Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.44626 * 2 1 4 4 C 1.53037 * 109.46179 * 119.96949 * 2 1 3 5 5 C 1.53196 * 109.31315 * 58.65507 * 4 2 1 6 6 N 1.46929 * 108.77486 * 54.63188 * 5 4 2 7 7 C 1.34783 * 120.62687 * 126.36877 * 6 5 4 8 8 O 1.21280 * 119.99660 * 180.02562 * 7 6 5 9 9 C 1.50696 * 119.99819 * 0.02562 * 7 6 5 10 10 S 1.81000 * 109.46819 * 179.97438 * 9 7 6 11 11 C 1.76205 * 100.00031 * 179.97438 * 10 9 7 12 12 H 1.07991 * 120.00078 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99932 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99965 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47072 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47162 * 119.99654 * 15 13 11 18 18 H 1.48499 * 109.47271 * 240.00027 * 15 13 11 19 19 C 1.46918 * 118.73922 * 306.39780 * 6 5 4 20 20 C 1.53043 * 109.46081 * 240.04005 * 2 1 3 21 21 H 1.08990 * 109.49664 * 181.39381 * 20 2 1 22 22 C 1.52998 * 109.49870 * 61.32512 * 20 2 1 23 23 N 1.46493 * 109.47244 * 175.00276 * 22 20 2 24 24 C 1.34779 * 120.00087 * 179.97438 * 23 22 20 25 25 O 1.21275 * 120.00158 * 0.02562 * 24 23 22 26 26 C 1.50700 * 119.99757 * 179.97438 * 24 23 22 27 27 C 1.53002 * 117.49609 * 248.74499 * 26 24 23 28 28 C 1.53005 * 117.49848 * 180.09087 * 26 24 23 29 29 H 1.08998 * 109.46800 * 300.03139 * 1 2 3 30 30 H 1.08994 * 109.47475 * 60.03021 * 1 2 3 31 31 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49886 * 298.70404 * 4 2 1 33 33 H 1.08996 * 109.49996 * 178.60767 * 4 2 1 34 34 H 1.08998 * 109.58804 * 174.42625 * 5 4 2 35 35 H 1.09003 * 109.58394 * 294.85202 * 5 4 2 36 36 H 1.09005 * 109.47250 * 299.99524 * 9 7 6 37 37 H 1.09001 * 109.47511 * 59.99735 * 9 7 6 38 38 H 0.96992 * 120.00146 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.58859 * 293.81127 * 19 6 5 40 40 H 1.09002 * 109.58786 * 173.39329 * 19 6 5 41 41 H 1.09002 * 109.47215 * 295.00299 * 22 20 2 42 42 H 1.09004 * 109.46846 * 54.99851 * 22 20 2 43 43 H 0.96998 * 120.00445 * 0.02562 * 23 22 20 44 44 H 1.08994 * 115.55655 * 34.41865 * 26 24 23 45 45 H 1.08995 * 117.50253 * 0.02562 * 27 26 24 46 46 H 1.09005 * 117.49406 * 145.02535 * 27 26 24 47 47 H 1.08996 * 117.50032 * 214.98217 * 28 26 24 48 48 H 1.09004 * 117.49445 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.4996 -2.1543 1.2641 6 7 1.8625 -2.8089 -0.0003 7 6 2.5165 -3.9874 -0.0003 8 8 2.8108 -4.5175 -1.0507 9 6 2.8818 -4.6464 1.3047 10 16 3.7446 -6.2028 0.9739 11 6 4.0449 -6.7429 2.6240 12 1 3.7120 -6.1426 3.4577 13 6 4.7094 -7.9400 2.8523 14 7 5.1147 -8.6719 1.8361 15 14 5.0272 -8.5130 4.6015 16 1 4.4755 -7.5182 5.5562 17 1 4.3694 -9.8264 4.8194 18 1 6.4897 -8.6495 4.8198 19 6 1.4996 -2.1540 -1.2644 20 6 2.0399 -0.7206 -1.2502 21 1 3.1295 -0.7427 -1.2384 22 6 1.5575 0.0200 -2.4990 23 7 2.1430 -0.5991 -3.6906 24 6 1.8567 -0.1105 -4.9137 25 8 1.1147 0.8420 -5.0277 26 6 2.4594 -0.7471 -6.1394 27 6 3.4982 0.0629 -6.9178 28 6 2.0974 -0.1451 -7.4986 29 1 -0.3633 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6958 -0.1936 2.1398 33 1 3.1296 -0.7428 1.2382 34 1 1.9382 -2.7019 2.0983 35 1 0.4147 -2.1348 1.3672 36 1 3.5322 -3.9845 1.8765 37 1 1.9758 -4.8480 1.8762 38 1 5.5794 -9.5082 1.9956 39 1 0.4146 -2.1346 -1.3676 40 1 1.9382 -2.7016 -2.0986 41 1 0.4705 -0.0358 -2.5574 42 1 1.8652 1.0643 -2.4436 43 1 2.7361 -1.3612 -3.5996 44 1 2.5985 -1.8269 -6.0883 45 1 3.7459 1.0560 -6.5431 46 1 4.3204 -0.4843 -7.3790 47 1 1.9985 -0.8289 -8.3417 48 1 1.4228 0.7111 -7.5062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756800913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -58.654156 kcal Electronic energy + Delta-G solvation = -27345.851214 eV Core-core repulsion = 23527.265297 eV Total energy + Delta-G solvation = -3818.585917 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67380 -39.92022 -38.06331 -36.50997 -35.20472 -33.64839 -32.45967 -31.70082 -29.49331 -28.17155 -26.48544 -25.52946 -24.69921 -24.13861 -22.75613 -22.03838 -20.66851 -19.81381 -18.45441 -17.75771 -17.58771 -16.84307 -16.45406 -16.11384 -15.50394 -15.33685 -15.20775 -14.83596 -14.79386 -14.71785 -14.23002 -13.97660 -13.74677 -13.50425 -13.20348 -12.96619 -12.82106 -12.66260 -12.24071 -12.12861 -11.96911 -11.88952 -11.79163 -11.38634 -11.10091 -11.05293 -11.02553 -10.95728 -10.87919 -10.78602 -10.73822 -10.70701 -10.07304 -9.82400 -9.40845 -9.32218 -9.10443 -8.53215 -8.25845 -6.53618 -6.24924 -3.95587 2.24993 2.85228 2.87948 2.99422 3.19114 3.23511 3.28594 3.54567 3.55560 4.16901 4.31161 4.33777 4.41563 4.46036 4.51383 4.56632 4.72709 4.83581 4.88511 4.94754 5.04903 5.10289 5.10479 5.17452 5.27017 5.29984 5.35879 5.40562 5.47600 5.51893 5.57353 5.60690 5.61678 5.67702 5.73722 5.79414 5.81718 5.83188 5.89221 5.96861 6.07602 6.14819 6.17921 6.57148 7.23095 7.50375 7.56969 7.97313 8.32270 8.50244 9.20653 10.82574 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002378 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.196942 B =11772.129586 C =13364.258441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.105 3.895 6 N -0.618 5.618 7 C 0.535 3.465 8 O -0.518 6.518 9 C -0.150 4.150 10 S -0.062 6.062 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.118 3.882 20 C -0.111 4.111 21 H 0.084 0.916 22 C 0.127 3.873 23 N -0.726 5.726 24 C 0.544 3.456 25 O -0.545 6.545 26 C -0.198 4.198 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.406 0.594 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 20.399 -8.653 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.018 4.018 6 N -0.354 5.354 7 C 0.324 3.676 8 O -0.393 6.393 9 C -0.301 4.301 10 S 0.165 5.835 11 C -0.682 4.682 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.006 4.006 20 C -0.131 4.131 21 H 0.102 0.898 22 C 0.003 3.997 23 N -0.378 5.378 24 C 0.331 3.669 25 O -0.423 6.423 26 C -0.219 4.219 27 C -0.190 4.190 28 C -0.185 4.185 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.241 0.759 44 H 0.144 0.856 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.333 20.111 -10.325 23.766 hybrid contribution 0.182 -0.199 2.570 2.585 sum -7.150 19.912 -7.755 22.533 Atomic orbital electron populations 1.22036 0.94898 1.02500 1.02046 1.21021 0.96206 0.99181 0.93609 0.90624 1.21954 1.01529 0.95508 0.97844 1.21774 1.00253 0.93217 0.86582 1.48062 1.59116 1.21751 1.06489 1.20348 0.76214 0.79700 0.91373 1.90680 1.52579 1.62659 1.33333 1.23549 1.04712 1.04645 0.97167 1.85395 1.71578 1.15080 1.11465 1.22891 1.43678 1.09611 0.92060 0.90898 1.24996 0.94840 0.95495 0.98280 1.70023 1.36576 1.13335 1.30330 0.86118 0.78135 0.78638 0.82616 1.19612 1.20549 1.20559 1.21555 0.99739 0.91550 0.87715 1.21811 1.01668 0.95455 0.94148 0.89794 1.21421 0.98661 0.96860 0.82738 1.46009 1.50423 1.35602 1.05741 1.19661 0.80438 0.82984 0.83837 1.90685 1.36927 1.27982 1.86683 1.22232 1.07007 1.00519 0.92108 1.22951 0.93006 1.01060 1.01981 1.22959 0.98377 1.03352 0.93845 0.92340 0.92295 0.91902 0.90393 0.91129 0.89173 0.91221 0.89274 0.89290 0.92221 0.91426 0.89111 0.90886 0.91161 0.75928 0.85559 0.88322 0.87642 0.87850 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.11 37.16 0.30 -0.80 16 2 C -0.08 -0.60 2.71 -90.58 -0.25 -0.85 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.05 5.63 -26.61 -0.15 -1.20 16 5 C 0.11 1.06 5.87 -3.71 -0.02 1.04 16 6 N -0.62 -8.13 2.97 -172.76 -0.51 -8.64 16 7 C 0.54 9.72 7.72 -10.98 -0.08 9.63 16 8 O -0.52 -11.26 15.27 5.56 0.08 -11.18 16 9 C -0.15 -2.95 4.50 36.00 0.16 -2.79 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.53 -14.96 9.50 30.94 0.29 -14.67 16 12 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 15 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.12 1.30 5.05 -3.71 -0.02 1.28 16 20 C -0.11 -0.96 2.15 -90.50 -0.19 -1.16 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 22 C 0.13 1.12 4.60 -4.05 -0.02 1.10 16 23 N -0.73 -6.71 5.33 -60.30 -0.32 -7.03 16 24 C 0.54 5.92 7.61 -10.98 -0.08 5.84 16 25 O -0.55 -7.76 16.26 5.56 0.09 -7.67 16 26 C -0.20 -1.67 6.19 -91.77 -0.57 -2.24 16 27 C -0.15 -1.09 10.24 -26.69 -0.27 -1.37 16 28 C -0.15 -1.14 10.05 -26.69 -0.27 -1.41 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 31 H 0.06 0.49 4.98 -51.93 -0.26 0.23 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 35 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 36 H 0.09 1.62 7.69 -51.91 -0.40 1.22 16 37 H 0.09 1.63 7.94 -51.91 -0.41 1.22 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.70 6.69 -51.92 -0.35 0.35 16 40 H 0.09 1.15 6.22 -51.93 -0.32 0.83 16 41 H 0.07 0.68 6.73 -51.93 -0.35 0.33 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.41 3.36 7.71 -40.82 -0.31 3.04 16 44 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.11 0.96 7.67 -51.93 -0.40 0.57 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -35.13 392.28 -10.09 -45.22 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.57 Total: 1.90 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.26 Total: -5.62 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.10 Total: -40.79 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.13 -10.09 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756800913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.438 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds