Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.86892 * 2 1 4 4 C 1.54317 * 110.01410 * 238.89758 * 2 1 3 5 5 C 1.55160 * 102.94029 * 262.70357 * 4 2 1 6 6 H 1.09001 * 111.00393 * 82.61312 * 5 4 2 7 7 N 1.46501 * 110.99953 * 206.42138 * 5 4 2 8 8 C 1.34783 * 119.99779 * 204.99802 * 7 5 4 9 9 O 1.21283 * 119.99866 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99920 * 180.02562 * 8 7 5 11 11 S 1.81001 * 109.47172 * 180.02562 * 10 8 7 12 12 C 1.76196 * 99.99972 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00227 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99922 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00119 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00398 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47346 * 89.99591 * 16 14 12 18 18 H 1.48494 * 109.47214 * 210.00064 * 16 14 12 19 19 H 1.48504 * 109.46441 * 329.99645 * 16 14 12 20 20 C 1.55121 * 101.48580 * 324.33112 * 5 4 2 21 21 N 1.47026 * 109.88030 * 121.00750 * 2 1 3 22 22 C 1.34772 * 125.65239 * 300.59911 * 21 2 1 23 23 O 1.21282 * 120.00091 * 359.97438 * 22 21 2 24 24 C 1.50700 * 120.00241 * 180.02562 * 22 21 2 25 25 C 1.54891 * 110.75653 * 66.66679 * 24 22 21 26 26 C 1.54267 * 104.19324 * 156.25978 * 25 24 22 27 27 C 1.53876 * 106.59870 * 336.39035 * 26 25 24 28 28 C 1.54261 * 106.59990 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47327 * 298.98790 * 1 2 3 30 30 H 1.08995 * 109.47514 * 58.98987 * 1 2 3 31 31 H 1.09005 * 109.46998 * 178.98766 * 1 2 3 32 32 H 1.08998 * 110.71996 * 21.06719 * 4 2 1 33 33 H 1.08995 * 110.72236 * 144.16182 * 4 2 1 34 34 H 0.96999 * 120.00535 * 25.00317 * 7 5 4 35 35 H 1.08994 * 109.47120 * 300.00410 * 10 8 7 36 36 H 1.09004 * 109.46771 * 60.00322 * 10 8 7 37 37 H 0.96999 * 120.00521 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.49905 * 278.45109 * 20 5 4 39 39 H 1.09004 * 110.34577 * 156.06077 * 20 5 4 40 40 H 1.09005 * 110.81410 * 303.33683 * 24 22 21 41 41 H 1.09004 * 110.48613 * 37.58350 * 25 24 22 42 42 H 1.08994 * 110.48745 * 274.93768 * 25 24 22 43 43 H 1.08995 * 110.03032 * 217.10762 * 26 25 24 44 44 H 1.08998 * 110.03405 * 95.67701 * 26 25 24 45 45 H 1.08998 * 110.02768 * 119.28860 * 27 26 25 46 46 H 1.08994 * 110.03051 * 240.71540 * 27 26 25 47 47 H 1.09000 * 110.48928 * 142.28640 * 28 27 26 48 48 H 1.08999 * 110.48469 * 264.93049 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0581 -0.7490 -1.2415 5 6 2.3575 -2.1680 -0.6900 6 1 1.4522 -2.7744 -0.6595 7 7 3.4018 -2.8279 -1.4775 8 6 3.4670 -4.1735 -1.5172 9 8 2.6608 -4.8381 -0.9013 10 6 4.5416 -4.8523 -2.3268 11 16 4.3641 -6.6477 -2.1803 12 6 5.7071 -7.1716 -3.1934 13 1 6.3378 -6.4392 -3.6752 14 6 5.9545 -8.5256 -3.3721 15 7 5.1861 -9.4183 -2.7844 16 14 7.3787 -9.0812 -4.4456 17 1 8.6005 -9.2215 -3.6133 18 1 7.0497 -10.3894 -5.0664 19 1 7.6180 -8.0742 -5.5104 20 6 2.8643 -1.8432 0.7397 21 7 2.0299 -0.7123 1.1851 22 6 1.7728 -0.3826 2.4663 23 8 1.0743 0.5766 2.7172 24 6 2.3543 -1.2050 3.5873 25 6 3.8965 -1.0661 3.6271 26 6 4.2694 -1.4072 5.0847 27 6 3.0155 -1.1356 5.9343 28 6 1.9242 -0.6396 4.9634 29 1 -0.3634 0.4980 0.8990 30 1 -0.3634 0.5294 -0.8807 31 1 -0.3633 -1.0276 -0.0182 32 1 1.2962 -0.7906 -2.0199 33 1 2.9666 -0.2790 -1.6180 34 1 4.0464 -2.2964 -1.9704 35 1 4.4460 -4.5623 -3.3731 36 1 5.5211 -4.5521 -1.9546 37 1 5.3592 -10.3646 -2.9090 38 1 3.9148 -1.5532 0.7156 39 1 2.7218 -2.7014 1.3964 40 1 2.0630 -2.2510 3.4917 41 1 4.1940 -0.0456 3.3861 42 1 4.3610 -1.7725 2.9392 43 1 5.0908 -0.7731 5.4180 44 1 4.5525 -2.4570 5.1618 45 1 2.6902 -2.0536 6.4237 46 1 3.2285 -0.3697 6.6800 47 1 0.9498 -1.0344 5.2508 48 1 1.9030 0.4499 4.9378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756577837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -89.361431 kcal Electronic energy + Delta-G solvation = -27417.562484 eV Core-core repulsion = 23597.644999 eV Total energy + Delta-G solvation = -3819.917485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86004 -39.43007 -38.15535 -37.01872 -34.25323 -32.47223 -32.37723 -30.67459 -29.28763 -28.93120 -28.43114 -26.17552 -25.52994 -23.73639 -21.90209 -20.92398 -20.49223 -20.35610 -19.16773 -17.95297 -17.54519 -16.76150 -16.48850 -15.97755 -15.70859 -15.16482 -14.98730 -14.84223 -14.73849 -14.17475 -13.92155 -13.76464 -13.67373 -13.58011 -13.26501 -13.19328 -12.62438 -12.58848 -12.44028 -12.29304 -12.02562 -11.67373 -11.51343 -11.46537 -11.37805 -11.33810 -11.10328 -11.08682 -11.06735 -10.94530 -10.79349 -10.68335 -9.90572 -9.86382 -9.54034 -9.17032 -9.09879 -8.86571 -8.29820 -6.55546 -6.26125 -3.97227 2.41736 2.57107 2.92820 2.99263 3.19242 3.24730 3.28238 3.59786 4.05424 4.15972 4.21152 4.24248 4.30438 4.47145 4.61333 4.80613 4.86346 4.92636 5.05630 5.08142 5.09314 5.10078 5.12423 5.21228 5.27642 5.30746 5.37138 5.41031 5.42350 5.52168 5.54552 5.57101 5.66744 5.75511 5.78173 5.80134 5.84091 5.90382 5.94520 6.02827 6.06548 6.08491 6.17954 6.46239 7.25123 7.54077 7.55986 7.95691 8.30692 8.46600 9.19393 10.81249 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.002340 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.745224 B =11961.791718 C =13270.593835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.137 3.863 6 H 0.108 0.892 7 N -0.729 5.729 8 C 0.534 3.466 9 O -0.513 6.513 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.087 3.913 21 N -0.612 5.612 22 C 0.541 3.459 23 O -0.540 6.540 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.104 4.104 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.269 0.731 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 21.030 9.671 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.031 3.969 6 H 0.126 0.874 7 N -0.383 5.383 8 C 0.320 3.680 9 O -0.387 6.387 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.038 4.038 21 N -0.347 5.347 22 C 0.330 3.670 23 O -0.416 6.416 24 C -0.136 4.136 25 C -0.151 4.151 26 C -0.162 4.162 27 C -0.164 4.164 28 C -0.142 4.142 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.539 20.244 10.948 23.672 hybrid contribution 2.247 0.539 -1.744 2.895 sum -3.292 20.783 9.204 22.967 Atomic orbital electron populations 1.22170 0.94388 1.02639 1.03133 1.21494 0.95040 0.96219 0.83819 0.90471 1.23032 1.02695 0.94543 0.97214 1.21991 0.92513 0.93136 0.89308 0.87393 1.45912 1.33568 1.06818 1.52044 1.20400 0.85415 0.81302 0.80842 1.90716 1.40738 1.63839 1.43369 1.23535 0.99381 1.05645 1.01892 1.85411 1.42276 0.90051 1.65536 1.22855 1.16308 0.94646 1.34622 0.90904 1.24995 0.97067 0.95543 0.95966 1.70012 1.37290 1.01619 1.41333 0.86166 0.81223 0.78154 0.79955 1.20253 1.20738 1.19690 1.22881 0.95009 0.89224 0.96670 1.48501 1.50540 1.30623 1.05053 1.20222 0.79999 0.84704 0.82025 1.90669 1.38693 1.29072 1.83211 1.22319 0.97047 1.00456 0.93736 1.22358 0.92808 1.02163 0.97743 1.22124 0.97918 1.01893 0.94220 1.22158 0.94963 1.01243 0.97986 1.22219 0.98454 1.01734 0.91759 0.90929 0.91621 0.92244 0.88995 0.89863 0.76439 0.89100 0.89097 0.92139 0.90684 0.89685 0.87894 0.91327 0.90723 0.91563 0.91286 0.91589 0.91617 0.91260 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.09 37.16 0.34 -1.18 16 2 C 0.14 1.22 3.49 -66.96 -0.23 0.99 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.00 6.14 -24.90 -0.15 -1.16 16 5 C 0.14 1.38 3.44 -65.67 -0.23 1.16 16 6 H 0.11 1.33 7.54 -51.93 -0.39 0.94 16 7 N -0.73 -8.12 5.19 -51.62 -0.27 -8.39 16 8 C 0.53 8.89 7.85 -10.98 -0.09 8.80 16 9 O -0.51 -10.64 15.50 5.55 0.09 -10.55 16 10 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 11 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 12 C -0.54 -14.80 9.50 30.94 0.29 -14.51 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.62 13.22 55.49 0.73 -24.88 16 16 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.09 0.83 5.26 -2.41 -0.01 0.82 16 21 N -0.61 -6.15 3.08 -162.88 -0.50 -6.65 16 22 C 0.54 6.20 6.97 -10.99 -0.08 6.13 16 23 O -0.54 -7.71 14.59 5.56 0.08 -7.63 16 24 C -0.11 -1.08 2.53 -89.79 -0.23 -1.30 16 25 C -0.11 -0.93 5.74 -25.07 -0.14 -1.07 16 26 C -0.12 -0.92 6.80 -25.61 -0.17 -1.09 16 27 C -0.13 -0.94 6.80 -25.61 -0.17 -1.11 16 28 C -0.10 -0.94 5.91 -25.09 -0.15 -1.08 16 29 H 0.07 0.82 6.69 -51.93 -0.35 0.47 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.62 7.83 -51.93 -0.41 0.21 16 33 H 0.08 0.48 8.01 -51.93 -0.42 0.07 16 34 H 0.40 3.28 8.57 -40.82 -0.35 2.93 16 35 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 36 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 39 H 0.08 0.90 7.41 -51.93 -0.38 0.52 16 40 H 0.10 0.94 7.75 -51.93 -0.40 0.54 16 41 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 42 H 0.07 0.59 7.15 -51.93 -0.37 0.22 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.81 7.43 -51.93 -0.39 0.42 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -34.17 396.03 -10.09 -44.26 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.05 Total: 1.03 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.90 Total: -5.29 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.04 Total: -39.92 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.17 -10.09 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756577837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.102 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds