Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.69829 * 2 1 4 4 C 1.53193 * 109.58573 * 239.64664 * 2 1 3 5 5 C 1.53042 * 109.31005 * 185.57426 * 4 2 1 6 6 C 1.53043 * 109.53555 * 61.37139 * 5 4 2 7 7 H 1.08999 * 109.52668 * 58.59681 * 6 5 4 8 8 N 1.46501 * 109.49831 * 178.68102 * 6 5 4 9 9 C 1.34773 * 119.99995 * 274.83569 * 8 6 5 10 10 O 1.21282 * 120.00202 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00179 * 179.97438 * 9 8 6 12 12 S 1.81001 * 109.47330 * 179.97438 * 11 9 8 13 13 C 1.76195 * 100.00059 * 179.97438 * 12 11 9 14 14 H 1.08011 * 120.00089 * 0.02562 * 13 12 11 15 15 C 1.38796 * 120.00209 * 179.97438 * 13 12 11 16 16 N 1.31633 * 120.00096 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99778 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47212 * 90.00029 * 17 15 13 19 19 H 1.48502 * 109.46978 * 210.00057 * 17 15 13 20 20 H 1.48499 * 109.47264 * 329.99929 * 17 15 13 21 21 C 1.53201 * 109.30934 * 298.63050 * 6 5 4 22 22 N 1.46920 * 108.77494 * 54.63709 * 21 6 5 23 23 C 1.34780 * 120.63171 * 126.41115 * 22 21 6 24 24 O 1.21277 * 119.99976 * 174.20864 * 23 22 21 25 25 C 1.50694 * 119.99782 * 354.21504 * 23 22 21 26 26 C 1.53000 * 109.47166 * 179.97438 * 25 23 22 27 27 C 1.53003 * 117.49764 * 243.62151 * 26 25 23 28 28 C 1.52995 * 60.00071 * 252.50715 * 27 26 25 29 29 H 1.09000 * 109.47540 * 305.44462 * 1 2 3 30 30 H 1.09008 * 109.47243 * 65.44198 * 1 2 3 31 31 H 1.09000 * 109.47044 * 185.44087 * 1 2 3 32 32 H 1.08994 * 109.49857 * 305.52972 * 4 2 1 33 33 H 1.09002 * 109.49746 * 65.62835 * 4 2 1 34 34 H 1.08997 * 109.46371 * 301.34391 * 5 4 2 35 35 H 1.09005 * 109.46028 * 181.38160 * 5 4 2 36 36 H 0.96997 * 119.99714 * 94.83009 * 8 6 5 37 37 H 1.09003 * 109.46785 * 60.00004 * 11 9 8 38 38 H 1.08998 * 109.47203 * 300.00368 * 11 9 8 39 39 H 0.97002 * 119.99527 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.58445 * 174.42458 * 21 6 5 41 41 H 1.08994 * 109.58389 * 294.84937 * 21 6 5 42 42 H 1.08999 * 109.47148 * 299.99666 * 25 23 22 43 43 H 1.09004 * 109.47131 * 59.99769 * 25 23 22 44 44 H 1.09000 * 115.54957 * 29.32140 * 26 25 23 45 45 H 1.09005 * 117.49941 * 359.97438 * 27 26 25 46 46 H 1.08999 * 117.50263 * 145.01980 * 27 26 25 47 47 H 1.09002 * 117.50428 * 252.51169 * 28 27 26 48 48 H 1.08999 * 117.49855 * 107.48743 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1702 6 6 3.9569 -1.6657 0.0634 7 1 3.4987 -2.6530 0.0054 8 7 5.4142 -1.8053 0.1174 9 6 6.0222 -2.7947 -0.5665 10 8 5.3630 -3.5693 -1.2271 11 6 7.5214 -2.9380 -0.5114 12 16 8.0303 -4.3488 -1.5248 13 6 9.7748 -4.2836 -1.2859 14 1 10.2057 -3.5175 -0.6582 15 6 10.5953 -5.2174 -1.9034 16 7 11.8985 -5.1690 -1.7245 17 14 9.8500 -6.5428 -2.9884 18 1 9.7739 -6.0521 -4.3879 19 1 10.6987 -7.7603 -2.9362 20 1 8.4850 -6.8699 -2.5036 21 6 3.4650 -0.9470 1.3237 22 7 2.0225 -0.6996 1.1944 23 6 1.1674 -1.1063 2.1535 24 8 -0.0056 -0.8052 2.0875 25 6 1.6688 -1.9351 3.3079 26 6 0.5047 -2.2597 4.2462 27 6 0.5676 -1.7013 5.6693 28 6 0.7860 -3.1955 5.4235 29 1 -0.3634 0.5959 0.8372 30 1 -0.3634 0.4271 -0.9348 31 1 -0.3633 -1.0230 0.0974 32 1 1.6030 -1.7252 -1.2914 33 1 1.7660 -0.1667 -2.1368 34 1 4.0061 0.1475 -1.0994 35 1 3.9378 -1.3447 -2.0669 36 1 5.9415 -1.1856 0.6454 37 1 7.8331 -3.1010 0.5203 38 1 7.9875 -2.0294 -0.8925 39 1 12.4718 -5.8214 -2.1564 40 1 3.6518 -1.5718 2.1971 41 1 3.9902 0.0019 1.4317 42 1 2.1001 -2.8618 2.9295 43 1 2.4295 -1.3762 3.8531 44 1 -0.4755 -2.3255 3.7740 45 1 1.4385 -1.1030 5.9372 46 1 -0.3713 -1.3996 6.1336 47 1 -0.0092 -3.8769 5.7260 48 1 1.8004 -3.5800 5.5295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756795672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -44.030183 kcal Electronic energy + Delta-G solvation = -27341.521548 eV Core-core repulsion = 23523.569774 eV Total energy + Delta-G solvation = -3817.951774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05470 -39.53215 -38.02178 -37.09800 -34.69974 -33.57117 -32.47666 -31.70958 -29.77166 -29.06407 -27.17211 -25.65429 -24.74560 -22.90290 -22.69769 -21.70996 -20.64744 -20.58143 -19.24510 -17.99158 -17.33391 -16.85739 -16.38961 -16.16894 -15.79408 -15.35432 -15.20275 -14.99670 -14.58499 -14.47106 -14.23552 -13.92622 -13.85340 -13.65155 -13.42046 -12.92943 -12.82288 -12.78379 -12.56035 -12.36893 -12.16971 -11.86020 -11.78733 -11.38135 -11.36040 -11.30847 -11.24053 -11.15777 -11.04107 -10.68180 -10.65393 -10.35186 -9.89984 -9.63857 -9.36349 -9.20165 -9.03820 -8.87568 -8.54962 -6.96523 -6.32616 -4.04841 2.28325 2.42657 2.76015 2.87135 3.25600 3.30714 3.45811 3.47273 3.59432 4.11106 4.29382 4.29919 4.33454 4.40650 4.53669 4.57411 4.65418 4.69146 4.77922 4.84086 4.90887 5.03181 5.06455 5.07719 5.16008 5.21597 5.28343 5.29689 5.31092 5.33367 5.48694 5.55902 5.56121 5.68455 5.69826 5.77430 5.85659 5.92441 5.94483 5.95299 6.03273 6.05666 6.33631 6.43978 7.03198 7.48287 7.87771 7.90368 8.37556 8.38777 9.13511 10.76549 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.002301 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.422441 B =12167.784545 C =13279.092194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.142 3.858 3 H 0.072 0.928 4 C -0.129 4.129 5 C -0.132 4.132 6 C 0.134 3.866 7 H 0.093 0.907 8 N -0.733 5.733 9 C 0.534 3.466 10 O -0.515 6.515 11 C -0.124 4.124 12 S -0.141 6.141 13 C -0.522 4.522 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.101 3.899 22 N -0.608 5.608 23 C 0.522 3.478 24 O -0.528 6.528 25 C -0.115 4.115 26 C -0.140 4.140 27 C -0.179 4.179 28 C -0.180 4.180 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.617 12.208 10.961 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.171 4.171 6 C 0.027 3.973 7 H 0.111 0.889 8 N -0.387 5.387 9 C 0.320 3.680 10 O -0.389 6.389 11 C -0.275 4.275 12 S 0.085 5.915 13 C -0.670 4.670 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.516 5.516 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.023 4.023 22 N -0.343 5.343 23 C 0.311 3.689 24 O -0.405 6.405 25 C -0.155 4.155 26 C -0.159 4.159 27 C -0.215 4.215 28 C -0.217 4.217 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.136 0.864 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.169 10.985 9.790 27.447 hybrid contribution 1.351 0.599 0.464 1.549 sum -21.818 11.585 10.254 26.747 Atomic orbital electron populations 1.22198 0.92405 1.03748 1.01159 1.21364 0.95912 0.95106 0.83679 0.90954 1.21996 0.95506 1.01735 0.97501 1.21952 0.95575 1.00489 0.99060 1.21193 0.81174 1.00531 0.94358 0.88864 1.45926 1.06690 1.33525 1.52589 1.20299 0.89834 0.79602 0.78312 1.90712 1.66252 1.42185 1.39770 1.23281 0.93367 1.05164 1.05686 1.84814 1.08095 1.35219 1.63366 1.22306 0.88603 1.19775 1.36271 0.89368 1.24717 0.94193 0.96953 0.95463 1.69939 1.02938 1.36038 1.42702 0.86737 0.81562 0.81707 0.81851 1.19207 1.19923 1.15926 1.21942 0.80854 1.00955 0.98504 1.48074 1.06716 1.58460 1.21008 1.20550 0.85899 0.79519 0.82962 1.90733 1.17120 1.56158 1.76442 1.21339 0.98546 1.00627 0.94985 1.22048 0.99960 1.04542 0.89325 1.23030 1.03210 0.96429 0.98878 1.23013 1.03033 0.93118 1.02556 0.90299 0.93651 0.91682 0.91096 0.90255 0.91504 0.90452 0.76603 0.88398 0.88440 0.91910 0.88888 0.90492 0.88280 0.88829 0.86418 0.88885 0.88797 0.88632 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.61 37.16 0.28 -1.01 16 2 C 0.14 1.19 3.49 -67.60 -0.24 0.95 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.10 5.37 -26.61 -0.14 -1.24 16 5 C -0.13 -1.25 5.46 -26.69 -0.15 -1.40 16 6 C 0.13 1.28 2.61 -67.80 -0.18 1.10 16 7 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 8 N -0.73 -7.78 5.08 -53.68 -0.27 -8.05 16 9 C 0.53 8.56 7.81 -10.99 -0.09 8.47 16 10 O -0.52 -10.34 15.52 5.56 0.09 -10.25 16 11 C -0.12 -2.23 6.16 36.00 0.22 -2.01 16 12 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 13 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 14 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 15 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 16 N -0.88 -26.14 13.97 55.49 0.78 -25.37 16 17 Si 0.86 21.43 27.74 -169.99 -4.72 16.71 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 21 C 0.10 0.69 5.82 -3.71 -0.02 0.67 16 22 N -0.61 -5.06 2.97 -165.22 -0.49 -5.55 16 23 C 0.52 4.95 7.50 -10.99 -0.08 4.87 16 24 O -0.53 -6.39 11.13 5.56 0.06 -6.33 16 25 C -0.12 -0.84 4.34 -27.89 -0.12 -0.96 16 26 C -0.14 -1.12 5.41 -90.62 -0.49 -1.61 16 27 C -0.18 -1.23 10.18 -26.73 -0.27 -1.51 16 28 C -0.18 -1.22 10.25 -26.73 -0.27 -1.49 16 29 H 0.08 0.85 6.54 -51.93 -0.34 0.51 16 30 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.72 6.96 -51.93 -0.36 0.36 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.40 3.00 8.60 -40.82 -0.35 2.65 16 37 H 0.10 1.62 8.14 -51.91 -0.42 1.19 16 38 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.67 7.93 -51.93 -0.41 0.26 16 43 H 0.09 0.52 7.44 -51.93 -0.39 0.14 16 44 H 0.12 1.13 7.30 -51.93 -0.38 0.75 16 45 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -34.04 393.82 -9.94 -43.99 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.00 Total: 1.23 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.33 Total: -6.86 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.01 Total: -38.97 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.15 Total: -16.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.72 Total: 16.71 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.04 -9.94 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756795672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.044 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds