Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65604 * 120.00038 * 2 1 4 4 O 1.42101 * 106.40324 * 311.46609 * 3 2 1 5 5 O 1.42095 * 106.40272 * 178.54542 * 3 2 1 6 6 C 1.76203 * 107.21322 * 65.00511 * 3 2 1 7 7 C 1.38255 * 120.00212 * 90.00124 * 6 3 2 8 8 C 1.38212 * 120.00284 * 179.97438 * 7 6 3 9 9 C 1.38253 * 119.99859 * 0.02562 * 8 7 6 10 10 C 1.38215 * 120.00294 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00248 * 179.70563 * 10 9 8 12 12 H 1.08996 * 109.46956 * 200.00252 * 11 10 9 13 13 C 1.52998 * 109.47165 * 79.99757 * 11 10 9 14 14 N 1.46902 * 109.46714 * 319.99822 * 11 10 9 15 15 C 1.46904 * 110.99625 * 205.00178 * 14 11 10 16 16 C 1.52997 * 109.46829 * 179.97438 * 15 14 11 17 17 C 1.52997 * 109.47553 * 299.99863 * 16 15 14 18 18 C 1.53003 * 109.47122 * 60.00001 * 16 15 14 19 19 C 1.50702 * 109.47117 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99681 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99898 * 180.02562 * 19 16 15 22 22 N 1.31508 * 120.00263 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99685 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46794 * 60.00155 * 23 21 19 25 25 H 1.48502 * 109.46999 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47142 * 300.00061 * 23 21 19 27 27 C 1.38217 * 120.00048 * 269.97249 * 6 3 2 28 28 H 1.08998 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47021 * 299.99361 * 1 2 3 30 30 H 1.08994 * 109.47517 * 59.99642 * 1 2 3 31 31 H 0.96998 * 120.00278 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.99755 * 359.97438 * 7 6 3 33 33 H 1.08002 * 119.99776 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.00399 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.46998 * 60.00137 * 13 11 10 36 36 H 1.09003 * 109.46940 * 180.02562 * 13 11 10 37 37 H 1.08992 * 109.47129 * 299.99904 * 13 11 10 38 38 H 1.00901 * 111.00054 * 328.95576 * 14 11 10 39 39 H 1.08993 * 109.46991 * 299.99865 * 15 14 11 40 40 H 1.09000 * 109.46901 * 60.00518 * 15 14 11 41 41 H 1.09011 * 109.47111 * 60.00161 * 17 16 15 42 42 H 1.09002 * 109.47587 * 179.97438 * 17 16 15 43 43 H 1.08995 * 109.47304 * 300.00587 * 17 16 15 44 44 H 1.09001 * 109.46873 * 60.00217 * 18 16 15 45 45 H 1.09003 * 109.47217 * 179.97438 * 18 16 15 46 46 H 1.08997 * 109.47223 * 299.99847 * 18 16 15 47 47 H 0.97004 * 119.99936 * 179.97438 * 22 21 19 48 48 H 1.08001 * 119.99701 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2330 -1.0215 5 8 3.6737 1.1003 0.0346 6 6 1.9378 2.2413 1.5255 7 6 2.7383 2.0154 2.6299 8 6 2.4600 2.6490 3.8263 9 6 1.3809 3.5082 3.9189 10 6 0.5806 3.7341 2.8148 11 6 -0.5996 4.6656 2.9175 12 1 -1.2980 4.4578 2.1069 13 6 -0.1167 6.1138 2.8161 14 7 -1.2725 4.4629 4.2076 15 6 -2.6843 4.8621 4.1333 16 6 -3.3501 4.6365 5.4922 17 6 -3.2579 3.1557 5.8659 18 6 -2.6379 5.4759 6.5548 19 6 -4.7983 5.0466 5.4163 20 1 -5.2033 5.4294 4.4912 21 6 -5.6061 4.9330 6.5278 22 7 -5.1128 4.4673 7.6544 23 14 -7.4010 5.4420 6.4339 24 1 -8.0931 4.6278 5.4027 25 1 -8.0471 5.2241 7.7531 26 1 -7.4896 6.8793 6.0713 27 6 0.8593 3.1008 1.6179 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 3.5810 1.3439 2.5577 33 1 3.0851 2.4722 4.6891 34 1 1.1631 4.0030 4.8538 35 1 0.3826 6.2641 1.8589 36 1 -0.9703 6.7875 2.8909 37 1 0.5816 6.3215 3.6268 38 1 -1.1829 3.5063 4.5158 39 1 -2.7500 5.9169 3.8668 40 1 -3.1917 4.2637 3.3767 41 1 -2.2102 2.8594 5.9210 42 1 -3.7319 2.9950 6.8342 43 1 -3.7652 2.5577 5.1089 44 1 -2.7038 6.5309 6.2886 45 1 -3.1126 5.3155 7.5228 46 1 -1.5904 5.1797 6.6099 47 1 -5.6811 4.3878 8.4365 48 1 0.2341 3.2773 0.7551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414160111.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -53.357308 kcal Electronic energy + Delta-G solvation = -28009.628108 eV Core-core repulsion = 24191.271879 eV Total energy + Delta-G solvation = -3818.356229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -39.78212 -37.49561 -37.16340 -36.10467 -35.32705 -34.90460 -31.94916 -31.43441 -30.22250 -28.63359 -26.33334 -25.63551 -25.29106 -24.54406 -23.70211 -22.67647 -20.90556 -19.54881 -18.52125 -18.05713 -17.71084 -16.62647 -16.20222 -15.98882 -15.70408 -15.40017 -14.85008 -14.55098 -14.44501 -14.07508 -13.95370 -13.76818 -13.22966 -13.14244 -12.84839 -12.69048 -12.43835 -12.39067 -12.31546 -12.23583 -11.95935 -11.94078 -11.86002 -11.58059 -11.24695 -11.07114 -10.95497 -10.86487 -10.66333 -10.52156 -10.21359 -10.09680 -9.97252 -9.51151 -9.43892 -9.21036 -8.94181 -8.68067 -8.33097 -7.84277 -5.95267 -4.05813 0.12447 0.66606 1.09973 2.72392 3.28518 3.29848 3.34892 3.37510 3.55384 4.05980 4.39174 4.52500 4.61883 4.68443 4.73197 4.86998 5.10746 5.13207 5.20513 5.29479 5.30430 5.40187 5.43234 5.54442 5.62427 5.71487 5.80281 5.94772 6.06149 6.14069 6.27168 6.29036 6.35178 6.46223 6.54257 6.66292 6.67521 6.83704 7.01138 7.11221 7.31592 7.40964 7.64704 7.70752 7.78013 7.86890 8.15809 8.29458 8.51158 8.95394 9.59484 11.05219 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002522 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.746855 B =11098.201447 C =11541.249688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.699 3.301 4 O -0.957 6.957 5 O -0.962 6.962 6 C -0.679 4.679 7 C -0.026 4.026 8 C -0.141 4.141 9 C -0.040 4.040 10 C -0.099 4.099 11 C 0.118 3.882 12 H 0.050 0.950 13 C -0.134 4.134 14 N -0.679 5.679 15 C 0.075 3.925 16 C 0.070 3.930 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.509 4.509 20 H 0.051 0.949 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.889 3.111 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.020 4.020 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.338 0.662 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.009 0.991 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.019 0.981 47 H 0.259 0.741 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.670 -8.435 -11.390 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.947 6.947 5 O -0.953 6.953 6 C -0.767 4.767 7 C -0.045 4.045 8 C -0.160 4.160 9 C -0.059 4.059 10 C -0.101 4.101 11 C 0.008 3.992 12 H 0.067 0.933 13 C -0.192 4.192 14 N -0.312 5.312 15 C -0.053 4.053 16 C 0.070 3.930 17 C -0.190 4.190 18 C -0.177 4.177 19 C -0.547 4.547 20 H 0.070 0.930 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.717 3.283 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.039 4.039 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.158 0.842 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.093 0.907 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.199 -7.395 -11.613 20.507 hybrid contribution -1.596 -0.732 0.229 1.771 sum 13.602 -8.127 -11.384 19.511 Atomic orbital electron populations 1.21529 0.78168 1.04438 1.02339 1.55300 1.16346 1.24296 1.92113 1.01728 0.72778 0.72691 0.74005 1.93591 1.78659 1.68360 1.54070 1.93584 1.30866 1.83481 1.87321 1.30708 1.07811 1.16651 1.21514 1.20862 0.96147 0.96069 0.91436 1.21344 0.98480 0.98221 0.97936 1.21545 0.91706 0.93648 0.98968 1.20263 0.98059 0.98206 0.93533 1.20502 0.91611 0.94108 0.92984 0.93251 1.21773 1.01605 0.94831 1.00961 1.60785 1.16453 1.28759 1.25213 1.22224 0.84444 0.98913 0.99743 1.18073 0.93414 0.92462 0.89066 1.21835 0.96245 0.97732 1.03149 1.21640 0.96563 0.97203 1.02244 1.21072 0.94292 1.42618 0.96749 0.93042 1.24875 0.98096 0.95087 0.95433 1.69815 1.35347 1.46021 1.01177 0.86722 0.85449 0.79094 0.77053 1.20459 1.21362 1.20383 1.20827 0.93589 0.91744 0.97778 0.89772 0.91898 0.91197 0.74808 0.84569 0.84966 0.83892 0.93074 0.91875 0.92000 0.84172 0.92293 0.96749 0.97201 0.89806 0.96257 0.96283 0.90749 0.96201 0.93111 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.14 59.85 0.67 1.18 16 2 N -1.12 -7.90 6.19 -16.64 -0.10 -8.01 16 3 S 2.70 27.59 5.74 -107.50 -0.62 26.98 16 4 O -0.96 -12.51 17.01 -57.17 -0.97 -13.48 16 5 O -0.96 -11.90 17.28 -57.17 -0.99 -12.89 16 6 C -0.68 -7.32 5.95 -39.58 -0.24 -7.55 16 7 C -0.03 -0.26 9.52 -39.58 -0.38 -0.64 16 8 C -0.14 -1.43 10.05 -39.59 -0.40 -1.83 16 9 C -0.04 -0.47 9.00 -39.58 -0.36 -0.83 16 10 C -0.10 -1.23 4.71 -104.62 -0.49 -1.73 16 11 C 0.12 1.63 2.82 -68.86 -0.19 1.43 16 12 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 13 C -0.13 -1.76 9.39 37.16 0.35 -1.41 16 14 N -0.68 -11.06 4.91 -107.95 -0.53 -11.59 16 15 C 0.07 1.47 4.38 -3.82 -0.02 1.46 16 16 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 17 C -0.13 -2.98 7.92 37.16 0.29 -2.69 16 18 C -0.12 -2.78 8.09 37.16 0.30 -2.48 16 19 C -0.51 -13.33 8.01 -34.44 -0.28 -13.60 16 20 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 21 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 22 N -0.88 -23.97 9.35 55.43 0.52 -23.46 16 23 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.02 -0.23 9.14 -39.58 -0.36 -0.59 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.42 2.03 8.96 -34.47 -0.31 1.72 16 32 H 0.14 1.14 7.62 -52.49 -0.40 0.74 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.14 1.68 7.72 -52.49 -0.41 1.27 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.88 7.45 -51.93 -0.39 0.49 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.34 5.51 6.03 -39.29 -0.24 5.27 16 39 H 0.06 1.19 7.43 -51.93 -0.39 0.80 16 40 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 41 H 0.01 0.19 6.57 -51.92 -0.34 -0.16 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 1.93 6.07 -51.93 -0.31 1.61 16 46 H 0.02 0.42 7.60 -51.93 -0.39 0.02 16 47 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 48 H 0.14 1.46 7.60 -52.49 -0.40 1.06 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -31.33 393.10 -10.69 -42.02 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.63 Total: 4.85 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -1.28 Total: -26.07 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.11 Total: -43.05 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.96 Total: -26.37 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 27.59 SS G_CDS: -0.62 Total: 26.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.33 -10.69 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414160111.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.335 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds