Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 119.99760 * 2 1 4 4 C 1.32994 * 120.00043 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00039 * 352.49384 * 4 2 1 6 6 O 1.21616 * 119.99560 * 353.85732 * 5 4 2 7 7 N 1.34771 * 120.00119 * 173.86918 * 5 4 2 8 8 C 1.46921 * 120.63149 * 356.03198 * 7 5 4 9 9 C 1.53186 * 108.77870 * 233.61150 * 8 7 5 10 10 H 1.08998 * 109.50178 * 65.31483 * 9 8 7 11 11 N 1.46502 * 109.52606 * 185.39844 * 9 8 7 12 12 C 1.34781 * 119.99772 * 274.84887 * 11 9 8 13 13 O 1.21276 * 120.00034 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99684 * 179.97438 * 12 11 9 15 15 S 1.81009 * 109.46939 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99779 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00326 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99573 * 180.02562 * 16 15 14 19 19 N 1.31627 * 120.00153 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99865 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47149 * 59.99977 * 20 18 16 22 22 H 1.48504 * 109.47342 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47460 * 300.00306 * 20 18 16 24 24 C 1.53043 * 109.31503 * 305.36365 * 9 8 7 25 25 C 1.53045 * 109.53300 * 61.36236 * 24 9 8 26 26 C 1.47003 * 120.61446 * 176.03477 * 7 5 4 27 27 H 1.08996 * 109.58095 * 246.16600 * 26 7 5 28 28 C 1.52998 * 109.62702 * 6.61657 * 26 7 5 29 29 H 1.08999 * 109.46719 * 265.14929 * 1 2 3 30 30 H 1.08994 * 109.47201 * 25.14366 * 1 2 3 31 31 H 1.09003 * 109.47311 * 145.15424 * 1 2 3 32 32 H 1.09001 * 109.47185 * 269.99478 * 3 2 1 33 33 H 1.08997 * 109.47176 * 30.00330 * 3 2 1 34 34 H 1.09008 * 109.46933 * 150.00160 * 3 2 1 35 35 H 1.08001 * 120.00273 * 172.48501 * 4 2 1 36 36 H 1.09001 * 109.58738 * 113.82348 * 8 7 5 37 37 H 1.09001 * 109.70348 * 353.47020 * 8 7 5 38 38 H 0.96997 * 120.00318 * 94.85921 * 11 9 8 39 39 H 1.08991 * 109.47671 * 300.00787 * 14 12 11 40 40 H 1.09005 * 109.47095 * 60.01237 * 14 12 11 41 41 H 0.97003 * 120.00379 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.45801 * 301.35069 * 24 9 8 43 43 H 1.08995 * 109.44926 * 181.37699 * 24 9 8 44 44 H 1.09001 * 109.49564 * 58.58999 * 25 24 9 45 45 H 1.09003 * 109.49610 * 178.65680 * 25 24 9 46 46 H 1.08998 * 109.46649 * 172.60261 * 28 26 7 47 47 H 1.08992 * 109.47294 * 292.60649 * 28 26 7 48 48 H 1.09001 * 109.47319 * 52.60992 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4460 -2.4203 0.1653 6 8 0.2556 -2.4115 0.4143 7 7 2.0999 -3.5922 0.0417 8 6 3.5174 -3.6214 -0.3437 9 6 3.6799 -4.5432 -1.5563 10 1 3.1566 -4.1152 -2.4114 11 7 5.1026 -4.6864 -1.8754 12 6 5.7136 -3.7725 -2.6552 13 8 5.0859 -2.8314 -3.0923 14 6 7.1772 -3.9195 -2.9829 15 16 7.6999 -2.5458 -4.0393 16 6 9.3983 -2.9591 -4.2606 17 1 9.8035 -3.8455 -3.7953 18 6 10.2156 -2.1455 -5.0332 19 7 9.7219 -1.0649 -5.5999 20 14 12.0163 -2.5833 -5.2673 21 1 12.1217 -3.9157 -5.9145 22 1 12.6663 -1.5619 -6.1273 23 1 12.6928 -2.6201 -3.9458 24 6 3.0887 -5.9168 -1.2310 25 6 1.5950 -5.7728 -0.9303 26 6 1.4082 -4.8654 0.2898 27 1 1.8328 -5.3461 1.1711 28 6 -0.0830 -4.6052 0.5121 29 1 -0.3633 -0.0869 1.0240 30 1 -0.3633 0.9302 -0.4366 31 1 -0.3634 -0.8434 -0.5872 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0647 0.5139 34 1 3.2130 1.1748 0.5139 35 1 3.2451 -1.1558 -0.1228 36 1 4.1139 -4.0007 0.4861 37 1 3.8488 -2.6157 -0.6021 38 1 5.6047 -5.4389 -1.5256 39 1 7.7587 -3.9103 -2.0611 40 1 7.3396 -4.8622 -3.5055 41 1 10.2931 -0.4961 -6.1395 42 1 3.5957 -6.3334 -0.3606 43 1 3.2250 -6.5818 -2.0837 44 1 1.0914 -5.3331 -1.7912 45 1 1.1696 -6.7545 -0.7220 46 1 -0.6137 -5.5559 0.5649 47 1 -0.2215 -4.0595 1.4453 48 1 -0.4763 -4.0152 -0.3157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756796370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -48.417320 kcal Electronic energy + Delta-G solvation = -27660.896156 eV Core-core repulsion = 23842.754141 eV Total energy + Delta-G solvation = -3818.142015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86881 -39.36875 -37.70653 -35.65310 -34.45043 -33.27652 -32.45897 -31.54446 -29.19469 -28.11505 -27.82117 -26.82306 -25.51346 -24.73503 -22.78329 -21.47111 -20.46363 -19.84553 -18.13960 -17.88169 -17.18604 -16.44161 -16.30268 -15.74560 -15.48836 -15.01774 -14.83141 -14.55171 -14.39937 -14.25016 -14.08375 -13.97889 -13.70244 -13.26139 -13.11611 -12.87908 -12.74592 -12.57024 -12.40710 -12.36628 -12.26386 -12.06184 -11.77160 -11.60376 -11.37131 -11.27393 -11.15073 -11.07658 -11.06305 -10.84771 -10.76442 -9.85673 -9.50096 -9.26464 -9.17530 -9.08408 -8.95539 -8.53706 -8.28159 -6.53673 -6.24589 -3.95527 1.29391 2.68722 2.98953 3.06195 3.21094 3.21290 3.25823 3.29594 3.66119 4.17598 4.39315 4.42849 4.53527 4.65456 4.74924 4.78652 4.96122 5.02342 5.09897 5.10692 5.12785 5.24591 5.32392 5.34818 5.40031 5.45718 5.49226 5.56191 5.59263 5.65306 5.72995 5.73643 5.74690 5.79333 5.83920 5.94617 5.99216 6.07581 6.09418 6.20745 6.39900 6.46428 6.50239 6.58713 7.31034 7.56219 7.62093 8.15431 8.31915 8.52521 9.20720 10.82729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.002580 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.416416 B =10849.069606 C =12509.242260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.028 4.028 3 C -0.130 4.130 4 C -0.243 4.243 5 C 0.554 3.446 6 O -0.537 6.537 7 N -0.605 5.605 8 C 0.096 3.904 9 C 0.134 3.866 10 H 0.093 0.907 11 N -0.733 5.733 12 C 0.532 3.468 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.127 4.127 25 C -0.128 4.128 26 C 0.142 3.858 27 H 0.070 0.930 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.068 0.932 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.715 -7.013 14.307 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.030 4.030 3 C -0.186 4.186 4 C -0.264 4.264 5 C 0.346 3.654 6 O -0.417 6.417 7 N -0.338 5.338 8 C -0.029 4.029 9 C 0.028 3.972 10 H 0.111 0.889 11 N -0.388 5.388 12 C 0.319 3.681 13 O -0.387 6.387 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.165 4.165 25 C -0.166 4.166 26 C 0.039 3.961 27 H 0.088 0.912 28 C -0.192 4.192 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.347 -5.273 13.581 23.428 hybrid contribution 2.546 -1.849 0.441 3.177 sum -15.801 -7.122 14.022 22.294 Atomic orbital electron populations 1.21148 0.91021 1.02484 1.03260 1.22570 0.96722 0.94568 0.89152 1.21031 1.00093 0.94189 1.03306 1.22541 1.00782 0.92011 1.11076 1.18532 0.86512 0.83892 0.76418 1.90783 1.14692 1.86977 1.49275 1.47963 1.11237 1.05798 1.68845 1.22232 0.81147 1.02601 0.96880 1.21171 0.82417 0.95730 0.97895 0.88929 1.46022 1.10133 1.29052 1.53577 1.20380 0.89130 0.81615 0.77009 1.90712 1.66208 1.30800 1.51028 1.23540 0.93972 1.07434 1.05527 1.85395 1.09901 1.27262 1.60674 1.22824 0.94842 1.13576 1.37261 0.90976 1.24987 0.99328 0.94491 0.94731 1.70001 1.36422 1.13096 1.30750 0.86229 0.82668 0.78298 0.78337 1.19933 1.20800 1.19937 1.21819 0.96013 0.96279 1.02428 1.21981 0.95816 1.00130 0.98713 1.21322 0.94264 0.83529 0.96959 0.91224 1.22201 0.92601 0.99776 1.04573 0.90507 0.92736 0.89322 0.90053 0.91014 0.90953 0.85300 0.91246 0.88443 0.76621 0.89157 0.89186 0.92100 0.91157 0.90645 0.91016 0.90222 0.94134 0.91303 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.47 36.01 0.31 -0.99 16 2 C -0.03 -0.31 6.11 -101.17 -0.62 -0.93 16 3 C -0.13 -1.17 10.02 36.00 0.36 -0.81 16 4 C -0.24 -2.95 8.85 -37.80 -0.33 -3.28 16 5 C 0.55 7.02 7.39 -12.67 -0.09 6.93 16 6 O -0.54 -7.34 8.70 5.26 0.05 -7.30 16 7 N -0.60 -6.67 2.97 -166.56 -0.50 -7.17 16 8 C 0.10 1.04 5.89 -3.72 -0.02 1.02 16 9 C 0.13 1.48 2.60 -67.81 -0.18 1.30 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 N -0.73 -8.76 5.08 -53.69 -0.27 -9.03 16 12 C 0.53 9.19 7.82 -10.98 -0.09 9.10 16 13 O -0.51 -10.92 15.52 5.56 0.09 -10.83 16 14 C -0.15 -2.94 6.16 36.01 0.22 -2.71 16 15 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 16 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 17 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 20 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.13 -1.02 5.36 -26.69 -0.14 -1.16 16 25 C -0.13 -1.02 5.37 -26.61 -0.14 -1.16 16 26 C 0.14 1.31 3.50 -67.56 -0.24 1.08 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 C -0.13 -1.34 7.60 37.16 0.28 -1.06 16 29 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.09 1.09 6.11 -51.93 -0.32 0.77 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.07 0.63 8.07 -51.92 -0.42 0.21 16 35 H 0.13 1.54 6.04 -52.49 -0.32 1.22 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.23 5.42 -51.93 -0.28 0.95 16 38 H 0.40 3.57 8.60 -40.82 -0.35 3.22 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.78 6.95 -51.93 -0.36 0.42 16 48 H 0.08 0.91 6.53 -51.93 -0.34 0.58 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -33.57 394.17 -9.49 -43.06 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.81 Total: 3.45 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.48 Total: -5.36 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.03 Total: -41.24 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.13 Total: -18.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.57 -9.49 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756796370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.354 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds