Wall clock time and date at job start Sat Apr 11 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50696 * 119.99645 * 2 1 4 4 C 1.32996 * 120.00476 * 180.02562 * 2 1 3 5 5 C 1.47107 * 119.99681 * 359.97438 * 4 2 1 6 6 O 1.21611 * 119.99777 * 5.61947 * 5 4 2 7 7 N 1.34772 * 119.99657 * 185.62176 * 5 4 2 8 8 C 1.46924 * 120.63301 * 5.01551 * 7 5 4 9 9 C 1.53193 * 108.77080 * 126.41672 * 8 7 5 10 10 H 1.09006 * 109.49850 * 174.61960 * 9 8 7 11 11 N 1.46497 * 109.49986 * 294.68311 * 9 8 7 12 12 C 1.34772 * 120.00122 * 275.00123 * 11 9 8 13 13 O 1.21278 * 120.00019 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99649 * 180.02562 * 12 11 9 15 15 S 1.81008 * 109.46922 * 180.02562 * 14 12 11 16 16 C 1.76194 * 99.99994 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00034 * 179.97438 * 16 15 14 19 19 N 1.31630 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47094 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47308 * 120.00439 * 20 18 16 23 23 H 1.48502 * 109.47057 * 239.99918 * 20 18 16 24 24 C 1.53045 * 109.31353 * 54.63972 * 9 8 7 25 25 C 1.53031 * 109.53520 * 298.63285 * 24 9 8 26 26 C 1.46928 * 120.62719 * 185.05008 * 7 5 4 27 27 H 1.08999 * 109.58862 * 113.79443 * 26 7 5 28 28 C 1.52999 * 109.58513 * 353.50614 * 26 7 5 29 29 H 1.09005 * 109.46741 * 239.99658 * 1 2 3 30 30 H 1.08995 * 109.47215 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46642 * 120.00274 * 1 2 3 32 32 H 1.09003 * 109.47694 * 269.99971 * 3 2 1 33 33 H 1.09000 * 109.47482 * 30.00485 * 3 2 1 34 34 H 1.09007 * 109.47503 * 149.99863 * 3 2 1 35 35 H 1.07992 * 120.00039 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.59020 * 246.20344 * 8 7 5 37 37 H 1.08996 * 109.58499 * 6.48977 * 8 7 5 38 38 H 0.97004 * 119.99361 * 95.00143 * 11 9 8 39 39 H 1.08998 * 109.47161 * 299.99942 * 14 12 11 40 40 H 1.08999 * 109.47447 * 60.00350 * 14 12 11 41 41 H 0.97000 * 120.00197 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.46103 * 58.65153 * 24 9 8 43 43 H 1.08995 * 109.45913 * 178.62326 * 24 9 8 44 44 H 1.09003 * 109.49840 * 301.41196 * 25 24 9 45 45 H 1.08997 * 109.50086 * 181.31804 * 25 24 9 46 46 H 1.08996 * 109.46888 * 63.31356 * 28 26 7 47 47 H 1.09005 * 109.47032 * 183.31188 * 28 26 7 48 48 H 1.08994 * 109.47389 * 303.30771 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1721 -1.1517 -0.0005 5 6 1.4366 -2.4257 -0.0005 6 8 0.2248 -2.4282 -0.1032 7 7 2.1057 -3.5900 0.1133 8 6 3.5561 -3.6001 0.3479 9 6 3.8499 -4.4590 1.5820 10 1 4.9281 -4.5533 1.7113 11 7 3.2687 -3.8256 2.7682 12 6 3.9559 -2.8725 3.4282 13 8 5.0556 -2.5394 3.0403 14 6 3.3581 -2.2214 4.6488 15 16 4.5140 -0.9922 5.3041 16 6 3.5874 -0.4054 6.6830 17 1 2.6103 -0.8158 6.8911 18 6 4.1135 0.5837 7.5024 19 7 5.3045 1.0836 7.2491 20 14 3.1314 1.2054 8.9647 21 1 1.8331 0.4876 9.0302 22 1 3.8960 0.9617 10.2142 23 1 2.8842 2.6617 8.8119 24 6 3.2345 -5.8472 1.3907 25 6 1.7168 -5.7181 1.2422 26 6 1.3988 -4.8734 0.0044 27 1 1.7305 -5.3985 -0.8914 28 6 -0.1085 -4.6234 -0.0762 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 2.4421 1.6199 -1.0277 33 1 1.6714 2.0647 0.5139 34 1 3.2129 1.1749 0.5139 35 1 3.2520 -1.1516 -0.0001 36 1 4.0638 -4.0214 -0.5198 37 1 3.9059 -2.5818 0.5172 38 1 2.3892 -4.0924 3.0786 39 1 2.4226 -1.7319 4.3782 40 1 3.1651 -2.9798 5.4075 41 1 5.6724 1.7746 7.8220 42 1 3.6491 -6.3078 0.4940 43 1 3.4629 -6.4681 2.2568 44 1 1.3044 -5.2350 2.1281 45 1 1.2767 -6.7088 1.1295 46 1 -0.3358 -4.0629 -0.9829 47 1 -0.6345 -5.5779 -0.0977 48 1 -0.4290 -4.0516 0.7946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756796368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:33 Heat of formation + Delta-G solvation = -68.935950 kcal Electronic energy + Delta-G solvation = -28615.269279 eV Core-core repulsion = 24796.237510 eV Total energy + Delta-G solvation = -3819.031769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85696 -40.52807 -38.67596 -36.53838 -35.25408 -34.59307 -34.02397 -32.65887 -30.37743 -29.09954 -28.65873 -27.94261 -27.62303 -25.55769 -23.58092 -22.45428 -21.78093 -20.36038 -19.87874 -18.96113 -18.17505 -17.65289 -17.36042 -16.89171 -16.75052 -16.45884 -16.19283 -15.79449 -15.41030 -15.25726 -14.93998 -14.86436 -14.81078 -14.58911 -14.12248 -14.05166 -13.88768 -13.54048 -13.44251 -13.22205 -13.18692 -13.16843 -13.01748 -12.92615 -12.64389 -12.56221 -12.44615 -12.37220 -11.94727 -11.83646 -11.72322 -11.51376 -11.16616 -10.92298 -10.32301 -10.29175 -10.10342 -9.86011 -9.33456 -8.65810 -8.35914 -6.12793 0.41557 1.26199 1.39476 1.45515 1.57031 1.61646 2.01690 2.25002 2.31398 2.33194 2.98295 3.30884 3.55705 3.65228 3.83330 3.88443 3.92429 3.96528 4.02612 4.16109 4.25236 4.35917 4.38957 4.45544 4.47363 4.53675 4.64608 4.65107 4.68971 4.77575 4.86034 4.87941 4.89205 4.93663 5.03185 5.11178 5.14408 5.15927 5.34988 5.39079 5.40949 5.52145 5.53271 5.61522 5.79121 6.18807 6.42076 6.48821 7.05982 7.22970 7.28187 8.73346 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003481 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.905317 B = 8041.177781 C = 9252.747997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.031 4.031 3 C -0.128 4.128 4 C -0.261 4.261 5 C 0.546 3.454 6 O -0.557 6.557 7 N -0.601 5.601 8 C 0.095 3.905 9 C 0.129 3.871 10 H 0.093 0.907 11 N -0.706 5.706 12 C 0.539 3.461 13 O -0.556 6.556 14 C -0.133 4.133 15 S -0.135 6.135 16 C -0.549 4.549 17 H 0.077 0.923 18 C 0.018 3.982 19 N -0.908 5.908 20 Si 0.994 3.006 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.273 1.273 24 C -0.116 4.116 25 C -0.128 4.128 26 C 0.140 3.860 27 H 0.090 0.910 28 C -0.125 4.125 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.272 0.728 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 -13.343 -17.710 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.033 4.033 3 C -0.185 4.185 4 C -0.281 4.281 5 C 0.338 3.662 6 O -0.439 6.439 7 N -0.333 5.333 8 C -0.029 4.029 9 C 0.024 3.976 10 H 0.110 0.890 11 N -0.360 5.360 12 C 0.324 3.676 13 O -0.434 6.434 14 C -0.284 4.284 15 S 0.092 5.908 16 C -0.697 4.697 17 H 0.095 0.905 18 C -0.187 4.187 19 N -0.545 5.545 20 Si 0.816 3.184 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.154 4.154 25 C -0.167 4.167 26 C 0.038 3.962 27 H 0.108 0.892 28 C -0.182 4.182 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.243 0.757 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.948 -12.730 -18.380 23.729 hybrid contribution -1.632 0.285 1.650 2.338 sum -9.580 -12.446 -16.730 22.947 Atomic orbital electron populations 1.20941 0.90728 1.01786 1.02854 1.22846 0.97085 0.95237 0.88165 1.21074 0.99902 0.93640 1.03837 1.22639 1.00392 0.92587 1.12520 1.18610 0.86868 0.84633 0.76060 1.90804 1.14242 1.87287 1.51550 1.47973 1.08483 1.05639 1.71233 1.22295 0.80224 1.02010 0.98361 1.21484 0.99327 0.93370 0.83458 0.88951 1.45907 1.21516 1.39314 1.29294 1.19887 0.84832 0.79285 0.83569 1.90676 1.21408 1.63058 1.68277 1.23372 1.03656 1.02464 0.98900 1.85413 1.25893 1.45304 1.34180 1.23217 1.06015 1.26250 1.14180 0.90495 1.26042 0.96250 0.95454 1.00974 1.70167 1.17557 1.27292 1.39474 0.84972 0.78311 0.78122 0.76971 1.18430 1.19729 1.19801 1.21790 0.95209 0.93623 1.04758 1.22010 0.96254 1.01242 0.97150 1.21467 0.92790 0.82921 0.98982 0.89194 1.22030 0.93571 0.99915 1.02692 0.92060 0.91272 0.90431 0.88397 0.90160 0.91907 0.85730 0.87860 0.90737 0.75672 0.88706 0.87826 0.91937 0.87670 0.89901 0.92646 0.87872 0.92931 0.92177 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.33 71.24 0.59 -1.99 16 2 C -0.03 -0.79 6.11 -17.62 -0.11 -0.89 16 3 C -0.13 -2.74 9.98 71.23 0.71 -2.03 16 4 C -0.26 -6.89 8.85 23.43 0.21 -6.69 16 5 C 0.55 14.28 7.51 86.57 0.65 14.93 16 6 O -0.56 -16.18 8.50 -4.07 -0.03 -16.21 16 7 N -0.60 -12.27 2.89 -799.27 -2.31 -14.58 16 8 C 0.09 1.83 5.91 86.36 0.51 2.34 16 9 C 0.13 2.47 2.81 45.07 0.13 2.60 16 10 H 0.09 2.02 7.58 -2.38 -0.02 2.00 16 11 N -0.71 -17.50 4.92 -442.16 -2.17 -19.67 16 12 C 0.54 19.30 7.81 87.66 0.68 19.99 16 13 O -0.56 -24.08 15.53 -3.02 -0.05 -24.13 16 14 C -0.13 -5.37 6.16 71.24 0.44 -4.93 16 15 S -0.14 -7.44 20.57 -56.49 -1.16 -8.60 16 16 C -0.55 -31.53 9.50 67.95 0.65 -30.89 16 17 H 0.08 4.19 7.80 -2.91 -0.02 4.16 16 18 C 0.02 1.02 5.49 84.86 0.47 1.48 16 19 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 20 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C -0.12 -1.33 5.59 30.62 0.17 -1.16 16 25 C -0.13 -1.54 5.21 30.67 0.16 -1.38 16 26 C 0.14 2.20 3.49 44.98 0.16 2.36 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 28 C -0.12 -2.40 7.60 71.98 0.55 -1.85 16 29 H 0.06 1.71 7.38 -2.38 -0.02 1.69 16 30 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 31 H 0.08 1.95 7.07 -2.39 -0.02 1.93 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 34 H 0.06 1.51 8.07 -2.38 -0.02 1.49 16 35 H 0.12 3.26 6.06 -2.91 -0.02 3.24 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.85 5.43 -2.39 -0.01 1.83 16 38 H 0.41 8.71 6.77 -92.71 -0.63 8.09 16 39 H 0.09 3.68 8.14 -2.40 -0.02 3.66 16 40 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 0.82 6.40 -2.39 -0.02 0.81 16 45 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 1.22 6.69 -2.39 -0.02 1.21 16 47 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.05 1.14 6.80 -2.39 -0.02 1.12 16 Total: -1.00 -75.42 390.48 2.88 -72.53 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.34 Total: 28.01 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.96 Total: -8.10 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -4.20 Total: -89.32 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.08 Total: -40.34 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.16 Total: -8.60 kcal Total: -75.42 2.88 -72.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756796368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.599 kcal (2) G-P(sol) polarization free energy of solvation -75.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds