Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.01716 * 2 1 4 4 C 1.53870 * 110.03660 * 121.39570 * 2 1 3 5 5 C 1.54265 * 106.60025 * 119.28335 * 4 2 1 6 6 C 1.54891 * 104.19500 * 23.61363 * 5 4 2 7 7 H 1.08994 * 110.75590 * 80.37146 * 6 5 4 8 8 C 1.53000 * 110.75450 * 203.55985 * 6 5 4 9 9 C 1.50700 * 109.46983 * 293.54289 * 8 6 5 10 10 O 1.21282 * 120.00171 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00152 * 180.02562 * 9 8 6 12 12 C 1.46500 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.53950 * 113.73892 * 251.67106 * 12 11 9 14 14 N 1.47578 * 86.11898 * 222.04505 * 13 12 11 15 15 C 1.34768 * 134.49584 * 204.64234 * 14 13 12 16 16 O 1.21287 * 120.00505 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00113 * 0.02562 * 15 14 13 18 18 S 1.81000 * 109.47427 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00066 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00084 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00219 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99914 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47288 * 90.00281 * 23 21 19 25 25 H 1.48500 * 109.46787 * 210.00255 * 23 21 19 26 26 H 1.48500 * 109.46826 * 329.99661 * 23 21 19 27 27 C 1.47583 * 91.01260 * 24.63871 * 14 13 12 28 28 C 1.54269 * 110.03270 * 238.56604 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.05645 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.05817 * 1 2 3 32 32 H 1.08995 * 110.03570 * 238.57425 * 4 2 1 33 33 H 1.09001 * 110.02839 * 359.95032 * 4 2 1 34 34 H 1.09002 * 110.48891 * 142.29173 * 5 4 2 35 35 H 1.09003 * 110.48643 * 264.80382 * 5 4 2 36 36 H 1.08998 * 109.47723 * 53.54631 * 8 6 5 37 37 H 1.09001 * 109.47206 * 173.54744 * 8 6 5 38 38 H 0.97002 * 119.99986 * 359.97438 * 11 9 8 39 39 H 1.08996 * 112.94758 * 23.40500 * 12 11 9 40 40 H 1.08994 * 113.77351 * 336.35228 * 13 12 11 41 41 H 1.09002 * 113.76606 * 107.74673 * 13 12 11 42 42 H 1.09000 * 109.47053 * 300.00201 * 17 15 14 43 43 H 1.08998 * 109.47288 * 59.99776 * 17 15 14 44 44 H 0.97000 * 120.00162 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.77407 * 221.05484 * 27 14 13 46 46 H 1.09007 * 113.76499 * 89.66194 * 27 14 13 47 47 H 1.09000 * 110.48482 * 335.77919 * 28 2 1 48 48 H 1.08997 * 110.48904 * 98.42427 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0572 -0.7531 1.2339 5 6 2.8875 -1.9403 0.7042 6 6 3.3137 -1.5009 -0.7187 7 1 4.1710 -0.8292 -0.6749 8 6 3.6252 -2.7183 -1.5915 9 6 4.8478 -3.4193 -1.0579 10 8 5.4139 -2.9881 -0.0758 11 7 5.3122 -4.5256 -1.6719 12 6 6.5004 -5.2075 -1.1528 13 6 7.7486 -5.0375 -2.0377 14 7 8.0005 -6.4693 -1.7837 15 6 9.0983 -7.2509 -1.7906 16 8 9.0030 -8.4328 -1.5354 17 6 10.4445 -6.6566 -2.1155 18 16 11.7084 -7.9503 -2.0441 19 6 13.1378 -7.0044 -2.4523 20 1 13.0465 -5.9472 -2.6535 21 6 14.3811 -7.6181 -2.5164 22 7 15.4489 -6.9115 -2.8218 23 14 14.5388 -9.4470 -2.1705 24 1 14.3753 -10.2061 -3.4363 25 1 15.8783 -9.7280 -1.5943 26 1 13.4883 -9.8607 -1.2059 27 6 6.5673 -6.7013 -1.5188 28 6 2.0584 -0.7559 -1.2367 29 1 -0.3633 0.5147 0.8895 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5129 -0.8905 32 1 2.6867 -0.0947 1.8324 33 1 1.2230 -1.1178 1.8333 34 1 3.7638 -2.1032 1.3316 35 1 2.2778 -2.8428 0.6603 36 1 2.7776 -3.4033 -1.5757 37 1 3.8106 -2.3934 -2.6153 38 1 4.8592 -4.8708 -2.4572 39 1 6.6784 -5.0061 -0.0965 40 1 7.5213 -4.8093 -3.0790 41 1 8.5029 -4.3763 -1.6109 42 1 10.4201 -6.2279 -3.1174 43 1 10.6814 -5.8764 -1.3922 44 1 16.3178 -7.3404 -2.8662 45 1 6.3782 -7.3685 -0.6779 46 1 5.9929 -6.9620 -2.4078 47 1 1.3143 -1.4665 -1.5961 48 1 2.3297 -0.0543 -2.0255 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759216752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = -84.994622 kcal Electronic energy + Delta-G solvation = -26128.818601 eV Core-core repulsion = 22309.090475 eV Total energy + Delta-G solvation = -3819.728126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69247 -40.62931 -39.28446 -38.57442 -34.90307 -34.69845 -33.48964 -31.89096 -30.48354 -29.18687 -27.95419 -27.76041 -27.19321 -25.15706 -23.03515 -21.75954 -20.82975 -20.59359 -20.30264 -19.57943 -18.24655 -17.97127 -17.69350 -17.21744 -16.98320 -16.79494 -16.25440 -16.15028 -15.75046 -15.41234 -14.93946 -14.92035 -14.57598 -14.49171 -14.17886 -13.91684 -13.87215 -13.70852 -13.68165 -13.37499 -13.18569 -13.02205 -12.97716 -12.76164 -12.68279 -12.39126 -11.92884 -11.88936 -11.70053 -11.57957 -11.43826 -11.36812 -11.24363 -11.19304 -11.14398 -10.68013 -10.59208 -10.13160 -9.86767 -9.04431 -8.53857 -6.26063 0.89761 1.29915 1.38331 1.43445 1.49194 1.68882 1.79363 2.23101 2.33012 2.62506 2.84271 3.23500 3.43439 3.64244 3.71133 3.81733 3.86426 3.98879 4.07840 4.17997 4.30394 4.35710 4.39317 4.41711 4.50452 4.53910 4.57546 4.63159 4.75016 4.75436 4.77230 4.80518 4.89161 4.90677 5.00170 5.06925 5.18520 5.20142 5.28826 5.38173 5.44919 5.50209 5.58596 5.64098 5.68065 6.08394 6.40796 6.61309 6.90783 6.96869 7.33300 8.58596 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.001604 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.333536 B =17450.450931 C =17862.154052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.065 0.935 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.078 4.078 7 H 0.061 0.939 8 C -0.126 4.126 9 C 0.512 3.488 10 O -0.578 6.578 11 N -0.706 5.706 12 C 0.128 3.872 13 C 0.087 3.913 14 N -0.647 5.647 15 C 0.560 3.440 16 O -0.562 6.562 17 C -0.103 4.103 18 S -0.172 6.172 19 C -0.532 4.532 20 H 0.061 0.939 21 C 0.048 3.952 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.260 1.260 25 H -0.257 1.257 26 H -0.238 1.238 27 C 0.105 3.895 28 C -0.109 4.109 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.422 0.578 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.278 0.722 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.083 0.917 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.442 13.059 0.420 37.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.083 0.917 4 C -0.161 4.161 5 C -0.155 4.155 6 C -0.097 4.097 7 H 0.079 0.921 8 C -0.165 4.165 9 C 0.300 3.700 10 O -0.456 6.456 11 N -0.359 5.359 12 C 0.020 3.980 13 C -0.036 4.036 14 N -0.383 5.383 15 C 0.348 3.652 16 O -0.440 6.440 17 C -0.254 4.254 18 S 0.055 5.945 19 C -0.679 4.679 20 H 0.079 0.921 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.736 3.264 24 H -0.184 1.184 25 H -0.182 1.182 26 H -0.162 1.162 27 C -0.017 4.017 28 C -0.146 4.146 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.261 0.739 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.102 0.898 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -34.831 11.533 1.463 36.720 hybrid contribution 1.068 0.758 -0.366 1.360 sum -33.763 12.291 1.097 35.947 Atomic orbital electron populations 1.21864 0.94269 1.02017 1.01784 1.21750 0.96241 0.99127 0.94736 0.91677 1.22244 0.99185 0.97009 0.97705 1.22372 0.98679 0.97876 0.96539 1.21839 0.97882 0.95663 0.94304 0.92091 1.21758 0.95304 0.97610 1.01861 1.21413 0.85931 0.79973 0.82646 1.90728 1.60842 1.66022 1.28036 1.45768 1.29137 1.28089 1.32951 1.22646 0.84988 0.91067 0.99275 1.24017 0.96893 0.80478 1.02215 1.49621 1.06949 1.12082 1.69681 1.19533 0.84552 0.85158 0.75941 1.90694 1.86166 1.16960 1.50175 1.23176 0.93594 1.02193 1.06458 1.84668 1.01158 1.16288 1.92391 1.22438 0.93537 0.97491 1.54479 0.92098 1.25560 0.94230 1.02968 0.93049 1.70015 0.99707 1.38447 1.47156 0.85863 0.79916 0.79789 0.80783 1.18449 1.18157 1.16193 1.23704 0.79193 0.96184 1.02669 1.22486 0.96169 0.99005 0.96947 0.93004 0.92279 0.92121 0.93129 0.91549 0.93434 0.91499 0.86178 0.86056 0.73913 0.87317 0.86460 0.89676 0.87124 0.87583 0.91281 0.89777 0.86250 0.89842 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.84 71.98 0.64 -0.40 16 2 C -0.10 -0.95 3.50 -10.07 -0.04 -0.98 16 3 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 4 C -0.12 -1.53 6.46 31.32 0.20 -1.33 16 5 C -0.12 -1.63 5.59 31.67 0.18 -1.45 16 6 C -0.08 -0.85 2.49 -9.50 -0.02 -0.87 16 7 H 0.06 0.95 8.04 -2.39 -0.02 0.93 16 8 C -0.13 -0.77 5.22 29.85 0.16 -0.62 16 9 C 0.51 6.78 7.62 87.66 0.67 7.45 16 10 O -0.58 -13.54 14.12 -3.04 -0.04 -13.58 16 11 N -0.71 -6.18 5.36 -447.37 -2.40 -8.58 16 12 C 0.13 1.87 4.43 46.75 0.21 2.08 16 13 C 0.09 1.48 8.41 86.48 0.73 2.20 16 14 N -0.65 -16.05 3.61 -837.10 -3.02 -19.07 16 15 C 0.56 20.29 8.07 87.66 0.71 21.00 16 16 O -0.56 -24.90 16.59 -3.05 -0.05 -24.95 16 17 C -0.10 -4.10 5.91 71.24 0.42 -3.68 16 18 S -0.17 -8.88 18.55 -56.49 -1.05 -9.93 16 19 C -0.53 -31.49 10.04 67.95 0.68 -30.80 16 20 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 21 C 0.05 2.82 5.50 84.86 0.47 3.28 16 22 N -0.92 -56.12 13.97 21.65 0.30 -55.82 16 23 Si 0.91 45.31 27.74 68.60 1.90 47.21 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 26 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 27 C 0.10 1.70 8.59 86.48 0.74 2.45 16 28 C -0.11 -0.78 5.81 31.67 0.18 -0.60 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.75 7.67 -2.39 -0.02 0.73 16 34 H 0.05 0.95 7.05 -2.39 -0.02 0.94 16 35 H 0.07 0.80 8.02 -2.39 -0.02 0.79 16 36 H 0.12 0.19 8.10 -2.39 -0.02 0.17 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.42 0.62 8.73 -92.71 -0.81 -0.19 16 39 H 0.11 2.15 7.46 -2.39 -0.02 2.13 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 43 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.12 1.21 8.12 -2.38 -0.02 1.19 16 47 H 0.08 0.38 7.76 -2.39 -0.02 0.36 16 48 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -81.56 402.37 1.66 -79.90 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.10 Total: 7.09 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.92 Total: -2.27 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -5.12 Total: -83.47 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.09 Total: -38.54 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -81.56 1.66 -79.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759216752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.100 kcal (2) G-P(sol) polarization free energy of solvation -81.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds