Wall clock time and date at job start Sat Apr 11 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65598 * 119.99875 * 2 1 4 4 O 1.42094 * 106.40159 * 178.53954 * 3 2 1 5 5 O 1.42104 * 106.40015 * 311.45745 * 3 2 1 6 6 C 1.76196 * 107.22183 * 64.99602 * 3 2 1 7 7 C 1.38239 * 119.99958 * 269.73063 * 6 3 2 8 8 C 1.38236 * 119.99654 * 179.76350 * 7 6 3 9 9 C 1.38234 * 120.00060 * 0.50726 * 8 7 6 10 10 C 1.50702 * 120.00115 * 179.72484 * 9 8 7 11 11 H 1.08996 * 109.47511 * 160.02135 * 10 9 8 12 12 C 1.53006 * 109.47076 * 280.02427 * 10 9 8 13 13 N 1.46901 * 109.47202 * 40.01738 * 10 9 8 14 14 C 1.46896 * 111.00190 * 155.00317 * 13 10 9 15 15 C 1.53007 * 109.47310 * 180.02562 * 14 13 10 16 16 C 1.53003 * 109.46826 * 299.99846 * 15 14 13 17 17 C 1.52994 * 109.47120 * 59.99454 * 15 14 13 18 18 C 1.50694 * 109.47228 * 179.97438 * 15 14 13 19 19 H 1.08011 * 119.99957 * 0.02562 * 18 15 14 20 20 C 1.37874 * 120.00156 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99706 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 120.00180 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46969 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47286 * 119.99644 * 22 20 18 25 25 H 1.48499 * 109.46826 * 239.99807 * 22 20 18 26 26 C 1.38230 * 120.00256 * 359.74471 * 9 8 7 27 27 C 1.38235 * 119.99798 * 359.97438 * 26 9 8 28 28 H 1.09001 * 109.47060 * 60.00757 * 1 2 3 29 29 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47212 * 300.00329 * 1 2 3 31 31 H 0.96997 * 119.99787 * 179.97438 * 2 1 3 32 32 H 1.07995 * 120.00109 * 359.97438 * 7 6 3 33 33 H 1.08003 * 119.99669 * 180.22800 * 8 7 6 34 34 H 1.08998 * 109.47282 * 179.97438 * 12 10 9 35 35 H 1.09005 * 109.46828 * 299.99733 * 12 10 9 36 36 H 1.08996 * 109.47189 * 59.99510 * 12 10 9 37 37 H 1.00905 * 111.00328 * 278.95990 * 13 10 9 38 38 H 1.09001 * 109.46889 * 300.00088 * 14 13 10 39 39 H 1.08997 * 109.47459 * 59.99897 * 14 13 10 40 40 H 1.08996 * 109.46994 * 59.99760 * 16 15 14 41 41 H 1.08995 * 109.47172 * 180.02562 * 16 15 14 42 42 H 1.08998 * 109.47241 * 300.00129 * 16 15 14 43 43 H 1.09001 * 109.47055 * 60.00334 * 17 15 14 44 44 H 1.09005 * 109.47445 * 179.97438 * 17 15 14 45 45 H 1.08999 * 109.47975 * 300.00318 * 17 15 14 46 46 H 0.97003 * 119.99589 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.00480 * 179.97438 * 26 9 8 48 48 H 1.07998 * 119.99963 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6737 1.1003 0.0347 5 8 1.7120 2.2329 -1.0217 6 6 1.9378 2.2416 1.5252 7 6 0.8621 3.1051 1.6160 8 6 0.5805 3.7348 2.8140 9 6 1.3808 3.5091 3.9183 10 6 1.0775 4.2004 5.2226 11 1 1.5564 3.6609 6.0397 12 6 1.6107 5.6337 5.1762 13 7 -0.3755 4.2253 5.4374 14 6 -0.6947 4.3233 6.8679 15 6 -2.2135 4.3460 7.0512 16 6 -2.7982 5.5527 6.3143 17 6 -2.8152 3.0599 6.4813 18 6 -2.5410 4.4459 8.5187 19 1 -1.7452 4.4895 9.2478 20 6 -3.8562 4.4829 8.9307 21 7 -4.8250 4.4315 8.0428 22 14 -4.2621 4.6076 10.7498 23 1 -3.0030 4.6506 11.5360 24 1 -5.0441 5.8451 10.9989 25 1 -5.0616 3.4256 11.1607 26 6 2.4595 2.6497 3.8261 27 6 2.7377 2.0155 2.6297 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.9500 -0.8400 0.0004 32 1 0.2397 3.2851 0.7520 33 1 -0.2621 4.4066 2.8859 34 1 1.3910 6.1339 6.1194 35 1 2.6889 5.6153 5.0169 36 1 1.1319 6.1732 4.3591 37 1 -0.8049 4.9768 4.9187 38 1 -0.2785 3.4634 7.3927 39 1 -0.2656 5.2394 7.2739 40 1 -2.5613 5.4799 5.2529 41 1 -3.8801 5.5691 6.4453 42 1 -2.3695 6.4690 6.7202 43 1 -2.3987 2.2002 7.0063 44 1 -3.8973 3.0758 6.6123 45 1 -2.5785 2.9871 5.4199 46 1 -5.7504 4.4579 8.3326 47 1 3.0851 2.4736 4.6888 48 1 3.5807 1.3443 2.5576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414173705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:11 Heat of formation + Delta-G solvation = -54.027424 kcal Electronic energy + Delta-G solvation = -27778.538731 eV Core-core repulsion = 23960.153444 eV Total energy + Delta-G solvation = -3818.385287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.69775 -37.43976 -37.27487 -36.05603 -35.27981 -34.98172 -32.00404 -31.16053 -30.37935 -28.54532 -26.28374 -25.63976 -25.31137 -24.62197 -23.60743 -22.72522 -20.73604 -19.74452 -18.60229 -18.25913 -17.74639 -16.54918 -16.27624 -15.82616 -15.43483 -14.94712 -14.85299 -14.55316 -14.38941 -14.09587 -14.02660 -13.60609 -13.40799 -13.19926 -13.10792 -12.84144 -12.58848 -12.35401 -12.30157 -12.22032 -12.02762 -11.89442 -11.79673 -11.44897 -11.22307 -11.20233 -10.93656 -10.84087 -10.69631 -10.59929 -10.25656 -10.11611 -9.92474 -9.47002 -9.31090 -9.11939 -9.06777 -8.68435 -8.34979 -7.85560 -5.96901 -4.07367 0.18900 0.73370 1.24643 2.78369 3.26266 3.34965 3.35429 3.38100 3.62660 4.15415 4.35733 4.48822 4.70089 4.72947 4.78203 4.85896 5.13863 5.16910 5.23583 5.28981 5.30008 5.32046 5.45299 5.48038 5.62949 5.67642 5.75678 5.89551 5.97222 6.04287 6.12688 6.23806 6.35849 6.47118 6.59208 6.63803 6.76446 6.81832 6.98998 7.09317 7.30187 7.38655 7.61067 7.69486 7.76384 7.82448 8.14343 8.27808 8.49442 8.94152 9.58091 11.03647 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.002361 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.014984 B =11855.245848 C =12467.444060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.122 6.122 3 S 2.699 3.301 4 O -0.964 6.964 5 O -0.960 6.960 6 C -0.687 4.687 7 C -0.023 4.023 8 C -0.117 4.117 9 C 0.004 3.996 10 C 0.108 3.892 11 H 0.088 0.912 12 C -0.177 4.177 13 N -0.678 5.678 14 C 0.076 3.924 15 C 0.070 3.930 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.507 4.507 19 H 0.052 0.948 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.888 3.112 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.140 4.140 27 C -0.020 4.020 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.340 0.660 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.010 0.990 41 H 0.084 0.916 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.074 0.926 45 H 0.019 0.981 46 H 0.258 0.742 47 H 0.130 0.870 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -6.142 -14.267 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.881 5.881 3 S 2.789 3.211 4 O -0.954 6.954 5 O -0.949 6.949 6 C -0.775 4.775 7 C -0.043 4.043 8 C -0.136 4.136 9 C 0.003 3.997 10 C -0.003 4.003 11 H 0.106 0.894 12 C -0.235 4.235 13 N -0.309 5.309 14 C -0.052 4.052 15 C 0.069 3.931 16 C -0.190 4.190 17 C -0.177 4.177 18 C -0.546 4.546 19 H 0.070 0.930 20 C -0.136 4.136 21 N -0.523 5.523 22 Si 0.717 3.283 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.160 4.160 27 C -0.039 4.039 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.251 0.749 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.160 0.840 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.102 0.898 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.148 0.852 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.575 -6.351 -14.949 20.541 hybrid contribution -0.199 0.712 2.088 2.215 sum 12.375 -5.639 -12.861 18.718 Atomic orbital electron populations 1.21531 0.78191 1.04387 1.02350 1.55301 1.16354 1.24294 1.92142 1.01661 0.72729 0.72661 0.74030 1.93579 1.30972 1.83506 1.87392 1.93581 1.78712 1.68409 1.54245 1.30641 1.08414 1.17130 1.21355 1.20907 0.93272 0.91913 0.98162 1.21110 0.99797 1.00802 0.91938 1.20328 0.92012 0.92194 0.95174 1.20633 0.91401 0.94564 0.93710 0.89405 1.22476 1.01507 0.96903 1.02659 1.60733 1.05855 1.52158 1.12193 1.22203 1.00020 0.98210 0.84786 1.18087 0.87381 0.92807 0.94810 1.21841 1.04775 0.97483 0.94937 1.21638 1.03153 0.96690 0.96171 1.21132 0.91840 1.50154 0.91460 0.92966 1.24882 0.96460 0.95084 0.97132 1.69840 0.99244 1.50742 1.32458 0.86604 0.78318 0.77553 0.85875 1.19967 1.21150 1.21099 1.21143 0.98435 0.98336 0.98051 1.20787 0.96073 0.95837 0.91253 0.91279 0.89861 0.91738 0.74860 0.84488 0.84859 0.91611 0.92310 0.92259 0.84031 0.92489 0.96547 0.97149 0.89761 0.96190 0.96364 0.90732 0.96163 0.93210 0.85241 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.14 59.85 0.67 1.18 16 2 N -1.12 -8.13 6.19 -16.63 -0.10 -8.23 16 3 S 2.70 27.94 5.74 -107.50 -0.62 27.33 16 4 O -0.96 -12.16 17.28 -57.17 -0.99 -13.15 16 5 O -0.96 -12.46 17.00 -57.17 -0.97 -13.43 16 6 C -0.69 -7.58 5.95 -39.58 -0.24 -7.82 16 7 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 8 C -0.12 -1.44 9.32 -39.58 -0.37 -1.81 16 9 C 0.00 0.05 4.96 -104.63 -0.52 -0.47 16 10 C 0.11 1.42 2.79 -68.86 -0.19 1.22 16 11 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 12 C -0.18 -2.07 9.14 37.16 0.34 -1.73 16 13 N -0.68 -10.85 4.92 -107.95 -0.53 -11.38 16 14 C 0.08 1.46 4.38 -3.82 -0.02 1.45 16 15 C 0.07 1.60 0.57 -155.66 -0.09 1.51 16 16 C -0.13 -2.98 7.92 37.16 0.29 -2.68 16 17 C -0.12 -2.78 8.09 37.15 0.30 -2.48 16 18 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 19 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -23.87 9.35 55.43 0.52 -23.35 16 22 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.14 -1.59 9.67 -39.59 -0.38 -1.97 16 27 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 28 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.42 2.14 8.96 -34.47 -0.31 1.83 16 32 H 0.14 1.34 7.61 -52.49 -0.40 0.94 16 33 H 0.13 1.57 7.25 -52.48 -0.38 1.19 16 34 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.34 5.35 5.86 -39.29 -0.23 5.12 16 38 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 40 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 41 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 1.93 6.07 -51.93 -0.32 1.61 16 45 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 46 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 47 H 0.13 1.21 8.04 -52.49 -0.42 0.79 16 48 H 0.14 1.23 7.62 -52.49 -0.40 0.83 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -31.49 392.72 -10.71 -42.20 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.59 Total: 5.12 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -1.32 Total: -26.67 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.12 Total: -42.96 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.96 Total: -26.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 27.94 SS G_CDS: -0.62 Total: 27.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.49 -10.71 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414173705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.825 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds