Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50690 * 119.99989 * 2 1 4 4 C 1.32996 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99953 * 352.28069 * 4 2 1 6 6 O 1.21608 * 120.00282 * 0.36443 * 5 4 2 7 7 N 1.34783 * 119.99566 * 180.35894 * 5 4 2 8 8 C 1.46920 * 120.63311 * 355.47171 * 7 5 4 9 9 C 1.53193 * 108.77844 * 126.36663 * 8 7 5 10 10 H 1.09004 * 109.49875 * 294.65654 * 9 8 7 11 11 N 1.46497 * 109.50212 * 174.58663 * 9 8 7 12 12 C 1.34777 * 120.00126 * 84.72497 * 11 9 8 13 13 O 1.21285 * 119.99559 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00360 * 180.02562 * 12 11 9 15 15 S 1.80995 * 109.47393 * 179.97438 * 14 12 11 16 16 C 1.76191 * 100.00057 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00225 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99976 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47371 * 60.00270 * 20 18 16 22 22 H 1.48507 * 109.46855 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47464 * 300.00020 * 20 18 16 24 24 C 1.53045 * 109.31191 * 54.63325 * 9 8 7 25 25 C 1.53041 * 109.53843 * 298.63943 * 24 9 8 26 26 C 1.46924 * 120.62757 * 175.44716 * 7 5 4 27 27 H 1.08999 * 109.59003 * 113.70377 * 26 7 5 28 28 C 1.53000 * 109.58950 * 353.41914 * 26 7 5 29 29 H 1.09005 * 109.47501 * 263.77057 * 1 2 3 30 30 H 1.08999 * 109.47565 * 23.77374 * 1 2 3 31 31 H 1.08999 * 109.47465 * 143.77890 * 1 2 3 32 32 H 1.09000 * 109.47247 * 270.00075 * 3 2 1 33 33 H 1.08998 * 109.47461 * 29.99823 * 3 2 1 34 34 H 1.09005 * 109.47311 * 150.00135 * 3 2 1 35 35 H 1.08000 * 120.00048 * 172.27598 * 4 2 1 36 36 H 1.08999 * 109.58601 * 6.57823 * 8 7 5 37 37 H 1.08995 * 109.58793 * 246.15363 * 8 7 5 38 38 H 0.96996 * 119.99847 * 265.00701 * 11 9 8 39 39 H 1.08998 * 109.46979 * 300.00097 * 14 12 11 40 40 H 1.09009 * 109.46561 * 59.99792 * 14 12 11 41 41 H 0.96998 * 119.99986 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.45922 * 58.65457 * 24 9 8 43 43 H 1.08993 * 109.46205 * 178.61492 * 24 9 8 44 44 H 1.08998 * 109.49874 * 301.41066 * 25 24 9 45 45 H 1.08996 * 109.49694 * 181.31411 * 25 24 9 46 46 H 1.09000 * 109.46933 * 67.82722 * 28 26 7 47 47 H 1.09000 * 109.47155 * 187.83200 * 28 26 7 48 48 H 1.08998 * 109.46958 * 307.83300 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4464 -2.4199 0.1722 6 8 0.2378 -2.4155 0.3070 7 7 2.1211 -3.5866 0.1800 8 6 3.5668 -3.6171 -0.0803 9 6 4.2596 -4.3539 1.0703 10 1 4.1439 -3.7816 1.9908 11 7 5.6843 -4.5071 0.7655 12 6 6.5454 -3.5101 1.0503 13 8 6.1408 -2.4863 1.5593 14 6 8.0109 -3.6675 0.7362 15 16 8.8983 -2.1698 1.2314 16 6 10.5371 -2.6162 0.7630 17 1 10.7272 -3.5808 0.3161 18 6 11.5840 -1.7284 0.9693 19 7 11.3526 -0.5534 1.5153 20 14 13.3216 -2.2020 0.4733 21 1 13.3634 -2.4729 -0.9861 22 1 14.2496 -1.0888 0.7974 23 1 13.7333 -3.4208 1.2150 24 6 3.6228 -5.7348 1.2433 25 6 2.1417 -5.5751 1.5941 26 6 1.4250 -4.8521 0.4494 27 1 1.4398 -5.4750 -0.4450 28 6 -0.0233 -4.5655 0.8509 29 1 -0.3634 -0.1115 1.0216 30 1 -0.3634 0.9404 -0.4143 31 1 -0.3634 -0.8290 -0.6072 32 1 2.4421 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1747 0.5138 35 1 3.2446 -1.1562 -0.1252 36 1 3.9481 -2.5980 -0.1439 37 1 3.7585 -4.1402 -1.0171 38 1 6.0072 -5.3244 0.3550 39 1 8.4094 -4.5233 1.2811 40 1 8.1378 -3.8274 -0.3346 41 1 12.0843 0.0668 1.6598 42 1 3.7174 -6.2972 0.3144 43 1 4.1303 -6.2707 2.0453 44 1 2.0456 -4.9916 2.5097 45 1 1.6944 -6.5583 1.7401 46 1 -0.5658 -4.1668 -0.0063 47 1 -0.4975 -5.4888 1.1837 48 1 -0.0382 -3.8367 1.6613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756796367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -48.282477 kcal Electronic energy + Delta-G solvation = -27672.646150 eV Core-core repulsion = 23854.509983 eV Total energy + Delta-G solvation = -3818.136167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87150 -39.36989 -37.71601 -35.64260 -34.45147 -33.27418 -32.46071 -31.54868 -29.19426 -28.10461 -27.80900 -26.82690 -25.51485 -24.73939 -22.78646 -21.47402 -20.45683 -19.80667 -18.16579 -17.88733 -17.20247 -16.45299 -16.33253 -15.76248 -15.43525 -15.02432 -14.83229 -14.54336 -14.29007 -14.24475 -14.10947 -13.97670 -13.75074 -13.25314 -13.18645 -12.90979 -12.71199 -12.57297 -12.41676 -12.32428 -12.21681 -12.04214 -11.70813 -11.61052 -11.39346 -11.26424 -11.19605 -11.07841 -11.06404 -10.84058 -10.75751 -9.85830 -9.51493 -9.32004 -9.14471 -9.08413 -8.91726 -8.54687 -8.28410 -6.53819 -6.24751 -3.95639 1.29601 2.68885 2.98617 3.06384 3.21150 3.21609 3.25642 3.29166 3.65685 4.17493 4.38827 4.44518 4.53176 4.64791 4.76138 4.79504 4.95720 5.02604 5.09719 5.10576 5.12736 5.25732 5.33456 5.36106 5.40448 5.45177 5.49394 5.57065 5.59067 5.65047 5.72706 5.73701 5.75246 5.83042 5.84577 5.94309 6.00470 6.07657 6.09293 6.21383 6.40847 6.46752 6.50598 6.58492 7.31334 7.56141 7.61839 8.15778 8.31803 8.52074 9.20622 10.82586 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.002580 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.972464 B =10848.065600 C =12526.109891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.028 4.028 3 C -0.131 4.131 4 C -0.244 4.244 5 C 0.554 3.446 6 O -0.537 6.537 7 N -0.605 5.605 8 C 0.095 3.905 9 C 0.134 3.866 10 H 0.093 0.907 11 N -0.733 5.733 12 C 0.533 3.467 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.127 4.127 25 C -0.127 4.127 26 C 0.142 3.858 27 H 0.070 0.930 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.993 -8.411 -4.122 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.187 4.187 4 C -0.265 4.265 5 C 0.347 3.653 6 O -0.418 6.418 7 N -0.338 5.338 8 C -0.030 4.030 9 C 0.027 3.973 10 H 0.111 0.889 11 N -0.388 5.388 12 C 0.319 3.681 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.165 4.165 25 C -0.166 4.166 26 C 0.039 3.961 27 H 0.088 0.912 28 C -0.192 4.192 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.060 0.940 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.214 -6.523 -3.125 23.362 hybrid contribution 2.166 -1.989 -1.113 3.144 sum -20.049 -8.511 -4.238 22.189 Atomic orbital electron populations 1.21199 0.91064 1.02395 1.03475 1.22590 0.96675 0.94602 0.89168 1.21046 1.00571 0.94151 1.02981 1.22579 1.00826 0.92005 1.11073 1.18526 0.86839 0.83833 0.76124 1.90765 1.13818 1.86797 1.50429 1.47966 1.08464 1.06502 1.70879 1.22265 0.79319 1.03413 0.97965 1.21186 0.80395 0.96777 0.98901 0.88919 1.46023 1.06806 1.20059 1.65888 1.20379 0.87775 0.82812 0.77144 1.90710 1.78893 1.27867 1.41339 1.23540 0.94123 1.07894 1.04924 1.85382 1.02388 1.14322 1.81122 1.22822 0.92836 1.05122 1.47728 0.90979 1.24987 0.99357 0.94488 0.94698 1.69999 1.32877 1.06897 1.40497 0.86230 0.82070 0.78197 0.79043 1.19931 1.20800 1.19940 1.21814 0.95883 0.96130 1.02704 1.21980 0.94550 1.01156 0.98941 1.21296 0.93067 0.84391 0.97329 0.91180 1.22178 0.93360 0.99953 1.03708 0.90574 0.92873 0.88945 0.90406 0.90950 0.90500 0.85138 0.88373 0.91176 0.76622 0.89186 0.89161 0.92100 0.91152 0.90645 0.91039 0.90200 0.90646 0.94028 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.49 36.01 0.31 -1.00 16 2 C -0.03 -0.32 6.11 -101.17 -0.62 -0.93 16 3 C -0.13 -1.23 10.01 36.00 0.36 -0.87 16 4 C -0.24 -3.00 8.95 -37.80 -0.34 -3.34 16 5 C 0.55 7.03 7.38 -12.66 -0.09 6.94 16 6 O -0.54 -7.33 8.69 5.27 0.05 -7.28 16 7 N -0.60 -6.67 2.97 -166.61 -0.50 -7.17 16 8 C 0.09 1.03 5.92 -3.71 -0.02 1.01 16 9 C 0.13 1.46 2.60 -67.81 -0.18 1.29 16 10 H 0.09 1.27 7.59 -51.93 -0.39 0.88 16 11 N -0.73 -8.70 5.08 -53.69 -0.27 -8.98 16 12 C 0.53 9.14 7.81 -10.99 -0.09 9.05 16 13 O -0.51 -10.82 15.53 5.55 0.09 -10.74 16 14 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 16 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 17 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 20 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.13 -1.01 5.35 -26.69 -0.14 -1.15 16 25 C -0.13 -1.01 5.37 -26.61 -0.14 -1.15 16 26 C 0.14 1.31 3.49 -67.60 -0.24 1.08 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 C -0.13 -1.34 7.61 37.16 0.28 -1.06 16 29 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.09 1.09 6.03 -51.93 -0.31 0.77 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.13 1.64 5.85 -52.49 -0.31 1.33 16 36 H 0.10 1.24 5.30 -51.93 -0.28 0.96 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 3.56 8.60 -40.82 -0.35 3.21 16 39 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 40 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.86 6.72 -51.93 -0.35 0.51 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -33.37 393.93 -9.48 -42.85 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.79 Total: 3.63 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.49 Total: -5.51 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.03 Total: -41.15 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.13 Total: -18.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.37 -9.48 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756796367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.434 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds