Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65602 * 119.99574 * 2 1 4 4 O 1.42098 * 106.40527 * 311.46446 * 3 2 1 5 5 O 1.42100 * 106.39870 * 178.54504 * 3 2 1 6 6 C 1.76196 * 107.21628 * 65.00559 * 3 2 1 7 7 C 1.38235 * 120.00264 * 89.99921 * 6 3 2 8 8 C 1.38236 * 120.00039 * 179.97438 * 7 6 3 9 9 C 1.38237 * 120.00090 * 359.95463 * 8 7 6 10 10 C 1.50699 * 119.99767 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47262 * 20.00137 * 10 9 8 12 12 C 1.52998 * 109.47346 * 259.99990 * 10 9 8 13 13 N 1.46907 * 109.46784 * 140.00301 * 10 9 8 14 14 C 1.46896 * 110.99778 * 205.00164 * 13 10 9 15 15 C 1.53000 * 109.47373 * 180.02562 * 14 13 10 16 16 C 1.53001 * 109.46702 * 299.99954 * 15 14 13 17 17 C 1.52999 * 109.47069 * 59.99621 * 15 14 13 18 18 C 1.50691 * 109.47515 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00247 * 1.23737 * 18 15 14 20 20 C 1.37882 * 120.00124 * 181.24234 * 18 15 14 21 21 N 1.31515 * 120.00011 * 194.10899 * 20 18 15 22 22 Si 1.86795 * 119.99869 * 14.10759 * 20 18 15 23 23 H 1.48496 * 109.47337 * 84.53497 * 22 20 18 24 24 H 1.48502 * 109.46849 * 204.53587 * 22 20 18 25 25 H 1.48501 * 109.47324 * 324.53495 * 22 20 18 26 26 C 1.38230 * 120.00126 * 0.27829 * 9 8 7 27 27 C 1.38237 * 120.00104 * 269.97475 * 6 3 2 28 28 H 1.09003 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47497 * 299.99134 * 1 2 3 30 30 H 1.08997 * 109.47805 * 59.99557 * 1 2 3 31 31 H 0.96995 * 119.99733 * 180.02562 * 2 1 3 32 32 H 1.07994 * 120.00002 * 359.97438 * 7 6 3 33 33 H 1.08002 * 119.99619 * 179.97438 * 8 7 6 34 34 H 1.09004 * 109.47060 * 300.00270 * 12 10 9 35 35 H 1.09003 * 109.46959 * 60.00526 * 12 10 9 36 36 H 1.08997 * 109.47143 * 180.02562 * 12 10 9 37 37 H 1.00900 * 110.99589 * 328.95228 * 13 10 9 38 38 H 1.09003 * 109.47831 * 59.99655 * 14 13 10 39 39 H 1.09003 * 109.47166 * 299.99921 * 14 13 10 40 40 H 1.08996 * 109.47328 * 69.51589 * 16 15 14 41 41 H 1.08998 * 109.47025 * 189.51285 * 16 15 14 42 42 H 1.08999 * 109.47302 * 309.51533 * 16 15 14 43 43 H 1.08994 * 109.47209 * 60.00499 * 17 15 14 44 44 H 1.08999 * 109.47361 * 180.02562 * 17 15 14 45 45 H 1.09004 * 109.47005 * 300.00502 * 17 15 14 46 46 H 0.97000 * 119.99650 * 179.97438 * 21 20 18 47 47 H 1.07992 * 120.00362 * 179.72956 * 26 9 8 48 48 H 1.08005 * 119.99715 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7118 2.2330 -1.0215 5 8 3.6737 1.1004 0.0346 6 6 1.9378 2.2414 1.5254 7 6 2.7381 2.0156 2.6296 8 6 2.4597 2.6493 3.8262 9 6 1.3816 3.5095 3.9184 10 6 1.0778 4.1999 5.2230 11 1 1.9682 4.1965 5.8519 12 6 -0.0550 3.4618 5.9390 13 7 0.6694 5.5863 4.9599 14 6 0.9323 6.4425 6.1242 15 6 0.4944 7.8751 5.8131 16 6 1.2790 8.3979 4.6082 17 6 -1.0019 7.8931 5.4942 18 6 0.7646 8.7536 7.0073 19 1 1.2230 8.3365 7.8918 20 6 0.4264 10.0898 6.9709 21 7 0.9014 10.9133 7.8796 22 14 -0.7062 10.7303 5.6307 23 1 -2.1196 10.5199 6.0348 24 1 -0.4604 12.1805 5.4262 25 1 -0.4391 9.9998 4.3657 26 6 0.5784 3.7316 2.8155 27 6 0.8590 3.1009 1.6178 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9499 -0.8400 -0.0004 32 1 3.5808 1.3441 2.5575 33 1 3.0848 2.4725 4.6891 34 1 -0.9454 3.4652 5.3102 35 1 0.2480 2.4331 6.1343 36 1 -0.2750 3.9614 6.8824 37 1 1.1255 5.9472 4.1353 38 1 1.9982 6.4293 6.3519 39 1 0.3729 6.0703 6.9826 40 1 0.9578 7.8717 3.7093 41 1 1.0943 9.4655 4.4897 42 1 2.3441 8.2288 4.7670 43 1 -1.5609 7.5207 6.3525 44 1 -1.3138 8.9137 5.2721 45 1 -1.1969 7.2578 4.6302 46 1 0.6638 11.8534 7.8537 47 1 -0.2665 4.4003 2.8886 48 1 0.2337 3.2773 0.7551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414173706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -34.596830 kcal Electronic energy + Delta-G solvation = -27823.440617 eV Core-core repulsion = 24005.897904 eV Total energy + Delta-G solvation = -3817.542713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.87442 -37.53934 -37.46679 -36.15022 -35.42424 -35.15678 -32.08697 -31.32510 -30.80629 -29.01991 -26.43429 -26.22841 -25.45089 -24.73602 -23.60928 -22.90645 -20.61912 -19.85628 -18.85911 -18.37372 -17.84893 -16.71346 -16.35256 -16.00398 -15.87570 -15.20230 -15.05733 -14.79633 -14.55985 -14.21490 -13.98478 -13.75687 -13.52576 -13.27993 -13.22002 -12.91820 -12.79849 -12.65554 -12.39036 -12.31055 -12.16453 -12.04725 -12.01905 -11.87301 -11.72110 -11.56665 -11.41288 -11.03910 -10.70508 -10.32022 -10.09874 -10.06290 -10.03351 -9.89783 -9.39053 -9.25895 -8.99541 -8.57984 -8.39504 -8.05017 -6.10652 -4.06649 0.06248 0.55678 1.08338 2.66193 3.22040 3.30935 3.39994 3.44241 3.49556 4.03939 4.31048 4.42014 4.50924 4.57072 4.64012 4.66563 4.99121 5.10926 5.12958 5.22435 5.27208 5.29041 5.34420 5.36968 5.50777 5.68536 5.73794 5.84333 5.86009 5.92475 5.98461 6.07925 6.22779 6.25775 6.31981 6.46291 6.48079 6.59352 6.61498 6.63074 6.79743 6.89108 6.98048 7.31783 7.39930 7.53123 7.70096 7.88222 8.51535 8.93685 9.55401 11.02692 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002417 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.411949 B =11580.390856 C =11920.976820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.699 3.301 4 O -0.957 6.957 5 O -0.961 6.961 6 C -0.684 4.684 7 C -0.020 4.020 8 C -0.137 4.137 9 C -0.022 4.022 10 C 0.111 3.889 11 H 0.054 0.946 12 C -0.133 4.133 13 N -0.683 5.683 14 C 0.084 3.916 15 C 0.042 3.958 16 C -0.145 4.145 17 C -0.135 4.135 18 C -0.514 4.514 19 H 0.071 0.929 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.889 3.111 23 H -0.287 1.287 24 H -0.308 1.308 25 H -0.248 1.248 26 C -0.121 4.121 27 C -0.024 4.024 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.418 0.582 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.340 0.660 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.045 0.955 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.263 0.737 47 H 0.144 0.856 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -24.707 -13.486 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.946 6.946 5 O -0.951 6.951 6 C -0.771 4.771 7 C -0.040 4.040 8 C -0.156 4.156 9 C -0.023 4.023 10 C 0.002 3.998 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.316 5.316 14 C -0.044 4.044 15 C 0.041 3.959 16 C -0.202 4.202 17 C -0.192 4.192 18 C -0.552 4.552 19 H 0.089 0.911 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.215 1.215 24 H -0.238 1.238 25 H -0.174 1.174 26 C -0.140 4.140 27 C -0.043 4.043 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.159 0.841 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.162 0.838 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.289 -24.157 -13.898 27.899 hybrid contribution 0.216 0.360 0.244 0.486 sum -1.073 -23.796 -13.654 27.456 Atomic orbital electron populations 1.21510 0.78352 1.04284 1.02240 1.55330 1.16264 1.24393 1.92152 1.01743 0.72801 0.72661 0.74001 1.93592 1.78679 1.68310 1.54058 1.93592 1.30817 1.83439 1.87287 1.30734 1.08064 1.16927 1.21419 1.20825 0.96039 0.95889 0.91206 1.21216 0.98035 0.98222 0.98163 1.20502 0.92742 0.93407 0.95631 1.20622 0.97517 0.90124 0.91583 0.92799 1.21760 0.97983 0.98479 1.00843 1.60793 1.62915 1.00125 1.07728 1.22032 0.97766 0.93358 0.91220 1.18451 0.91685 0.91207 0.94588 1.22307 0.99450 1.01216 0.97237 1.22164 0.98576 0.98544 0.99881 1.20842 1.41185 0.93144 0.99983 0.91124 1.24987 0.95607 0.96604 0.95696 1.69965 1.43023 1.04060 1.36311 0.87245 0.81069 0.75638 0.83892 1.21500 1.23756 1.17413 1.21300 1.00628 1.00143 0.91904 1.20966 0.93409 0.91742 0.98190 0.89898 0.91992 0.91219 0.74806 0.84443 0.85078 0.91860 0.93019 0.91639 0.84062 0.95802 0.91558 0.95467 0.92713 0.94225 0.93615 0.95142 0.93844 0.92712 0.83789 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.14 59.85 0.67 1.03 16 2 N -1.12 -6.47 6.19 -16.63 -0.10 -6.58 16 3 S 2.70 25.38 5.74 -107.50 -0.62 24.77 16 4 O -0.96 -11.75 17.01 -57.17 -0.97 -12.73 16 5 O -0.96 -11.51 17.28 -57.17 -0.99 -12.49 16 6 C -0.68 -6.76 5.95 -39.58 -0.24 -7.00 16 7 C -0.02 -0.20 9.52 -39.58 -0.38 -0.57 16 8 C -0.14 -1.40 9.67 -39.58 -0.38 -1.78 16 9 C -0.02 -0.25 4.71 -104.63 -0.49 -0.74 16 10 C 0.11 1.38 2.82 -68.86 -0.19 1.18 16 11 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 12 C -0.13 -1.50 9.39 37.16 0.35 -1.15 16 13 N -0.68 -10.23 4.92 -107.95 -0.53 -10.76 16 14 C 0.08 1.56 4.37 -3.83 -0.02 1.54 16 15 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 16 C -0.14 -3.04 7.24 37.16 0.27 -2.77 16 17 C -0.13 -2.85 7.54 37.16 0.28 -2.57 16 18 C -0.51 -13.88 8.62 -34.44 -0.30 -14.17 16 19 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 20 C 0.07 2.06 5.32 -17.82 -0.09 1.97 16 21 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 22 Si 0.89 21.86 22.79 -169.99 -3.87 17.99 16 23 H -0.29 -7.05 7.10 56.52 0.40 -6.65 16 24 H -0.31 -7.76 7.11 56.52 0.40 -7.36 16 25 H -0.25 -5.65 4.65 56.52 0.26 -5.39 16 26 C -0.12 -1.32 9.01 -39.58 -0.36 -1.68 16 27 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 31 H 0.42 1.55 8.96 -34.48 -0.31 1.25 16 32 H 0.14 1.11 7.62 -52.49 -0.40 0.71 16 33 H 0.13 1.12 8.04 -52.49 -0.42 0.69 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.80 7.45 -51.93 -0.39 0.42 16 37 H 0.34 5.13 6.27 -39.29 -0.25 4.88 16 38 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.07 1.25 7.44 -51.93 -0.39 0.86 16 40 H 0.03 0.49 7.06 -51.93 -0.37 0.13 16 41 H 0.05 1.24 4.30 -51.93 -0.22 1.01 16 42 H 0.04 0.81 8.12 -51.93 -0.42 0.38 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.03 0.68 2.26 -51.93 -0.12 0.57 16 45 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.14 1.56 7.73 -52.49 -0.41 1.15 16 48 H 0.14 1.19 7.62 -52.48 -0.40 0.79 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -34.07 383.40 -9.40 -43.47 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.52 Total: 3.43 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -1.35 Total: -26.50 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.14 Total: -43.72 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.96 Total: -25.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -3.87 Total: 17.99 kcal Atomic # 16 Polarization: 25.38 SS G_CDS: -0.62 Total: 24.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.07 -9.40 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414173706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.878 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds