Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.05352 * 2 1 4 4 C 1.54266 * 110.03482 * 121.41723 * 2 1 3 5 5 C 1.54891 * 104.31343 * 142.96208 * 4 2 1 6 6 C 1.54892 * 102.74959 * 321.99283 * 5 4 2 7 7 H 1.09006 * 110.48300 * 279.26869 * 6 5 4 8 8 C 1.52992 * 110.48955 * 156.75486 * 6 5 4 9 9 C 1.50704 * 109.47282 * 66.44879 * 8 6 5 10 10 O 1.21279 * 119.99591 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00110 * 179.97438 * 9 8 6 12 12 C 1.46506 * 120.00115 * 180.02562 * 11 9 8 13 13 C 1.53947 * 113.73925 * 253.74544 * 12 11 9 14 14 N 1.47814 * 86.03445 * 222.07874 * 13 12 11 15 15 C 1.34773 * 134.46159 * 204.63868 * 14 13 12 16 16 O 1.21273 * 120.00410 * 179.87371 * 15 14 13 17 17 C 1.50703 * 119.99696 * 359.87420 * 15 14 13 18 18 S 1.81000 * 109.47108 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99839 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00328 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99787 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00137 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46441 * 60.00198 * 23 21 19 25 25 H 1.48497 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47087 * 300.00593 * 23 21 19 27 27 C 1.47584 * 91.04698 * 24.55301 * 14 13 12 28 28 C 1.54224 * 110.14449 * 238.44237 * 2 1 3 29 29 H 1.09000 * 109.47475 * 300.03579 * 1 2 3 30 30 H 1.09005 * 109.47721 * 60.03924 * 1 2 3 31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.09002 * 110.48609 * 24.21622 * 4 2 1 33 33 H 1.08998 * 110.48769 * 261.70715 * 4 2 1 34 34 H 1.09000 * 110.75322 * 80.30558 * 5 4 2 35 35 H 1.09002 * 110.75336 * 203.49108 * 5 4 2 36 36 H 1.09000 * 109.47808 * 186.45463 * 8 6 5 37 37 H 1.09002 * 109.47135 * 306.45620 * 8 6 5 38 38 H 0.97002 * 120.00036 * 0.02562 * 11 9 8 39 39 H 1.08998 * 112.94251 * 25.33496 * 12 11 9 40 40 H 1.08993 * 113.77303 * 336.34772 * 13 12 11 41 41 H 1.08997 * 113.77058 * 107.74959 * 13 12 11 42 42 H 1.08995 * 109.47193 * 299.99722 * 17 15 14 43 43 H 1.09004 * 109.47074 * 60.00003 * 17 15 14 44 44 H 0.96999 * 119.99951 * 179.97438 * 22 21 19 45 45 H 1.09009 * 113.76434 * 221.14838 * 27 14 13 46 46 H 1.08998 * 113.87483 * 89.76945 * 27 14 13 47 47 H 1.09009 * 110.00234 * 121.44260 * 28 2 1 48 48 H 1.08999 * 110.02130 * 0.03680 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0584 -0.7555 1.2368 5 6 3.3151 -1.5005 0.7224 6 6 2.8916 -1.9432 -0.7003 7 1 2.2819 -2.8456 -0.6533 8 6 4.1232 -2.1757 -1.5776 9 6 4.8979 -3.3572 -1.0531 10 8 4.5034 -3.9546 -0.0742 11 7 6.0284 -3.7504 -1.6724 12 6 6.7813 -4.8993 -1.1628 13 6 8.0863 -4.5149 -0.4424 14 7 8.6960 -5.6569 -1.1558 15 6 9.7564 -6.4563 -0.9258 16 8 10.0282 -7.3430 -1.7071 17 6 10.6044 -6.2483 0.3025 18 16 11.9395 -7.4702 0.3280 19 6 12.7478 -7.0089 1.8241 20 1 12.3710 -6.1830 2.4091 21 6 13.8690 -7.7071 2.2509 22 7 14.3286 -8.7135 1.5377 23 14 14.7265 -7.2177 3.8367 24 1 13.7756 -7.3380 4.9710 25 1 15.8888 -8.1126 4.0674 26 1 15.1968 -5.8131 3.7320 27 6 7.6764 -5.5717 -2.2194 28 6 2.0610 -0.7578 -1.2338 29 1 -0.3634 0.5144 0.8896 30 1 -0.3635 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.3142 -1.4660 1.5966 33 1 2.3275 -0.0538 2.0263 34 1 4.1719 -0.8281 0.6786 35 1 3.5356 -2.3645 1.3493 36 1 3.8076 -2.3740 -2.6019 37 1 4.7562 -1.2885 -1.5578 38 1 6.3437 -3.2727 -2.4556 39 1 6.1609 -5.5994 -0.6033 40 1 8.4849 -3.5459 -0.7425 41 1 8.0450 -4.6427 0.6393 42 1 11.0300 -5.2450 0.2845 43 1 9.9879 -6.3655 1.1938 44 1 15.1124 -9.2011 1.8358 45 1 7.3084 -6.5418 -2.5539 46 1 7.9528 -4.9144 -3.0438 47 1 2.6911 -0.1000 -1.8326 48 1 1.2281 -1.1251 -1.8332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759216753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -85.325680 kcal Electronic energy + Delta-G solvation = -26152.961761 eV Core-core repulsion = 22333.219279 eV Total energy + Delta-G solvation = -3819.742481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66526 -40.61365 -39.25730 -38.54220 -34.89097 -34.60968 -33.47918 -31.82934 -30.51553 -29.14393 -27.84033 -27.61851 -27.15779 -25.14797 -22.99092 -21.75465 -21.07699 -20.45132 -20.18631 -19.55130 -18.24004 -17.98775 -17.76164 -16.95644 -16.88045 -16.58866 -16.32448 -15.96355 -15.85644 -15.65121 -14.93673 -14.65516 -14.38311 -14.23232 -14.20424 -14.03488 -13.81506 -13.74757 -13.64886 -13.21664 -13.19672 -13.08324 -12.88365 -12.64189 -12.60753 -12.36955 -11.92298 -11.77995 -11.62299 -11.56785 -11.51495 -11.42228 -11.18019 -11.15208 -11.09268 -10.67444 -10.33756 -10.13279 -9.84281 -8.71277 -8.36803 -6.16251 1.15225 1.39597 1.42603 1.48610 1.51904 1.69351 1.81375 2.24951 2.34083 2.97173 3.12122 3.32116 3.54228 3.66892 3.71713 3.85353 3.87273 3.99341 4.10145 4.23154 4.26500 4.38070 4.41258 4.41440 4.50982 4.58274 4.62180 4.64349 4.66800 4.78219 4.80448 4.84107 4.85242 4.94652 4.99267 5.09300 5.16197 5.22104 5.28658 5.36731 5.38846 5.42832 5.49328 5.61084 5.64701 6.17102 6.43741 6.61794 7.02874 7.04029 7.33471 8.72277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.001710 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.818282 B =16371.408558 C =17574.674216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.076 4.076 7 H 0.059 0.941 8 C -0.127 4.127 9 C 0.512 3.488 10 O -0.577 6.577 11 N -0.706 5.706 12 C 0.129 3.871 13 C 0.089 3.911 14 N -0.648 5.648 15 C 0.558 3.442 16 O -0.565 6.565 17 C -0.121 4.121 18 S -0.148 6.148 19 C -0.550 4.550 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.103 3.897 28 C -0.111 4.111 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.422 0.578 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.272 0.728 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.082 0.918 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.564 23.544 -7.889 37.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.162 4.162 5 C -0.156 4.156 6 C -0.095 4.095 7 H 0.077 0.923 8 C -0.166 4.166 9 C 0.300 3.700 10 O -0.456 6.456 11 N -0.360 5.360 12 C 0.022 3.978 13 C -0.034 4.034 14 N -0.385 5.385 15 C 0.347 3.653 16 O -0.443 6.443 17 C -0.272 4.272 18 S 0.080 5.920 19 C -0.698 4.698 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.820 3.180 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.019 4.019 28 C -0.149 4.149 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.261 0.739 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.101 0.899 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -27.171 21.560 -8.349 35.676 hybrid contribution 0.669 0.718 1.559 1.842 sum -26.502 22.278 -6.791 35.281 Atomic orbital electron populations 1.21884 0.94955 1.01526 1.01882 1.21816 0.95764 0.99494 0.94529 0.90493 1.22463 0.97184 0.98771 0.97744 1.22522 0.97580 0.99090 0.96407 1.21688 0.95205 0.98261 0.94350 0.92271 1.21815 0.96725 0.96202 1.01865 1.21413 0.80297 0.85602 0.82656 1.90725 1.69255 1.57536 1.28077 1.45779 1.25230 1.31732 1.33219 1.22629 0.90805 0.89112 0.95291 1.24032 0.89767 0.90223 0.99368 1.49722 1.27678 1.33068 1.28080 1.19664 0.78966 0.80525 0.86159 1.90691 1.70103 1.34243 1.49275 1.23280 1.00119 1.04855 0.98916 1.85541 1.30238 1.43007 1.33252 1.23162 1.16464 1.20998 1.09150 0.90008 1.26132 0.96769 0.94203 1.01859 1.70174 1.23953 1.20458 1.40037 0.85000 0.77492 0.78628 0.76853 1.18768 1.20177 1.18545 1.23675 0.83687 1.02086 0.92450 1.22340 0.99386 0.96007 0.97160 0.92873 0.91955 0.93211 0.92625 0.91834 0.91358 0.93270 0.86125 0.86182 0.73945 0.87399 0.86546 0.89609 0.87502 0.87988 0.91889 0.89969 0.86344 0.89893 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.85 71.98 0.64 -0.61 16 2 C -0.10 -0.89 3.52 -9.95 -0.03 -0.92 16 3 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 4 C -0.12 -1.55 6.35 31.67 0.20 -1.35 16 5 C -0.12 -1.68 5.63 31.89 0.18 -1.50 16 6 C -0.08 -0.83 2.47 -9.72 -0.02 -0.86 16 7 H 0.06 0.92 8.02 -2.38 -0.02 0.90 16 8 C -0.13 -0.81 5.07 29.85 0.15 -0.66 16 9 C 0.51 6.97 7.61 87.66 0.67 7.64 16 10 O -0.58 -13.68 14.13 -3.03 -0.04 -13.72 16 11 N -0.71 -6.67 5.37 -447.40 -2.40 -9.07 16 12 C 0.13 2.02 4.40 46.75 0.21 2.23 16 13 C 0.09 1.60 8.43 86.44 0.73 2.33 16 14 N -0.65 -17.35 3.61 -836.55 -3.02 -20.37 16 15 C 0.56 21.86 8.07 87.66 0.71 22.57 16 16 O -0.56 -27.34 16.59 -3.01 -0.05 -27.39 16 17 C -0.12 -5.05 5.91 71.24 0.42 -4.63 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.55 -31.98 9.50 67.95 0.65 -31.34 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.02 0.88 5.49 84.86 0.47 1.35 16 22 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 23 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 C 0.10 1.86 8.59 86.48 0.74 2.60 16 28 C -0.11 -0.81 6.04 31.44 0.19 -0.62 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.41 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.79 7.85 -2.39 -0.02 0.77 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.85 8.02 -2.39 -0.02 0.83 16 35 H 0.05 1.00 7.06 -2.39 -0.02 0.98 16 36 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.12 0.24 8.10 -2.39 -0.02 0.22 16 38 H 0.42 0.94 8.71 -92.71 -0.81 0.13 16 39 H 0.11 2.23 7.51 -2.39 -0.02 2.22 16 40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 43 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 47 H 0.08 0.33 7.84 -2.38 -0.02 0.32 16 48 H 0.07 0.48 7.68 -2.39 -0.02 0.46 16 Total: -1.00 -84.23 404.88 1.66 -82.57 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.14 Total: 11.40 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.88 Total: -3.78 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -5.14 Total: -85.52 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.09 Total: -41.11 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -84.23 1.66 -82.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759216753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.751 kcal (2) G-P(sol) polarization free energy of solvation -84.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds