 29 29 H 1.07996 * 120.00348 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99803 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.99803 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46839 * 4.99654 * 3 2 1 33 33 H 1.09001 * 109.46310 * 244.99417 * 3 2 1 34 34 H 1.09000 * 109.47849 * 59.99708 * 4 3 2 35 35 H 1.08998 * 109.47443 * 299.99576 * 4 3 2 36 36 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 37 37 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 38 38 H 1.09007 * 110.36652 * 274.74673 * 9 8 6 39 39 H 1.08993 * 110.36828 * 37.07553 * 9 8 6 40 40 H 1.08994 * 111.19025 * 279.18980 * 10 9 8 41 41 H 1.08997 * 110.90402 * 155.27666 * 10 9 8 42 42 H 0.97001 * 120.00068 * 88.52703 * 13 11 10 43 43 H 1.09003 * 109.46688 * 300.00339 * 16 14 13 44 44 H 1.09000 * 109.47320 * 59.99093 * 16 14 13 45 45 H 0.96998 * 119.99650 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.47179 * 58.54599 * 28 26 8 47 47 H 1.09001 * 109.47514 * 178.54318 * 28 26 8 48 48 H 1.08993 * 109.47566 * 298.54714 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 6 4.7571 2.6855 2.3455 7 8 4.8200 1.7391 3.1014 8 7 5.5383 3.7646 2.5502 9 6 5.5679 4.9757 1.7101 10 6 6.0930 6.0937 2.6486 11 6 7.1447 5.3227 3.4894 12 1 8.0924 5.2565 2.9550 13 7 7.3286 5.9567 4.7972 14 6 8.2795 6.8974 4.9623 15 8 8.9827 7.2193 4.0280 16 6 8.4691 7.5492 6.3077 17 16 9.8109 8.7599 6.2079 18 6 9.8139 9.3508 7.8679 19 1 9.1114 8.9517 8.5845 20 6 10.7192 10.3293 8.2546 21 7 11.5759 10.8154 7.3814 22 14 10.7219 10.9562 10.0143 23 1 10.9948 9.8286 10.9411 24 1 11.7764 11.9904 10.1696 25 1 9.3972 11.5479 10.3310 26 6 6.5067 3.9260 3.6445 27 1 5.9958 3.8565 4.6049 28 6 7.5846 2.8445 3.5494 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.7400 0.5064 1.0922 35 1 2.4773 1.2356 2.1130 36 1 3.0959 3.4846 1.2705 37 1 4.3584 2.7547 0.2498 38 1 6.2445 4.8361 0.8669 39 1 4.5653 5.2171 1.3571 40 1 5.2959 6.4832 3.2818 41 1 6.5613 6.8942 2.0759 42 1 6.7660 5.6995 5.5444 43 1 7.5475 8.0521 6.6009 44 1 8.7193 6.7891 7.0478 45 1 12.2083 11.4994 7.6515 46 1 8.0859 2.9150 2.5840 47 1 8.3128 2.9860 4.3480 48 1 7.1233 1.8620 3.6483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756571813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -67.890791 kcal Electronic energy + Delta-G solvation = -26316.217235 eV Core-core repulsion = 22497.230787 eV Total energy + Delta-G solvation = -3818.986448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76408 -39.29530 -37.76850 -36.32749 -34.22291 -32.92187 -32.44945 -31.58520 -31.13794 -29.00904 -27.50663 -25.69211 -25.33932 -23.57093 -22.30487 -21.15620 -20.56324 -20.29498 -19.07134 -17.88377 -17.44590 -16.95095 -16.39945 -16.00385 -15.76402 -15.63320 -14.96485 -14.82202 -14.58816 -14.32814 -14.08251 -13.95358 -13.85338 -13.37294 -13.27482 -12.99023 -12.82711 -12.66444 -12.56872 -12.30702 -12.13752 -12.04105 -11.97356 -11.76397 -11.39585 -11.31261 -11.14179 -11.07572 -11.05293 -11.01949 -10.78616 -10.07528 -9.84975 -9.75162 -9.49650 -9.09629 -9.05216 -8.94097 -8.27793 -6.52963 -6.23810 -3.94778 1.85442 2.34057 2.49567 2.98410 3.02555 3.22287 3.26427 3.29784 3.65883 3.98066 4.18469 4.22037 4.31244 4.43629 4.51708 4.73525 4.79152 4.79885 4.82766 4.88053 5.00811 5.06280 5.10097 5.11508 5.11852 5.18609 5.27984 5.34271 5.39013 5.45351 5.50170 5.59932 5.70271 5.72465 5.75745 5.84350 5.88393 5.91046 6.02262 6.06898 6.10325 6.20862 6.34095 6.52429 7.17534 7.56985 7.59455 7.86810 8.32872 8.51161 9.21607 10.83553 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034033 B = 0.001615 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.537071 B =17328.037145 C =17439.532821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.529 3.471 7 O -0.537 6.537 8 N -0.616 5.616 9 C 0.100 3.900 10 C -0.147 4.147 11 C 0.141 3.859 12 H 0.109 0.891 13 N -0.730 5.730 14 C 0.536 3.464 15 O -0.514 6.514 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.130 3.870 27 H 0.080 0.920 28 C -0.162 4.162 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.551 -17.773 -14.909 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.318 3.682 7 O -0.414 6.414 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.186 4.186 11 C 0.034 3.966 12 H 0.126 0.874 13 N -0.384 5.384 14 C 0.322 3.678 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C 0.026 3.974 27 H 0.098 0.902 28 C -0.220 4.220 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.234 0.766 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.224 -17.677 -16.107 30.067 hybrid contribution -1.092 0.012 2.548 2.772 sum -19.316 -17.665 -13.558 29.479 Atomic orbital electron populations 1.23864 0.95991 1.01850 1.01662 1.22957 0.96032 0.98573 0.99428 1.20797 0.98189 0.95558 0.98731 1.21296 0.97715 0.96109 0.98675 1.21694 0.98033 1.00690 0.97213 1.20417 0.80347 0.80855 0.86570 1.90708 1.68261 1.34805 1.47637 1.48579 1.39949 1.17424 1.29155 1.22432 1.01972 0.83870 0.94084 1.23299 0.99202 0.97660 0.98461 1.21917 0.99500 0.89833 0.85356 0.87356 1.45952 1.38471 1.42102 1.11890 1.20333 0.78671 0.78328 0.90423 1.90704 1.44578 1.61234 1.42296 1.23539 1.06858 1.04014 0.96073 1.85379 1.38500 1.43434 1.15881 1.22829 1.23090 1.26693 0.95929 0.90960 1.24982 0.94519 0.95447 0.98526 1.70006 1.18851 1.27126 1.34303 0.86229 0.77993 0.78540 0.82772 1.19927 1.20787 1.19934 1.21702 0.89850 0.94782 0.91061 0.90197 1.22124 0.98014 0.99308 1.02523 0.88572 0.88621 0.87356 0.91423 0.90862 0.90987 0.91027 0.88882 0.88812 0.90706 0.90132 0.90000 0.88823 0.76578 0.89140 0.89109 0.92107 0.92273 0.91220 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.01 0.42 -0.68 16 2 C -0.15 -0.89 9.52 -36.02 -0.34 -1.24 16 3 C -0.10 -0.50 5.66 -27.88 -0.16 -0.65 16 4 C -0.10 -0.67 4.49 -26.73 -0.12 -0.79 16 5 C -0.14 -0.83 4.70 -27.88 -0.13 -0.96 16 6 C 0.53 5.15 7.64 -10.98 -0.08 5.07 16 7 O -0.54 -7.21 15.01 5.55 0.08 -7.12 16 8 N -0.62 -5.46 3.06 -162.87 -0.50 -5.96 16 9 C 0.10 0.66 6.71 -2.41 -0.02 0.65 16 10 C -0.15 -1.29 6.78 -24.46 -0.17 -1.45 16 11 C 0.14 1.51 2.84 -66.09 -0.19 1.32 16 12 H 0.11 1.35 7.27 -51.93 -0.38 0.97 16 13 N -0.73 -8.96 5.18 -52.03 -0.27 -9.23 16 14 C 0.54 9.34 7.85 -10.99 -0.09 9.25 16 15 O -0.51 -10.92 15.51 5.55 0.09 -10.83 16 16 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 22 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.13 1.29 3.20 -66.95 -0.21 1.07 16 27 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 28 C -0.16 -1.68 9.11 37.15 0.34 -1.34 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.10 0.47 7.84 -52.48 -0.41 0.06 16 31 H 0.11 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.07 0.31 7.79 -51.93 -0.40 -0.09 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.09 0.42 7.85 -51.92 -0.41 0.02 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.08 0.37 7.47 -51.93 -0.39 -0.02 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.40 3.92 8.37 -40.82 -0.34 3.58 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.84 6.87 -51.93 -0.36 0.48 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -35.04 410.27 -9.37 -44.42 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.12 Total: 0.58 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.33 Total: -5.31 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.03 Total: -40.32 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.04 -9.37 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756571813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.473 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds