Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.05352 * 2 1 4 4 C 1.54266 * 110.03482 * 121.41723 * 2 1 3 5 5 C 1.54891 * 104.31343 * 142.96208 * 4 2 1 6 6 C 1.54892 * 102.74959 * 321.99283 * 5 4 2 7 7 H 1.09006 * 110.48300 * 279.26869 * 6 5 4 8 8 C 1.52992 * 110.48955 * 156.75486 * 6 5 4 9 9 C 1.50704 * 109.47282 * 66.44879 * 8 6 5 10 10 O 1.21279 * 119.99591 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00110 * 179.97438 * 9 8 6 12 12 C 1.46506 * 120.00115 * 180.02562 * 11 9 8 13 13 C 1.53947 * 113.73925 * 253.74544 * 12 11 9 14 14 N 1.47814 * 86.03445 * 222.07874 * 13 12 11 15 15 C 1.34773 * 134.46159 * 204.63868 * 14 13 12 16 16 O 1.21273 * 120.00410 * 179.87371 * 15 14 13 17 17 C 1.50703 * 119.99696 * 359.87420 * 15 14 13 18 18 S 1.81000 * 109.47108 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99839 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00328 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99787 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00137 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46441 * 60.00198 * 23 21 19 25 25 H 1.48497 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47087 * 300.00593 * 23 21 19 27 27 C 1.47584 * 91.04698 * 24.55301 * 14 13 12 28 28 C 1.54224 * 110.14449 * 238.44237 * 2 1 3 29 29 H 1.09000 * 109.47475 * 300.03579 * 1 2 3 30 30 H 1.09005 * 109.47721 * 60.03924 * 1 2 3 31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.09002 * 110.48609 * 24.21622 * 4 2 1 33 33 H 1.08998 * 110.48769 * 261.70715 * 4 2 1 34 34 H 1.09000 * 110.75322 * 80.30558 * 5 4 2 35 35 H 1.09002 * 110.75336 * 203.49108 * 5 4 2 36 36 H 1.09000 * 109.47808 * 186.45463 * 8 6 5 37 37 H 1.09002 * 109.47135 * 306.45620 * 8 6 5 38 38 H 0.97002 * 120.00036 * 0.02562 * 11 9 8 39 39 H 1.08998 * 112.94251 * 25.33496 * 12 11 9 40 40 H 1.08993 * 113.77303 * 336.34772 * 13 12 11 41 41 H 1.08997 * 113.77058 * 107.74959 * 13 12 11 42 42 H 1.08995 * 109.47193 * 299.99722 * 17 15 14 43 43 H 1.09004 * 109.47074 * 60.00003 * 17 15 14 44 44 H 0.96999 * 119.99951 * 179.97438 * 22 21 19 45 45 H 1.09009 * 113.76434 * 221.14838 * 27 14 13 46 46 H 1.08998 * 113.87483 * 89.76945 * 27 14 13 47 47 H 1.09009 * 110.00234 * 121.44260 * 28 2 1 48 48 H 1.08999 * 110.02130 * 0.03680 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0584 -0.7555 1.2368 5 6 3.3151 -1.5005 0.7224 6 6 2.8916 -1.9432 -0.7003 7 1 2.2819 -2.8456 -0.6533 8 6 4.1232 -2.1757 -1.5776 9 6 4.8979 -3.3572 -1.0531 10 8 4.5034 -3.9546 -0.0742 11 7 6.0284 -3.7504 -1.6724 12 6 6.7813 -4.8993 -1.1628 13 6 8.0863 -4.5149 -0.4424 14 7 8.6960 -5.6569 -1.1558 15 6 9.7564 -6.4563 -0.9258 16 8 10.0282 -7.3430 -1.7071 17 6 10.6044 -6.2483 0.3025 18 16 11.9395 -7.4702 0.3280 19 6 12.7478 -7.0089 1.8241 20 1 12.3710 -6.1830 2.4091 21 6 13.8690 -7.7071 2.2509 22 7 14.3286 -8.7135 1.5377 23 14 14.7265 -7.2177 3.8367 24 1 13.7756 -7.3380 4.9710 25 1 15.8888 -8.1126 4.0674 26 1 15.1968 -5.8131 3.7320 27 6 7.6764 -5.5717 -2.2194 28 6 2.0610 -0.7578 -1.2338 29 1 -0.3634 0.5144 0.8896 30 1 -0.3635 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.3142 -1.4660 1.5966 33 1 2.3275 -0.0538 2.0263 34 1 4.1719 -0.8281 0.6786 35 1 3.5356 -2.3645 1.3493 36 1 3.8076 -2.3740 -2.6019 37 1 4.7562 -1.2885 -1.5578 38 1 6.3437 -3.2727 -2.4556 39 1 6.1609 -5.5994 -0.6033 40 1 8.4849 -3.5459 -0.7425 41 1 8.0450 -4.6427 0.6393 42 1 11.0300 -5.2450 0.2845 43 1 9.9879 -6.3655 1.1938 44 1 15.1124 -9.2011 1.8358 45 1 7.3084 -6.5418 -2.5539 46 1 7.9528 -4.9144 -3.0438 47 1 2.6911 -0.1000 -1.8326 48 1 1.2281 -1.1251 -1.8332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759216753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = -60.771797 kcal Electronic energy + Delta-G solvation = -26151.897024 eV Core-core repulsion = 22333.219279 eV Total energy + Delta-G solvation = -3818.677745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78178 -39.75123 -38.49127 -37.41035 -34.09319 -33.00142 -32.43417 -30.46237 -29.91219 -28.15519 -27.08399 -26.31335 -25.45172 -24.62726 -22.10995 -21.09095 -20.51756 -19.77180 -19.10289 -17.76854 -17.46310 -17.02535 -16.63662 -15.89696 -15.84990 -15.49333 -15.02615 -14.80680 -14.76094 -14.17708 -13.94908 -13.75078 -13.73673 -13.50003 -13.30651 -12.98136 -12.88071 -12.76454 -12.58055 -12.43469 -12.14848 -11.81034 -11.53455 -11.41679 -11.15910 -11.10350 -11.05265 -11.04584 -11.03936 -10.91157 -10.77642 -10.75014 -10.08561 -9.84200 -9.54051 -9.35554 -9.06461 -8.68749 -8.25987 -6.51677 -6.22006 -3.93230 2.30280 2.48273 2.86266 3.10788 3.23597 3.24984 3.28885 3.53534 4.07596 4.15549 4.16446 4.19844 4.30733 4.49330 4.53676 4.68421 4.79165 4.83817 4.89418 5.06547 5.07112 5.11466 5.13096 5.16629 5.17236 5.26930 5.27873 5.33757 5.40837 5.43039 5.52627 5.54096 5.59730 5.62376 5.67118 5.75983 5.80254 5.87267 5.93588 5.99331 6.04413 6.13022 6.13693 6.14960 7.10577 7.58896 7.72996 7.89243 8.34607 8.48244 9.23065 10.85378 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.001710 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.818282 B =16371.408558 C =17574.674216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.076 4.076 7 H 0.082 0.918 8 C -0.135 4.135 9 C 0.514 3.486 10 O -0.530 6.530 11 N -0.723 5.723 12 C 0.112 3.888 13 C 0.091 3.909 14 N -0.649 5.649 15 C 0.560 3.440 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.102 3.898 28 C -0.117 4.117 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.403 0.597 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.637 20.187 -7.465 34.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.160 4.160 5 C -0.156 4.156 6 C -0.095 4.095 7 H 0.100 0.900 8 C -0.175 4.175 9 C 0.301 3.699 10 O -0.406 6.406 11 N -0.376 5.376 12 C 0.006 3.994 13 C -0.034 4.034 14 N -0.389 5.389 15 C 0.349 3.651 16 O -0.386 6.386 17 C -0.296 4.296 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.022 4.022 28 C -0.155 4.155 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.238 0.762 39 H 0.145 0.855 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.192 18.130 -7.891 32.817 hybrid contribution 0.554 1.687 1.458 2.297 sum -25.638 19.817 -6.433 33.036 Atomic orbital electron populations 1.21889 0.95157 1.01800 1.01437 1.21800 0.95556 0.99289 0.94983 0.91224 1.22459 0.97689 0.98883 0.96960 1.22569 0.96987 1.00112 0.95889 1.21733 0.94533 0.98589 0.94629 0.90008 1.21781 0.97587 0.96884 1.01210 1.20801 0.80336 0.85324 0.83411 1.90721 1.68105 1.55907 1.25869 1.45987 1.25966 1.32733 1.32902 1.23119 0.91414 0.88661 0.96201 1.23692 0.89834 0.90439 0.99426 1.49791 1.29387 1.33402 1.26327 1.20030 0.77850 0.80112 0.87067 1.90718 1.68171 1.31772 1.47909 1.23482 1.02199 1.06702 0.97203 1.85389 1.26542 1.38977 1.32391 1.22819 1.15981 1.20591 1.09078 0.90944 1.24989 0.96105 0.94519 0.97884 1.70009 1.23312 1.19104 1.37842 0.86219 0.78756 0.78511 0.81991 1.19900 1.20769 1.19941 1.23367 0.85263 1.01410 0.92139 1.22369 0.99236 0.96555 0.97345 0.92818 0.92873 0.92568 0.91557 0.91928 0.92027 0.90215 0.88821 0.88719 0.76243 0.85472 0.89576 0.89308 0.89294 0.89187 0.92102 0.89305 0.89761 0.91740 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.85 37.15 0.33 -0.39 16 2 C -0.10 -0.53 3.52 -89.32 -0.31 -0.85 16 3 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.12 -0.79 6.35 -25.07 -0.16 -0.95 16 5 C -0.12 -0.87 5.63 -24.74 -0.14 -1.01 16 6 C -0.08 -0.48 2.47 -88.96 -0.22 -0.70 16 7 H 0.08 0.64 8.02 -51.93 -0.42 0.23 16 8 C -0.13 -0.66 5.07 -27.89 -0.14 -0.80 16 9 C 0.51 4.07 7.61 -10.99 -0.08 3.98 16 10 O -0.53 -6.37 14.13 5.56 0.08 -6.29 16 11 N -0.72 -4.57 5.37 -55.34 -0.30 -4.87 16 12 C 0.11 1.00 4.40 -70.15 -0.31 0.69 16 13 C 0.09 0.93 8.43 -2.84 -0.02 0.91 16 14 N -0.65 -9.16 3.61 -178.34 -0.64 -9.81 16 15 C 0.56 10.95 8.07 -10.99 -0.09 10.87 16 16 O -0.51 -12.04 16.59 5.56 0.09 -11.95 16 17 C -0.15 -3.04 5.91 36.01 0.21 -2.83 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.10 1.03 8.59 -2.97 -0.03 1.01 16 28 C -0.12 -0.58 6.04 -25.43 -0.15 -0.74 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 35 H 0.08 0.77 7.06 -51.93 -0.37 0.41 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.32 8.10 -51.93 -0.42 -0.10 16 38 H 0.40 1.37 8.71 -40.82 -0.36 1.02 16 39 H 0.13 1.36 7.51 -51.93 -0.39 0.97 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 46 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 47 H 0.06 0.26 7.84 -51.92 -0.41 -0.14 16 48 H 0.06 0.31 7.68 -51.93 -0.40 -0.09 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -36.48 404.88 -10.28 -46.76 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.19 Total: -3.12 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.92 Total: -3.92 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.21 Total: -40.23 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.48 -10.28 -46.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759216753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.010 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds