Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65604 * 120.00038 * 2 1 4 4 O 1.42101 * 106.40324 * 311.46609 * 3 2 1 5 5 O 1.42095 * 106.40272 * 178.54542 * 3 2 1 6 6 C 1.76203 * 107.21322 * 65.00511 * 3 2 1 7 7 C 1.38255 * 120.00212 * 90.00124 * 6 3 2 8 8 C 1.38212 * 120.00284 * 179.97438 * 7 6 3 9 9 C 1.38253 * 119.99859 * 0.02562 * 8 7 6 10 10 C 1.38215 * 120.00294 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00248 * 179.70563 * 10 9 8 12 12 H 1.08996 * 109.46956 * 200.00252 * 11 10 9 13 13 C 1.52998 * 109.47165 * 79.99757 * 11 10 9 14 14 N 1.46902 * 109.46714 * 319.99822 * 11 10 9 15 15 C 1.46904 * 110.99625 * 205.00178 * 14 11 10 16 16 C 1.52997 * 109.46829 * 179.97438 * 15 14 11 17 17 C 1.52997 * 109.47553 * 299.99863 * 16 15 14 18 18 C 1.53003 * 109.47122 * 60.00001 * 16 15 14 19 19 C 1.50702 * 109.47117 * 179.97438 * 16 15 14 20 20 H 1.08003 * 119.99681 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99898 * 180.02562 * 19 16 15 22 22 N 1.31508 * 120.00263 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99685 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46794 * 60.00155 * 23 21 19 25 25 H 1.48502 * 109.46999 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47142 * 300.00061 * 23 21 19 27 27 C 1.38217 * 120.00048 * 269.97249 * 6 3 2 28 28 H 1.08998 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47021 * 299.99361 * 1 2 3 30 30 H 1.08994 * 109.47517 * 59.99642 * 1 2 3 31 31 H 0.96998 * 120.00278 * 180.02562 * 2 1 3 32 32 H 1.08000 * 119.99755 * 359.97438 * 7 6 3 33 33 H 1.08002 * 119.99776 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.00399 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.46998 * 60.00137 * 13 11 10 36 36 H 1.09003 * 109.46940 * 180.02562 * 13 11 10 37 37 H 1.08992 * 109.47129 * 299.99904 * 13 11 10 38 38 H 1.00901 * 111.00054 * 328.95576 * 14 11 10 39 39 H 1.08993 * 109.46991 * 299.99865 * 15 14 11 40 40 H 1.09000 * 109.46901 * 60.00518 * 15 14 11 41 41 H 1.09011 * 109.47111 * 60.00161 * 17 16 15 42 42 H 1.09002 * 109.47587 * 179.97438 * 17 16 15 43 43 H 1.08995 * 109.47304 * 300.00587 * 17 16 15 44 44 H 1.09001 * 109.46873 * 60.00217 * 18 16 15 45 45 H 1.09003 * 109.47217 * 179.97438 * 18 16 15 46 46 H 1.08997 * 109.47223 * 299.99847 * 18 16 15 47 47 H 0.97004 * 119.99936 * 179.97438 * 22 21 19 48 48 H 1.08001 * 119.99701 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2330 -1.0215 5 8 3.6737 1.1003 0.0346 6 6 1.9378 2.2413 1.5255 7 6 2.7383 2.0154 2.6299 8 6 2.4600 2.6490 3.8263 9 6 1.3809 3.5082 3.9189 10 6 0.5806 3.7341 2.8148 11 6 -0.5996 4.6656 2.9175 12 1 -1.2980 4.4578 2.1069 13 6 -0.1167 6.1138 2.8161 14 7 -1.2725 4.4629 4.2076 15 6 -2.6843 4.8621 4.1333 16 6 -3.3501 4.6365 5.4922 17 6 -3.2579 3.1557 5.8659 18 6 -2.6379 5.4759 6.5548 19 6 -4.7983 5.0466 5.4163 20 1 -5.2033 5.4294 4.4912 21 6 -5.6061 4.9330 6.5278 22 7 -5.1128 4.4673 7.6544 23 14 -7.4010 5.4420 6.4339 24 1 -8.0931 4.6278 5.4027 25 1 -8.0471 5.2241 7.7531 26 1 -7.4896 6.8793 6.0713 27 6 0.8593 3.1008 1.6179 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 3.5810 1.3439 2.5577 33 1 3.0851 2.4722 4.6891 34 1 1.1631 4.0030 4.8538 35 1 0.3826 6.2641 1.8589 36 1 -0.9703 6.7875 2.8909 37 1 0.5816 6.3215 3.6268 38 1 -1.1829 3.5063 4.5158 39 1 -2.7500 5.9169 3.8668 40 1 -3.1917 4.2637 3.3767 41 1 -2.2102 2.8594 5.9210 42 1 -3.7319 2.9950 6.8342 43 1 -3.7652 2.5577 5.1089 44 1 -2.7038 6.5309 6.2886 45 1 -3.1126 5.3155 7.5228 46 1 -1.5904 5.1797 6.6099 47 1 -5.6811 4.3878 8.4365 48 1 0.2341 3.2773 0.7551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414160111.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -74.180275 kcal Electronic energy + Delta-G solvation = -28010.531059 eV Core-core repulsion = 24191.271879 eV Total energy + Delta-G solvation = -3819.259180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.70598 -38.65434 -38.38992 -37.01519 -36.37365 -35.91083 -33.63062 -32.27280 -31.54575 -29.81130 -27.48822 -27.23863 -26.87440 -26.01842 -24.63344 -23.72838 -21.90709 -20.35855 -20.28735 -18.91151 -18.60186 -17.80870 -17.38538 -17.04033 -16.93131 -16.61558 -16.23695 -15.67757 -15.45964 -15.23564 -14.81716 -14.69438 -14.57273 -14.33004 -14.15312 -13.83199 -13.69722 -13.35752 -13.29433 -13.27104 -13.22692 -13.09326 -12.98482 -12.83363 -12.70003 -12.56791 -12.54492 -12.38928 -12.13622 -12.05253 -11.81129 -11.71470 -11.28245 -10.93821 -10.59512 -10.56974 -10.34707 -10.32996 -9.88374 -9.21496 -7.96105 -6.12651 -0.66985 -0.18792 0.24728 1.43506 1.44894 1.51049 1.99652 2.44473 2.47283 2.75344 3.18838 3.26288 3.41490 3.63315 3.85426 4.07104 4.20433 4.24245 4.27298 4.40442 4.43542 4.59146 4.62762 4.67882 4.71112 4.83266 4.87060 4.88970 4.89677 4.97884 4.97981 5.03766 5.08616 5.19441 5.27362 5.31846 5.36880 5.42997 5.46231 5.57290 5.71246 5.79363 5.83405 6.08625 6.18191 6.26599 6.35758 6.50244 6.63228 6.97081 7.55042 9.01627 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.002522 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.746855 B =11098.201447 C =11541.249688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.109 6.109 3 S 2.718 3.282 4 O -0.988 6.988 5 O -0.984 6.984 6 C -0.680 4.680 7 C -0.028 4.028 8 C -0.138 4.138 9 C -0.049 4.049 10 C -0.110 4.110 11 C 0.120 3.880 12 H 0.049 0.951 13 C -0.131 4.131 14 N -0.675 5.675 15 C 0.090 3.910 16 C 0.062 3.938 17 C -0.120 4.120 18 C -0.105 4.105 19 C -0.528 4.528 20 H 0.044 0.956 21 C 0.024 3.976 22 N -0.902 5.902 23 Si 0.941 3.059 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 C -0.028 4.028 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.430 0.570 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.340 0.660 39 H 0.051 0.949 40 H 0.009 0.991 41 H 0.034 0.966 42 H 0.055 0.945 43 H 0.016 0.984 44 H 0.009 0.991 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.257 0.743 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.624 -9.463 -11.929 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.872 5.872 3 S 2.808 3.192 4 O -0.977 6.977 5 O -0.974 6.974 6 C -0.768 4.768 7 C -0.047 4.047 8 C -0.156 4.156 9 C -0.067 4.067 10 C -0.111 4.111 11 C 0.010 3.990 12 H 0.067 0.933 13 C -0.189 4.189 14 N -0.308 5.308 15 C -0.039 4.039 16 C 0.062 3.938 17 C -0.178 4.178 18 C -0.163 4.163 19 C -0.567 4.567 20 H 0.062 0.938 21 C -0.175 4.175 22 N -0.542 5.542 23 Si 0.768 3.232 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.203 1.203 27 C -0.048 4.048 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.267 0.733 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.160 0.840 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.028 0.972 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.167 -8.431 -12.161 21.917 hybrid contribution -1.851 -0.456 0.384 1.945 sum 14.316 -8.887 -11.777 20.558 Atomic orbital electron populations 1.21731 0.77368 1.06130 1.02183 1.54995 1.16735 1.23740 1.91712 1.00979 0.72101 0.72776 0.73384 1.93553 1.79101 1.69702 1.55384 1.93549 1.32430 1.83885 1.87541 1.30767 1.07623 1.16524 1.21880 1.21193 0.96368 0.96008 0.91142 1.21628 0.98017 0.97175 0.98826 1.21609 0.92285 0.94242 0.98607 1.20113 0.97971 0.98698 0.94316 1.20489 0.92058 0.94967 0.91484 0.93337 1.21744 1.01173 0.94153 1.01787 1.60689 1.14267 1.28806 1.27028 1.21866 0.86156 0.98426 0.97417 1.18109 0.92346 0.92569 0.90800 1.21658 0.97457 0.97399 1.01290 1.21471 0.97310 0.96698 1.00836 1.21434 0.96159 1.42621 0.96479 0.93771 1.25493 1.01346 0.95321 0.95323 1.69949 1.36210 1.46568 1.01432 0.85887 0.81655 0.78676 0.76982 1.20081 1.21185 1.20266 1.20895 0.94140 0.91993 0.97722 0.87201 0.92009 0.91527 0.73320 0.82608 0.82414 0.84135 0.91590 0.93026 0.92076 0.84005 0.93088 0.97237 0.94716 0.92640 0.96527 0.97201 0.93435 0.94438 0.93349 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.14 127.77 1.42 2.19 16 2 N -1.11 -13.51 6.19 -206.55 -1.28 -14.79 16 3 S 2.72 51.91 5.74 -56.49 -0.32 51.59 16 4 O -0.99 -25.09 17.01 -128.00 -2.18 -27.26 16 5 O -0.98 -22.86 17.28 -128.00 -2.21 -25.08 16 6 C -0.68 -13.49 5.95 22.27 0.13 -13.36 16 7 C -0.03 -0.50 9.52 22.27 0.21 -0.29 16 8 C -0.14 -2.44 10.05 22.27 0.22 -2.22 16 9 C -0.05 -1.05 9.00 22.27 0.20 -0.85 16 10 C -0.11 -2.57 4.71 -19.86 -0.09 -2.67 16 11 C 0.12 3.18 2.82 44.17 0.12 3.30 16 12 H 0.05 1.31 7.66 -2.39 -0.02 1.29 16 13 C -0.13 -3.31 9.39 71.98 0.68 -2.64 16 14 N -0.68 -21.28 4.91 -495.45 -2.43 -23.71 16 15 C 0.09 3.51 4.38 86.30 0.38 3.89 16 16 C 0.06 2.88 0.57 -52.93 -0.03 2.85 16 17 C -0.12 -5.39 7.92 71.98 0.57 -4.82 16 18 C -0.11 -4.93 8.09 71.98 0.58 -4.35 16 19 C -0.53 -27.84 8.01 25.60 0.21 -27.63 16 20 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 21 C 0.02 1.29 5.15 84.66 0.44 1.73 16 22 N -0.90 -49.39 9.35 21.45 0.20 -49.19 16 23 Si 0.94 42.63 29.54 68.60 2.03 44.65 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 C -0.03 -0.61 9.14 22.27 0.20 -0.40 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.43 3.20 8.96 -96.75 -0.87 2.33 16 32 H 0.16 2.14 7.62 -2.91 -0.02 2.12 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.14 3.06 7.72 -2.91 -0.02 3.04 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.41 7.45 -2.39 -0.02 1.39 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.34 10.55 6.03 -89.69 -0.54 10.01 16 39 H 0.05 2.05 7.43 -2.39 -0.02 2.04 16 40 H 0.01 0.37 8.06 -2.39 -0.02 0.36 16 41 H 0.03 1.34 6.57 -2.38 -0.02 1.32 16 42 H 0.05 2.82 6.07 -2.39 -0.01 2.80 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 45 H 0.05 2.48 6.07 -2.39 -0.01 2.46 16 46 H 0.04 1.57 7.60 -2.39 -0.02 1.55 16 47 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 48 H 0.14 2.89 7.60 -2.91 -0.02 2.87 16 Total: -1.00 -66.24 393.10 -1.39 -67.64 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.44 Total: 21.41 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 5.24 Total: -45.26 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -3.51 Total: -87.69 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -4.39 Total: -52.34 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 51.91 SS G_CDS: -0.32 Total: 51.59 kcal Total: -66.24 -1.39 -67.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414160111.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.543 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds