Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.01716 * 2 1 4 4 C 1.53870 * 110.03660 * 121.39570 * 2 1 3 5 5 C 1.54265 * 106.60025 * 119.28335 * 4 2 1 6 6 C 1.54891 * 104.19500 * 23.61363 * 5 4 2 7 7 H 1.08994 * 110.75590 * 80.37146 * 6 5 4 8 8 C 1.53000 * 110.75450 * 203.55985 * 6 5 4 9 9 C 1.50700 * 109.46983 * 293.54289 * 8 6 5 10 10 O 1.21282 * 120.00171 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00152 * 180.02562 * 9 8 6 12 12 C 1.46500 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.53950 * 113.73892 * 251.67106 * 12 11 9 14 14 N 1.47578 * 86.11898 * 222.04505 * 13 12 11 15 15 C 1.34768 * 134.49584 * 204.64234 * 14 13 12 16 16 O 1.21287 * 120.00505 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00113 * 0.02562 * 15 14 13 18 18 S 1.81000 * 109.47427 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00066 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00084 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00219 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99914 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47288 * 90.00281 * 23 21 19 25 25 H 1.48500 * 109.46787 * 210.00255 * 23 21 19 26 26 H 1.48500 * 109.46826 * 329.99661 * 23 21 19 27 27 C 1.47583 * 91.01260 * 24.63871 * 14 13 12 28 28 C 1.54269 * 110.03270 * 238.56604 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.05645 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.05817 * 1 2 3 32 32 H 1.08995 * 110.03570 * 238.57425 * 4 2 1 33 33 H 1.09001 * 110.02839 * 359.95032 * 4 2 1 34 34 H 1.09002 * 110.48891 * 142.29173 * 5 4 2 35 35 H 1.09003 * 110.48643 * 264.80382 * 5 4 2 36 36 H 1.08998 * 109.47723 * 53.54631 * 8 6 5 37 37 H 1.09001 * 109.47206 * 173.54744 * 8 6 5 38 38 H 0.97002 * 119.99986 * 359.97438 * 11 9 8 39 39 H 1.08996 * 112.94758 * 23.40500 * 12 11 9 40 40 H 1.08994 * 113.77351 * 336.35228 * 13 12 11 41 41 H 1.09002 * 113.76606 * 107.74673 * 13 12 11 42 42 H 1.09000 * 109.47053 * 300.00201 * 17 15 14 43 43 H 1.08998 * 109.47288 * 59.99776 * 17 15 14 44 44 H 0.97000 * 120.00162 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.77407 * 221.05484 * 27 14 13 46 46 H 1.09007 * 113.76499 * 89.66194 * 27 14 13 47 47 H 1.09000 * 110.48482 * 335.77919 * 28 2 1 48 48 H 1.08997 * 110.48904 * 98.42427 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0572 -0.7531 1.2339 5 6 2.8875 -1.9403 0.7042 6 6 3.3137 -1.5009 -0.7187 7 1 4.1710 -0.8292 -0.6749 8 6 3.6252 -2.7183 -1.5915 9 6 4.8478 -3.4193 -1.0579 10 8 5.4139 -2.9881 -0.0758 11 7 5.3122 -4.5256 -1.6719 12 6 6.5004 -5.2075 -1.1528 13 6 7.7486 -5.0375 -2.0377 14 7 8.0005 -6.4693 -1.7837 15 6 9.0983 -7.2509 -1.7906 16 8 9.0030 -8.4328 -1.5354 17 6 10.4445 -6.6566 -2.1155 18 16 11.7084 -7.9503 -2.0441 19 6 13.1378 -7.0044 -2.4523 20 1 13.0465 -5.9472 -2.6535 21 6 14.3811 -7.6181 -2.5164 22 7 15.4489 -6.9115 -2.8218 23 14 14.5388 -9.4470 -2.1705 24 1 14.3753 -10.2061 -3.4363 25 1 15.8783 -9.7280 -1.5943 26 1 13.4883 -9.8607 -1.2059 27 6 6.5673 -6.7013 -1.5188 28 6 2.0584 -0.7559 -1.2367 29 1 -0.3633 0.5147 0.8895 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5129 -0.8905 32 1 2.6867 -0.0947 1.8324 33 1 1.2230 -1.1178 1.8333 34 1 3.7638 -2.1032 1.3316 35 1 2.2778 -2.8428 0.6603 36 1 2.7776 -3.4033 -1.5757 37 1 3.8106 -2.3934 -2.6153 38 1 4.8592 -4.8708 -2.4572 39 1 6.6784 -5.0061 -0.0965 40 1 7.5213 -4.8093 -3.0790 41 1 8.5029 -4.3763 -1.6109 42 1 10.4201 -6.2279 -3.1174 43 1 10.6814 -5.8764 -1.3922 44 1 16.3178 -7.3404 -2.8662 45 1 6.3782 -7.3685 -0.6779 46 1 5.9929 -6.9620 -2.4078 47 1 1.3143 -1.4665 -1.5961 48 1 2.3297 -0.0543 -2.0255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759216752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = -60.646799 kcal Electronic energy + Delta-G solvation = -26127.762800 eV Core-core repulsion = 22309.090475 eV Total energy + Delta-G solvation = -3818.672325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83688 -39.80913 -38.54306 -37.51100 -34.13796 -33.02792 -32.44829 -30.56549 -29.91961 -28.25613 -27.18617 -26.37033 -25.59837 -24.65850 -22.19188 -21.11760 -20.33021 -19.96041 -19.17489 -17.77956 -17.40105 -17.05244 -16.70730 -16.42332 -15.76093 -15.34790 -15.16593 -14.92801 -14.67697 -14.32833 -14.09125 -13.84834 -13.74943 -13.32554 -13.25692 -13.03453 -12.99903 -12.79072 -12.67700 -12.55276 -12.32253 -11.93716 -11.57472 -11.46036 -11.27915 -11.26140 -11.13321 -11.01575 -10.95957 -10.93723 -10.74811 -10.63380 -10.12285 -9.86367 -9.61866 -9.42412 -9.01419 -8.77792 -8.52246 -6.93962 -6.29650 -4.02003 2.27758 2.37748 2.74460 2.93775 3.16019 3.32428 3.49909 3.55380 4.04134 4.10476 4.14727 4.29022 4.31739 4.39386 4.51697 4.67724 4.70142 4.78867 4.82592 5.00677 5.00828 5.04174 5.09385 5.12453 5.12985 5.16142 5.20567 5.29253 5.30213 5.35324 5.40687 5.51094 5.55479 5.61123 5.63641 5.74271 5.75334 5.79417 5.81522 5.97265 5.99932 6.05090 6.09908 6.12144 7.07541 7.63014 7.86721 7.93308 8.34824 8.40926 9.16311 10.79530 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.001604 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.333536 B =17450.450931 C =17862.154052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.077 4.077 7 H 0.084 0.916 8 C -0.134 4.134 9 C 0.515 3.485 10 O -0.530 6.530 11 N -0.724 5.724 12 C 0.112 3.888 13 C 0.090 3.910 14 N -0.648 5.648 15 C 0.559 3.441 16 O -0.515 6.515 17 C -0.116 4.116 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.097 3.903 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.102 3.898 28 C -0.116 4.116 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.403 0.597 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.538 13.207 1.815 35.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.160 4.160 5 C -0.155 4.155 6 C -0.096 4.096 7 H 0.102 0.898 8 C -0.174 4.174 9 C 0.302 3.698 10 O -0.405 6.405 11 N -0.376 5.376 12 C 0.006 3.994 13 C -0.035 4.035 14 N -0.387 5.387 15 C 0.348 3.652 16 O -0.388 6.388 17 C -0.267 4.267 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.022 4.022 28 C -0.154 4.154 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.238 0.762 39 H 0.147 0.853 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -31.867 11.637 2.894 34.048 hybrid contribution 0.306 0.522 -0.826 1.024 sum -31.561 12.159 2.068 33.885 Atomic orbital electron populations 1.21888 0.95129 1.01695 1.01483 1.21734 0.95540 0.99451 0.94935 0.91185 1.22237 0.99343 0.97285 0.97150 1.22418 0.99738 0.97251 0.96089 1.21879 0.98033 0.95145 0.94531 0.89780 1.21727 0.96163 0.98220 1.01276 1.20809 0.85530 0.80096 0.83403 1.90724 1.59283 1.64713 1.25825 1.45974 1.30196 1.28791 1.32633 1.23111 0.84359 0.91486 1.00435 1.23691 0.96637 0.82918 1.00257 1.49675 1.06466 1.10735 1.71846 1.19983 0.83989 0.85528 0.75688 1.90718 1.85459 1.15172 1.47496 1.23222 0.94126 1.04132 1.05205 1.84781 1.00583 1.13781 1.92372 1.22302 0.91709 0.98262 1.54660 0.89362 1.24704 0.94520 0.98706 0.93294 1.69938 0.98992 1.36508 1.46171 0.86737 0.79433 0.84991 0.80712 1.19193 1.19876 1.15926 1.23406 0.81746 0.95760 1.01276 1.22519 0.96773 0.98837 0.97255 0.92816 0.92652 0.92850 0.91946 0.91911 0.90371 0.92242 0.88763 0.88702 0.76223 0.85334 0.89424 0.89163 0.88565 0.88417 0.91917 0.89279 0.89679 0.91381 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.84 37.16 0.33 -0.34 16 2 C -0.10 -0.53 3.50 -89.50 -0.31 -0.84 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 4 C -0.12 -0.77 6.46 -25.62 -0.17 -0.93 16 5 C -0.12 -0.84 5.59 -25.07 -0.14 -0.98 16 6 C -0.08 -0.47 2.49 -88.63 -0.22 -0.69 16 7 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 8 C -0.13 -0.63 5.22 -27.88 -0.15 -0.77 16 9 C 0.51 3.95 7.62 -10.99 -0.08 3.86 16 10 O -0.53 -6.26 14.12 5.56 0.08 -6.18 16 11 N -0.72 -4.33 5.36 -55.33 -0.30 -4.62 16 12 C 0.11 0.95 4.43 -70.13 -0.31 0.64 16 13 C 0.09 0.87 8.41 -2.97 -0.03 0.84 16 14 N -0.65 -8.65 3.61 -178.52 -0.64 -9.30 16 15 C 0.56 10.36 8.07 -10.99 -0.09 10.27 16 16 O -0.51 -11.46 16.59 5.55 0.09 -11.36 16 17 C -0.12 -2.33 5.91 36.00 0.21 -2.12 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 23 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.10 0.97 8.59 -2.98 -0.03 0.94 16 28 C -0.12 -0.56 5.81 -25.07 -0.15 -0.71 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.08 0.74 7.05 -51.93 -0.37 0.37 16 35 H 0.06 0.40 8.02 -51.93 -0.42 -0.02 16 36 H 0.09 0.29 8.10 -51.93 -0.42 -0.13 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.40 1.23 8.73 -40.82 -0.36 0.88 16 39 H 0.13 1.32 7.46 -51.93 -0.39 0.93 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.62 8.12 -51.92 -0.42 0.20 16 47 H 0.07 0.28 7.76 -51.93 -0.40 -0.12 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -36.15 402.37 -9.79 -45.93 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.24 Total: -3.27 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.91 Total: -2.94 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.17 Total: -39.78 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.15 -9.79 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759216752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.714 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds