Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65602 * 119.99574 * 2 1 4 4 O 1.42098 * 106.40527 * 311.46446 * 3 2 1 5 5 O 1.42100 * 106.39870 * 178.54504 * 3 2 1 6 6 C 1.76196 * 107.21628 * 65.00559 * 3 2 1 7 7 C 1.38235 * 120.00264 * 89.99921 * 6 3 2 8 8 C 1.38236 * 120.00039 * 179.97438 * 7 6 3 9 9 C 1.38237 * 120.00090 * 359.95463 * 8 7 6 10 10 C 1.50699 * 119.99767 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47262 * 20.00137 * 10 9 8 12 12 C 1.52998 * 109.47346 * 259.99990 * 10 9 8 13 13 N 1.46907 * 109.46784 * 140.00301 * 10 9 8 14 14 C 1.46896 * 110.99778 * 205.00164 * 13 10 9 15 15 C 1.53000 * 109.47373 * 180.02562 * 14 13 10 16 16 C 1.53001 * 109.46702 * 299.99954 * 15 14 13 17 17 C 1.52999 * 109.47069 * 59.99621 * 15 14 13 18 18 C 1.50691 * 109.47515 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00247 * 1.23737 * 18 15 14 20 20 C 1.37882 * 120.00124 * 181.24234 * 18 15 14 21 21 N 1.31515 * 120.00011 * 194.10899 * 20 18 15 22 22 Si 1.86795 * 119.99869 * 14.10759 * 20 18 15 23 23 H 1.48496 * 109.47337 * 84.53497 * 22 20 18 24 24 H 1.48502 * 109.46849 * 204.53587 * 22 20 18 25 25 H 1.48501 * 109.47324 * 324.53495 * 22 20 18 26 26 C 1.38230 * 120.00126 * 0.27829 * 9 8 7 27 27 C 1.38237 * 120.00104 * 269.97475 * 6 3 2 28 28 H 1.09003 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47497 * 299.99134 * 1 2 3 30 30 H 1.08997 * 109.47805 * 59.99557 * 1 2 3 31 31 H 0.96995 * 119.99733 * 180.02562 * 2 1 3 32 32 H 1.07994 * 120.00002 * 359.97438 * 7 6 3 33 33 H 1.08002 * 119.99619 * 179.97438 * 8 7 6 34 34 H 1.09004 * 109.47060 * 300.00270 * 12 10 9 35 35 H 1.09003 * 109.46959 * 60.00526 * 12 10 9 36 36 H 1.08997 * 109.47143 * 180.02562 * 12 10 9 37 37 H 1.00900 * 110.99589 * 328.95228 * 13 10 9 38 38 H 1.09003 * 109.47831 * 59.99655 * 14 13 10 39 39 H 1.09003 * 109.47166 * 299.99921 * 14 13 10 40 40 H 1.08996 * 109.47328 * 69.51589 * 16 15 14 41 41 H 1.08998 * 109.47025 * 189.51285 * 16 15 14 42 42 H 1.08999 * 109.47302 * 309.51533 * 16 15 14 43 43 H 1.08994 * 109.47209 * 60.00499 * 17 15 14 44 44 H 1.08999 * 109.47361 * 180.02562 * 17 15 14 45 45 H 1.09004 * 109.47005 * 300.00502 * 17 15 14 46 46 H 0.97000 * 119.99650 * 179.97438 * 21 20 18 47 47 H 1.07992 * 120.00362 * 179.72956 * 26 9 8 48 48 H 1.08005 * 119.99715 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7118 2.2330 -1.0215 5 8 3.6737 1.1004 0.0346 6 6 1.9378 2.2414 1.5254 7 6 2.7381 2.0156 2.6296 8 6 2.4597 2.6493 3.8262 9 6 1.3816 3.5095 3.9184 10 6 1.0778 4.1999 5.2230 11 1 1.9682 4.1965 5.8519 12 6 -0.0550 3.4618 5.9390 13 7 0.6694 5.5863 4.9599 14 6 0.9323 6.4425 6.1242 15 6 0.4944 7.8751 5.8131 16 6 1.2790 8.3979 4.6082 17 6 -1.0019 7.8931 5.4942 18 6 0.7646 8.7536 7.0073 19 1 1.2230 8.3365 7.8918 20 6 0.4264 10.0898 6.9709 21 7 0.9014 10.9133 7.8796 22 14 -0.7062 10.7303 5.6307 23 1 -2.1196 10.5199 6.0348 24 1 -0.4604 12.1805 5.4262 25 1 -0.4391 9.9998 4.3657 26 6 0.5784 3.7316 2.8155 27 6 0.8590 3.1009 1.6178 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9499 -0.8400 -0.0004 32 1 3.5808 1.3441 2.5575 33 1 3.0848 2.4725 4.6891 34 1 -0.9454 3.4652 5.3102 35 1 0.2480 2.4331 6.1343 36 1 -0.2750 3.9614 6.8824 37 1 1.1255 5.9472 4.1353 38 1 1.9982 6.4293 6.3519 39 1 0.3729 6.0703 6.9826 40 1 0.9578 7.8717 3.7093 41 1 1.0943 9.4655 4.4897 42 1 2.3441 8.2288 4.7670 43 1 -1.5609 7.5207 6.3525 44 1 -1.3138 8.9137 5.2721 45 1 -1.1969 7.2578 4.6302 46 1 0.6638 11.8534 7.8537 47 1 -0.2665 4.4003 2.8886 48 1 0.2337 3.2773 0.7551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414173706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -60.529487 kcal Electronic energy + Delta-G solvation = -27824.565141 eV Core-core repulsion = 24005.897904 eV Total energy + Delta-G solvation = -3818.667238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72709 -38.90415 -38.37200 -36.99504 -36.50496 -35.86877 -33.98116 -32.20759 -31.92779 -30.03147 -27.91892 -27.13465 -26.82609 -26.36946 -24.61962 -23.76125 -21.57683 -20.59144 -20.54490 -19.08828 -18.58804 -18.10962 -17.58999 -17.29710 -16.88606 -16.69589 -15.87129 -15.65555 -15.46086 -15.13166 -14.95974 -14.84775 -14.68907 -14.52181 -14.43278 -14.12953 -13.90325 -13.79536 -13.70104 -13.64175 -13.25694 -13.20373 -13.16561 -12.76289 -12.72073 -12.52688 -12.37520 -12.24820 -12.10045 -11.91622 -11.84125 -11.63543 -11.58230 -10.92885 -10.57265 -10.53625 -10.34422 -10.17450 -10.02339 -9.32030 -8.29511 -6.28279 -0.65381 -0.23736 0.31610 1.36441 1.38978 1.49887 2.02131 2.35756 2.45424 2.77414 3.07699 3.22855 3.30529 3.58960 3.84151 3.94170 4.22908 4.25261 4.26632 4.35315 4.41473 4.48085 4.50322 4.59008 4.68442 4.71766 4.79162 4.88185 4.90817 4.92087 4.93396 4.95747 5.02167 5.02728 5.08099 5.10265 5.16930 5.21617 5.30363 5.37125 5.47509 5.60271 5.76327 5.83991 5.85740 6.11024 6.15498 6.33947 6.52011 6.78737 7.37181 8.87674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021249 B = 0.002417 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.411949 B =11580.390856 C =11920.976820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.109 6.109 3 S 2.718 3.282 4 O -0.987 6.987 5 O -0.989 6.989 6 C -0.683 4.683 7 C -0.026 4.026 8 C -0.140 4.140 9 C -0.031 4.031 10 C 0.113 3.887 11 H 0.052 0.948 12 C -0.129 4.129 13 N -0.675 5.675 14 C 0.099 3.901 15 C 0.037 3.963 16 C -0.142 4.142 17 C -0.131 4.131 18 C -0.512 4.512 19 H 0.029 0.971 20 C 0.016 3.984 21 N -0.949 5.949 22 Si 0.944 3.056 23 H -0.285 1.285 24 H -0.319 1.319 25 H -0.213 1.213 26 C -0.126 4.126 27 C -0.028 4.028 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.429 0.571 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.342 0.658 38 H 0.011 0.989 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.262 0.738 47 H 0.146 0.854 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -27.053 -15.761 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.872 5.872 3 S 2.807 3.193 4 O -0.977 6.977 5 O -0.979 6.979 6 C -0.771 4.771 7 C -0.045 4.045 8 C -0.159 4.159 9 C -0.032 4.032 10 C 0.004 3.996 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.308 5.308 14 C -0.030 4.030 15 C 0.036 3.964 16 C -0.199 4.199 17 C -0.188 4.188 18 C -0.550 4.550 19 H 0.048 0.952 20 C -0.181 4.181 21 N -0.589 5.589 22 Si 0.775 3.225 23 H -0.212 1.212 24 H -0.249 1.249 25 H -0.137 1.137 26 C -0.145 4.145 27 C -0.047 4.047 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.266 0.734 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.164 0.836 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.296 -26.552 -16.194 31.186 hybrid contribution 0.577 0.945 1.015 1.502 sum -1.719 -25.607 -15.179 29.817 Atomic orbital electron populations 1.21767 0.77102 1.06153 1.02423 1.55003 1.16952 1.23568 1.91723 1.00974 0.72037 0.72847 0.73403 1.93553 1.79075 1.69712 1.55320 1.93550 1.32852 1.83948 1.87584 1.30813 1.07969 1.16880 1.21475 1.21066 0.96414 0.96010 0.90984 1.21406 0.97807 0.97824 0.98901 1.20391 0.93586 0.94182 0.95043 1.20628 0.97815 0.88626 0.92560 0.93036 1.21727 0.97698 0.99259 0.99966 1.60708 1.62983 1.00894 1.06181 1.21673 0.96676 0.92213 0.92430 1.18448 0.92952 0.92190 0.92850 1.22222 0.99316 1.00415 0.97997 1.22092 0.97214 0.98440 1.01008 1.21218 1.39463 0.93824 1.00510 0.95244 1.25806 0.97121 0.97041 0.98150 1.70114 1.45308 1.04413 1.39068 0.86340 0.78805 0.74579 0.82803 1.21219 1.24886 1.13663 1.21355 1.00715 1.00396 0.92075 1.21145 0.93635 0.91501 0.98421 0.87246 0.91435 0.91529 0.73411 0.82945 0.83625 0.91659 0.91127 0.93003 0.83837 0.97103 0.92306 0.92074 0.94326 0.94413 0.94080 0.96181 0.90815 0.92893 0.83642 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.14 127.77 1.42 1.86 16 2 N -1.11 -10.23 6.19 -206.53 -1.28 -11.51 16 3 S 2.72 46.59 5.74 -56.49 -0.32 46.27 16 4 O -0.99 -22.92 17.01 -128.00 -2.18 -25.10 16 5 O -0.99 -22.34 17.28 -128.00 -2.21 -24.55 16 6 C -0.68 -12.04 5.95 22.27 0.13 -11.91 16 7 C -0.03 -0.44 9.52 22.27 0.21 -0.23 16 8 C -0.14 -2.52 9.67 22.27 0.22 -2.31 16 9 C -0.03 -0.63 4.71 -19.87 -0.09 -0.72 16 10 C 0.11 2.57 2.82 44.17 0.12 2.69 16 11 H 0.05 1.22 7.66 -2.38 -0.02 1.20 16 12 C -0.13 -2.64 9.39 71.98 0.68 -1.97 16 13 N -0.68 -18.71 4.92 -495.44 -2.44 -21.15 16 14 C 0.10 3.58 4.37 86.30 0.38 3.96 16 15 C 0.04 1.57 0.57 -52.93 -0.03 1.54 16 16 C -0.14 -5.65 7.24 71.98 0.52 -5.13 16 17 C -0.13 -5.20 7.54 71.98 0.54 -4.66 16 18 C -0.51 -28.23 8.62 25.60 0.22 -28.01 16 19 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 20 C 0.02 0.90 5.32 84.66 0.45 1.35 16 21 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 22 Si 0.94 44.88 22.79 68.60 1.56 46.44 16 23 H -0.28 -13.31 7.10 99.48 0.71 -12.60 16 24 H -0.32 -15.61 7.11 99.48 0.71 -14.90 16 25 H -0.21 -8.87 4.65 99.48 0.46 -8.41 16 26 C -0.13 -2.44 9.01 22.27 0.20 -2.24 16 27 C -0.03 -0.50 9.52 22.27 0.21 -0.28 16 28 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.48 8.10 -2.39 -0.02 0.46 16 31 H 0.43 2.14 8.96 -96.75 -0.87 1.28 16 32 H 0.15 2.11 7.62 -2.91 -0.02 2.09 16 33 H 0.15 2.12 8.04 -2.91 -0.02 2.09 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.20 7.45 -2.39 -0.02 1.19 16 37 H 0.34 9.32 6.27 -89.69 -0.56 8.76 16 38 H 0.01 0.41 8.06 -2.39 -0.02 0.39 16 39 H 0.06 2.20 7.44 -2.39 -0.02 2.19 16 40 H 0.06 2.01 7.06 -2.39 -0.02 1.99 16 41 H 0.04 1.65 4.30 -2.39 -0.01 1.64 16 42 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.02 0.84 2.26 -2.39 -0.01 0.83 16 45 H 0.07 2.48 7.60 -2.38 -0.02 2.46 16 46 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.15 2.73 7.73 -2.91 -0.02 2.71 16 48 H 0.15 2.24 7.62 -2.91 -0.02 2.22 16 Total: -1.00 -74.66 383.40 -2.08 -76.74 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.70 Total: 18.16 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 5.18 Total: -46.05 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -3.42 Total: -91.91 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -4.39 Total: -49.65 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.56 Total: 46.44 kcal Atomic # 16 Polarization: 46.59 SS G_CDS: -0.32 Total: 46.27 kcal Total: -74.66 -2.08 -76.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414173706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.211 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds