Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.87397 * 2 1 4 4 C 1.54331 * 109.87832 * 238.98943 * 2 1 3 5 5 C 1.55155 * 102.94111 * 218.38969 * 4 2 1 6 6 H 1.09001 * 111.00443 * 277.39085 * 5 4 2 7 7 N 1.46497 * 111.00529 * 153.57955 * 5 4 2 8 8 C 1.34778 * 120.00309 * 155.00439 * 7 5 4 9 9 O 1.21276 * 119.99491 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99778 * 180.02562 * 8 7 5 11 11 S 1.81004 * 109.46742 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99907 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99736 * 359.97438 * 12 11 10 14 14 C 1.38798 * 119.99832 * 180.27629 * 12 11 10 15 15 N 1.31631 * 119.99781 * 179.72124 * 14 12 11 16 16 Si 1.86800 * 119.99986 * 359.71904 * 14 12 11 17 17 H 1.48510 * 109.47082 * 90.00406 * 16 14 12 18 18 H 1.48504 * 109.47159 * 210.00067 * 16 14 12 19 19 H 1.48489 * 109.47333 * 330.00310 * 16 14 12 20 20 C 1.54910 * 101.58019 * 35.50443 * 5 4 2 21 21 N 1.47019 * 109.88149 * 121.18285 * 2 1 3 22 22 C 1.34772 * 125.64885 * 298.32995 * 21 2 1 23 23 O 1.21276 * 119.99927 * 0.02562 * 22 21 2 24 24 C 1.50701 * 119.99821 * 179.97438 * 22 21 2 25 25 C 1.54260 * 110.03527 * 297.91070 * 24 22 21 26 26 C 1.54969 * 104.16328 * 217.13636 * 25 24 22 27 27 C 1.54890 * 102.77385 * 37.88967 * 26 25 24 28 28 C 1.53884 * 110.03038 * 180.69331 * 24 22 21 29 29 H 1.08993 * 109.47533 * 179.55803 * 1 2 3 30 30 H 1.08995 * 109.47093 * 299.55972 * 1 2 3 31 31 H 1.09002 * 109.47103 * 59.55247 * 1 2 3 32 32 H 1.08999 * 110.71677 * 100.02966 * 4 2 1 33 33 H 1.08992 * 110.87172 * 336.82796 * 4 2 1 34 34 H 0.97005 * 119.99622 * 334.99639 * 7 5 4 35 35 H 1.09000 * 109.47396 * 59.99696 * 10 8 7 36 36 H 1.09001 * 109.47080 * 299.99119 * 10 8 7 37 37 H 0.97000 * 119.99427 * 179.97438 * 15 14 12 38 38 H 1.09001 * 110.36945 * 81.82985 * 20 5 4 39 39 H 1.09004 * 110.36533 * 204.15385 * 20 5 4 40 40 H 1.09000 * 110.01618 * 59.31089 * 24 22 21 41 41 H 1.09003 * 110.48846 * 335.78712 * 25 24 22 42 42 H 1.09004 * 110.48573 * 98.43167 * 25 24 22 43 43 H 1.08997 * 110.71925 * 279.58109 * 26 25 24 44 44 H 1.08997 * 110.92365 * 156.29339 * 26 25 24 45 45 H 1.08999 * 110.48429 * 203.40535 * 27 26 25 46 46 H 1.08996 * 110.48833 * 80.76475 * 27 26 25 47 47 H 1.08992 * 110.03166 * 238.56939 * 28 24 22 48 48 H 1.09002 * 110.03172 * 359.95689 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2439 5 6 3.2875 -1.5133 -0.6948 6 1 4.1655 -0.8681 -0.6625 7 7 3.5530 -2.7174 -1.4858 8 6 4.7963 -3.2360 -1.5271 9 8 5.6954 -2.7056 -0.9097 10 6 5.0695 -4.4744 -2.3414 11 16 6.8182 -4.9184 -2.1959 12 6 6.8549 -6.3549 -3.2157 13 1 5.9520 -6.6968 -3.6996 14 6 8.0430 -7.0505 -3.3920 15 7 8.0692 -8.1268 -4.1494 16 14 9.6046 -6.4594 -2.5545 17 1 9.7201 -7.0950 -1.2173 18 1 10.7808 -6.8300 -3.3819 19 1 9.5544 -4.9836 -2.3985 20 6 2.8144 -1.8806 0.7338 21 7 2.0300 -0.7158 1.1828 22 6 1.8084 -0.3651 2.4651 23 8 1.1448 0.6178 2.7188 24 6 2.3841 -1.1950 3.5835 25 6 1.8040 -2.6235 3.5342 26 6 1.6322 -3.0146 5.0239 27 6 1.1638 -1.6891 5.6741 28 6 1.9776 -0.6010 4.9437 29 1 -0.3634 -1.0275 -0.0079 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5208 -0.8860 32 1 2.3528 -0.0430 -2.0202 33 1 1.3063 -1.4433 -1.6233 34 1 2.8339 -3.1415 -1.9798 35 1 4.8296 -4.2819 -3.3871 36 1 4.4541 -5.2949 -1.9724 37 1 8.8996 -8.6127 -4.2729 38 1 2.1885 -2.7726 0.7086 39 1 3.6716 -2.0360 1.3891 40 1 3.4704 -1.2299 3.5011 41 1 0.8400 -2.6265 3.0256 42 1 2.4998 -3.3009 3.0391 43 1 2.5818 -3.3391 5.4494 44 1 0.8744 -3.7897 5.1379 45 1 1.3923 -1.6854 6.7399 46 1 0.0963 -1.5408 5.5114 47 1 2.8667 -0.3487 5.5215 48 1 1.3646 0.2879 4.7947 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756577839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -88.238675 kcal Electronic energy + Delta-G solvation = -27513.376801 eV Core-core repulsion = 23693.508002 eV Total energy + Delta-G solvation = -3819.868798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95360 -39.55579 -38.21485 -37.00278 -34.37448 -32.48546 -32.43127 -30.87936 -29.31336 -28.94294 -28.57692 -26.23466 -25.66211 -23.56933 -21.88284 -21.24098 -20.76817 -20.33435 -18.90386 -18.02440 -17.71913 -17.00031 -16.34381 -16.22340 -15.81634 -15.22076 -15.08805 -14.94308 -14.79342 -14.34766 -13.99349 -13.80775 -13.62738 -13.46491 -13.43748 -13.06562 -12.86396 -12.81709 -12.40972 -12.32850 -11.95248 -11.79824 -11.60990 -11.46197 -11.40575 -11.33411 -11.30962 -11.13071 -11.07720 -11.05006 -10.79454 -10.65725 -9.94936 -9.90482 -9.66962 -9.25317 -9.04612 -8.92850 -8.56632 -6.97804 -6.33418 -4.05868 2.37869 2.47645 2.74692 2.81041 3.22962 3.29669 3.46336 3.56465 4.01359 4.15549 4.21999 4.27700 4.28671 4.42031 4.55005 4.66050 4.75856 4.82181 4.85879 5.03311 5.05724 5.05734 5.13019 5.14009 5.20372 5.23376 5.29600 5.34057 5.35941 5.37579 5.48693 5.53763 5.63694 5.66089 5.67799 5.75492 5.79727 5.83572 5.88312 5.93391 6.00297 6.02722 6.13538 6.36423 7.20435 7.43647 7.89571 7.90855 8.33052 8.37067 9.12629 10.75775 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.002433 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.690449 B =11503.312748 C =12680.347501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.136 3.864 6 H 0.108 0.892 7 N -0.727 5.727 8 C 0.533 3.467 9 O -0.515 6.515 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.879 5.879 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.087 3.913 21 N -0.612 5.612 22 C 0.539 3.461 23 O -0.539 6.539 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.403 0.597 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.271 0.729 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.322 14.028 12.680 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 H 0.098 0.902 4 C -0.174 4.174 5 C 0.029 3.971 6 H 0.126 0.874 7 N -0.381 5.381 8 C 0.319 3.681 9 O -0.389 6.389 10 C -0.275 4.275 11 S 0.085 5.915 12 C -0.670 4.670 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.516 5.516 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.037 4.037 21 N -0.347 5.347 22 C 0.329 3.671 23 O -0.416 6.416 24 C -0.133 4.133 25 C -0.152 4.152 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.237 0.763 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.067 15.314 13.839 26.157 hybrid contribution -0.564 -0.983 -0.889 1.440 sum -16.631 14.331 12.949 25.488 Atomic orbital electron populations 1.22133 0.94413 1.02327 1.03098 1.21517 0.94880 0.96503 0.83807 0.90247 1.23052 0.97169 1.00029 0.97152 1.21965 0.98516 0.87249 0.89370 0.87401 1.45858 1.11323 1.29148 1.51757 1.20367 0.81727 0.85068 0.80908 1.90712 1.43861 1.60791 1.43529 1.23281 1.04520 0.97219 1.02510 1.84808 1.03633 1.36565 1.66453 1.22302 1.00286 1.10783 1.33605 0.89355 1.24718 0.98668 0.93820 0.94115 1.69937 1.28087 1.16719 1.36849 0.86737 0.82772 0.82197 0.80147 1.19191 1.19922 1.15935 1.22827 0.95650 0.88736 0.96498 1.48458 1.52644 1.28541 1.05035 1.20283 0.79846 0.84862 0.82154 1.90648 1.40242 1.27824 1.82849 1.21948 1.01721 0.95652 0.93979 1.22391 1.01164 0.93821 0.97808 1.22519 1.01595 0.97428 0.94644 1.22359 0.99932 0.94411 0.99409 1.22170 1.00730 0.99720 0.93022 0.92482 0.91107 0.91568 0.89093 0.89630 0.76258 0.88319 0.88366 0.91898 0.90680 0.89695 0.88285 0.91348 0.90610 0.91064 0.91271 0.91482 0.91638 0.91382 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.12 37.16 0.34 -0.95 16 2 C 0.14 1.15 3.46 -66.95 -0.23 0.92 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.14 -0.93 6.12 -24.89 -0.15 -1.08 16 5 C 0.14 1.27 3.42 -65.78 -0.23 1.05 16 6 H 0.11 1.24 7.54 -51.93 -0.39 0.85 16 7 N -0.73 -7.54 5.20 -51.73 -0.27 -7.80 16 8 C 0.53 8.32 7.85 -10.99 -0.09 8.23 16 9 O -0.52 -10.03 15.50 5.56 0.09 -9.94 16 10 C -0.12 -2.20 6.16 36.01 0.22 -1.98 16 11 S -0.14 -3.40 18.55 -107.50 -1.99 -5.40 16 12 C -0.52 -14.57 10.04 30.94 0.31 -14.25 16 13 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 14 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 15 N -0.88 -26.02 13.97 55.49 0.78 -25.25 16 16 Si 0.86 21.26 27.73 -169.99 -4.71 16.55 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.24 -5.82 6.74 56.52 0.38 -5.43 16 20 C 0.09 0.79 5.12 -2.53 -0.01 0.78 16 21 N -0.61 -5.86 3.06 -163.01 -0.50 -6.36 16 22 C 0.54 5.97 6.85 -10.99 -0.08 5.90 16 23 O -0.54 -7.50 14.24 5.56 0.08 -7.42 16 24 C -0.11 -1.01 2.60 -90.65 -0.24 -1.25 16 25 C -0.11 -0.90 5.31 -25.03 -0.13 -1.03 16 26 C -0.12 -0.89 6.91 -24.69 -0.17 -1.06 16 27 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 28 C -0.12 -1.04 6.40 -25.61 -0.16 -1.20 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.72 6.86 -51.93 -0.36 0.37 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.47 7.71 -51.93 -0.40 0.07 16 34 H 0.40 3.03 8.57 -40.82 -0.35 2.68 16 35 H 0.10 1.62 8.14 -51.92 -0.42 1.19 16 36 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.08 0.84 7.44 -51.93 -0.39 0.46 16 40 H 0.10 0.86 7.83 -51.93 -0.41 0.45 16 41 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 42 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.94 6.39 -51.93 -0.33 0.61 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -33.87 392.78 -9.58 -43.45 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.08 Total: 0.65 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.88 Total: -4.39 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.01 Total: -39.42 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.17 Total: -17.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.87 -9.58 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756577839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.793 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds