Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50697 * 119.99760 * 2 1 4 4 C 1.32994 * 120.00043 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00039 * 352.49384 * 4 2 1 6 6 O 1.21616 * 119.99560 * 353.85732 * 5 4 2 7 7 N 1.34771 * 120.00119 * 173.86918 * 5 4 2 8 8 C 1.46921 * 120.63149 * 356.03198 * 7 5 4 9 9 C 1.53186 * 108.77870 * 233.61150 * 8 7 5 10 10 H 1.08998 * 109.50178 * 65.31483 * 9 8 7 11 11 N 1.46502 * 109.52606 * 185.39844 * 9 8 7 12 12 C 1.34781 * 119.99772 * 274.84887 * 11 9 8 13 13 O 1.21276 * 120.00034 * 0.02562 * 12 11 9 14 14 C 1.50699 * 119.99684 * 179.97438 * 12 11 9 15 15 S 1.81009 * 109.46939 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99779 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00326 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99573 * 180.02562 * 16 15 14 19 19 N 1.31627 * 120.00153 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99865 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47149 * 59.99977 * 20 18 16 22 22 H 1.48504 * 109.47342 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47460 * 300.00306 * 20 18 16 24 24 C 1.53043 * 109.31503 * 305.36365 * 9 8 7 25 25 C 1.53045 * 109.53300 * 61.36236 * 24 9 8 26 26 C 1.47003 * 120.61446 * 176.03477 * 7 5 4 27 27 H 1.08996 * 109.58095 * 246.16600 * 26 7 5 28 28 C 1.52998 * 109.62702 * 6.61657 * 26 7 5 29 29 H 1.08999 * 109.46719 * 265.14929 * 1 2 3 30 30 H 1.08994 * 109.47201 * 25.14366 * 1 2 3 31 31 H 1.09003 * 109.47311 * 145.15424 * 1 2 3 32 32 H 1.09001 * 109.47185 * 269.99478 * 3 2 1 33 33 H 1.08997 * 109.47176 * 30.00330 * 3 2 1 34 34 H 1.09008 * 109.46933 * 150.00160 * 3 2 1 35 35 H 1.08001 * 120.00273 * 172.48501 * 4 2 1 36 36 H 1.09001 * 109.58738 * 113.82348 * 8 7 5 37 37 H 1.09001 * 109.70348 * 353.47020 * 8 7 5 38 38 H 0.96997 * 120.00318 * 94.85921 * 11 9 8 39 39 H 1.08991 * 109.47671 * 300.00787 * 14 12 11 40 40 H 1.09005 * 109.47095 * 60.01237 * 14 12 11 41 41 H 0.97003 * 120.00379 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.45801 * 301.35069 * 24 9 8 43 43 H 1.08995 * 109.44926 * 181.37699 * 24 9 8 44 44 H 1.09001 * 109.49564 * 58.58999 * 25 24 9 45 45 H 1.09003 * 109.49610 * 178.65680 * 25 24 9 46 46 H 1.08998 * 109.46649 * 172.60261 * 28 26 7 47 47 H 1.08992 * 109.47294 * 292.60649 * 28 26 7 48 48 H 1.09001 * 109.47319 * 52.60992 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4460 -2.4203 0.1653 6 8 0.2556 -2.4115 0.4143 7 7 2.0999 -3.5922 0.0417 8 6 3.5174 -3.6214 -0.3437 9 6 3.6799 -4.5432 -1.5563 10 1 3.1566 -4.1152 -2.4114 11 7 5.1026 -4.6864 -1.8754 12 6 5.7136 -3.7725 -2.6552 13 8 5.0859 -2.8314 -3.0923 14 6 7.1772 -3.9195 -2.9829 15 16 7.6999 -2.5458 -4.0393 16 6 9.3983 -2.9591 -4.2606 17 1 9.8035 -3.8455 -3.7953 18 6 10.2156 -2.1455 -5.0332 19 7 9.7219 -1.0649 -5.5999 20 14 12.0163 -2.5833 -5.2673 21 1 12.1217 -3.9157 -5.9145 22 1 12.6663 -1.5619 -6.1273 23 1 12.6928 -2.6201 -3.9458 24 6 3.0887 -5.9168 -1.2310 25 6 1.5950 -5.7728 -0.9303 26 6 1.4082 -4.8654 0.2898 27 1 1.8328 -5.3461 1.1711 28 6 -0.0830 -4.6052 0.5121 29 1 -0.3633 -0.0869 1.0240 30 1 -0.3633 0.9302 -0.4366 31 1 -0.3634 -0.8434 -0.5872 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0647 0.5139 34 1 3.2130 1.1748 0.5139 35 1 3.2451 -1.1558 -0.1228 36 1 4.1139 -4.0007 0.4861 37 1 3.8488 -2.6157 -0.6021 38 1 5.6047 -5.4389 -1.5256 39 1 7.7587 -3.9103 -2.0611 40 1 7.3396 -4.8622 -3.5055 41 1 10.2931 -0.4961 -6.1395 42 1 3.5957 -6.3334 -0.3606 43 1 3.2250 -6.5818 -2.0837 44 1 1.0914 -5.3331 -1.7912 45 1 1.1696 -6.7545 -0.7220 46 1 -0.6137 -5.5559 0.5649 47 1 -0.2215 -4.0595 1.4453 48 1 -0.4763 -4.0152 -0.3157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756796370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -69.845280 kcal Electronic energy + Delta-G solvation = -27661.825342 eV Core-core repulsion = 23842.754141 eV Total energy + Delta-G solvation = -3819.071201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78879 -40.61995 -38.69320 -36.58154 -35.54041 -34.56917 -34.07986 -32.63599 -30.46694 -29.02926 -28.65851 -27.83697 -27.53863 -25.58812 -23.63020 -22.36850 -21.71012 -20.72904 -19.79450 -19.04796 -18.16119 -17.80340 -17.34535 -16.86775 -16.80436 -16.40899 -16.24863 -15.86106 -15.46491 -15.23584 -15.08670 -14.87566 -14.72488 -14.59102 -14.39912 -14.00434 -13.74697 -13.50500 -13.44968 -13.23048 -13.18303 -13.15160 -13.08240 -12.85854 -12.64875 -12.59194 -12.41543 -12.27606 -12.00935 -11.89276 -11.75227 -11.62051 -11.11599 -10.93439 -10.37078 -10.25220 -10.11107 -9.88084 -9.43426 -8.64348 -8.33268 -6.10738 0.37296 1.27486 1.44551 1.47197 1.56061 1.60446 1.90311 2.25727 2.28484 2.37258 3.00955 3.33237 3.57191 3.58832 3.80177 3.84249 3.89277 3.94312 4.06774 4.16608 4.19897 4.33957 4.37023 4.43993 4.53396 4.54779 4.62137 4.63629 4.64832 4.76155 4.79417 4.87781 4.88617 4.95750 5.00089 5.06937 5.14096 5.15837 5.29298 5.34915 5.43217 5.47389 5.54174 5.60242 5.73311 6.20962 6.38286 6.52306 7.08275 7.21190 7.26181 8.75499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.002580 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.416416 B =10849.069606 C =12509.242260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.129 4.129 4 C -0.265 4.265 5 C 0.544 3.456 6 O -0.553 6.553 7 N -0.604 5.604 8 C 0.099 3.901 9 C 0.136 3.864 10 H 0.059 0.941 11 N -0.704 5.704 12 C 0.536 3.464 13 O -0.561 6.561 14 C -0.130 4.130 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.262 1.262 24 C -0.118 4.118 25 C -0.122 4.122 26 C 0.137 3.863 27 H 0.091 0.909 28 C -0.126 4.126 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.420 0.580 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 -9.646 15.916 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.185 4.185 4 C -0.286 4.286 5 C 0.337 3.663 6 O -0.435 6.435 7 N -0.337 5.337 8 C -0.025 4.025 9 C 0.030 3.970 10 H 0.077 0.923 11 N -0.359 5.359 12 C 0.321 3.679 13 O -0.439 6.439 14 C -0.281 4.281 15 S 0.076 5.924 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.186 1.186 24 C -0.155 4.155 25 C -0.160 4.160 26 C 0.035 3.965 27 H 0.109 0.891 28 C -0.183 4.183 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.258 0.742 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.471 -7.976 15.227 24.510 hybrid contribution 2.140 -1.069 0.004 2.392 sum -15.331 -9.045 15.231 23.427 Atomic orbital electron populations 1.21080 0.90707 1.02565 1.03022 1.22881 0.97148 0.95176 0.87684 1.21078 1.00283 0.93597 1.03539 1.22632 1.00769 0.92555 1.12632 1.18703 0.86483 0.84594 0.76529 1.90783 1.15183 1.87337 1.50222 1.48021 1.11289 1.06150 1.68256 1.22163 0.81397 1.01471 0.97451 1.21222 0.81160 0.97909 0.96712 0.92315 1.45690 1.10605 1.28063 1.51524 1.20105 0.88379 0.81882 0.77485 1.90711 1.66871 1.33040 1.53266 1.23378 0.95387 1.04512 1.04812 1.85590 1.10868 1.32414 1.63496 1.23179 0.95044 1.13905 1.37259 0.89849 1.26106 1.04606 0.94206 0.94217 1.70173 1.38354 1.14493 1.31775 0.85033 0.76113 0.78303 0.78738 1.18690 1.20573 1.18619 1.21797 0.95815 0.93940 1.03984 1.21959 0.95814 1.01009 0.97259 1.21548 0.93588 0.82895 0.98463 0.89075 1.22037 0.93522 1.00192 1.02525 0.90449 0.90840 0.91344 0.90101 0.88985 0.90803 0.85677 0.88937 0.90769 0.74186 0.86932 0.87190 0.92049 0.88332 0.89743 0.92912 0.87336 0.91852 0.93033 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.47 71.24 0.60 -1.93 16 2 C -0.03 -0.61 6.11 -17.62 -0.11 -0.72 16 3 C -0.13 -2.30 10.02 71.23 0.71 -1.59 16 4 C -0.27 -6.76 8.85 23.43 0.21 -6.55 16 5 C 0.54 14.28 7.39 86.57 0.64 14.92 16 6 O -0.55 -15.78 8.70 -4.08 -0.04 -15.81 16 7 N -0.60 -13.09 2.97 -799.11 -2.38 -15.47 16 8 C 0.10 2.08 5.89 86.36 0.51 2.59 16 9 C 0.14 2.82 2.60 45.07 0.12 2.94 16 10 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 11 N -0.70 -15.33 5.08 -442.17 -2.25 -17.58 16 12 C 0.54 18.18 7.82 87.66 0.69 18.87 16 13 O -0.56 -24.63 15.52 -3.02 -0.05 -24.68 16 14 C -0.13 -4.79 6.16 71.24 0.44 -4.36 16 15 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 16 C -0.55 -30.44 9.50 67.96 0.65 -29.79 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -55.33 13.22 21.65 0.29 -55.05 16 20 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 C -0.12 -1.48 5.36 30.62 0.16 -1.31 16 25 C -0.12 -1.62 5.37 30.67 0.16 -1.46 16 26 C 0.14 2.27 3.50 44.96 0.16 2.43 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 C -0.13 -2.41 7.60 71.98 0.55 -1.87 16 29 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 30 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 31 H 0.07 1.78 6.11 -2.39 -0.01 1.76 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 34 H 0.07 1.29 8.07 -2.38 -0.02 1.28 16 35 H 0.13 3.21 6.04 -2.91 -0.02 3.20 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.94 5.42 -2.39 -0.01 1.92 16 38 H 0.42 5.90 8.60 -92.71 -0.80 5.10 16 39 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.05 1.16 6.95 -2.39 -0.02 1.15 16 48 H 0.05 1.24 6.53 -2.39 -0.02 1.23 16 Total: -1.00 -77.23 394.17 2.56 -74.67 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.16 Total: 24.99 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.95 Total: -6.61 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -4.34 Total: -88.09 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.08 Total: -40.49 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -77.23 2.56 -74.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756796370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.821 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds