Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46776 * 2 1 4 4 C 1.53005 * 109.46914 * 240.00239 * 2 1 3 5 5 C 1.53002 * 109.46752 * 174.99883 * 4 2 1 6 6 C 1.52995 * 109.46875 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47285 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.41529 * 89.99913 * 7 6 5 9 9 C 1.38631 * 118.41792 * 179.97438 * 8 7 6 10 10 C 1.38221 * 119.16077 * 0.25627 * 9 8 7 11 11 N 1.31860 * 120.76509 * 359.49797 * 10 9 8 12 12 C 1.31882 * 121.72556 * 0.49011 * 11 10 9 13 13 N 1.46501 * 109.47030 * 120.00496 * 2 1 3 14 14 S 1.65605 * 119.99549 * 264.99765 * 13 2 1 15 15 O 1.42099 * 104.27390 * 181.07175 * 14 13 2 16 16 O 1.42100 * 104.27948 * 308.93070 * 14 13 2 17 17 C 1.81402 * 104.44695 * 65.00305 * 14 13 2 18 18 C 1.53007 * 109.46661 * 179.97438 * 17 14 13 19 19 C 1.53000 * 109.46728 * 179.97438 * 18 17 14 20 20 C 1.50704 * 109.47118 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99615 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00189 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00101 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46804 * 60.00152 * 24 22 20 26 26 H 1.48493 * 109.47118 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46964 * 300.00470 * 24 22 20 28 28 H 1.08999 * 109.47411 * 299.99371 * 1 2 3 29 29 H 1.09004 * 109.47336 * 60.00084 * 1 2 3 30 30 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47054 * 55.00028 * 4 2 1 32 32 H 1.09001 * 109.46893 * 294.99772 * 4 2 1 33 33 H 1.08995 * 109.47078 * 60.00013 * 5 4 2 34 34 H 1.09001 * 109.47331 * 299.99621 * 5 4 2 35 35 H 1.09008 * 109.47427 * 59.99953 * 6 5 4 36 36 H 1.08998 * 109.47562 * 299.99860 * 6 5 4 37 37 H 1.07998 * 120.79161 * 359.96013 * 8 7 6 38 38 H 1.08002 * 120.41548 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.62066 * 179.74470 * 10 9 8 40 40 H 1.07993 * 119.62126 * 179.75488 * 12 11 10 41 41 H 0.96992 * 120.00154 * 85.00017 * 13 2 1 42 42 H 1.09000 * 109.47062 * 299.99325 * 17 14 13 43 43 H 1.08996 * 109.47351 * 60.00032 * 17 14 13 44 44 H 1.09000 * 109.46918 * 299.99519 * 18 17 14 45 45 H 1.08996 * 109.47125 * 60.00000 * 18 17 14 46 46 H 1.08997 * 109.47396 * 299.99836 * 19 18 17 47 47 H 1.09006 * 109.47449 * 60.00153 * 19 18 17 48 48 H 0.97006 * 120.00191 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5767 -1.2281 -2.6265 8 6 6.3752 -2.1922 -2.0300 9 6 7.7519 -2.0533 -2.1145 10 6 8.2792 -0.9633 -2.7811 11 7 7.4892 -0.0681 -3.3407 12 6 6.1755 -0.1683 -3.2807 13 7 2.0183 -0.6907 1.1961 14 16 2.4122 0.1771 2.5505 15 8 2.8606 -0.8030 3.4765 16 8 3.2875 1.1906 2.0751 17 6 0.8407 0.8987 3.0985 18 6 1.0751 1.7339 4.3589 19 6 -0.2502 2.3431 4.8208 20 6 -0.0195 3.1651 6.0626 21 1 0.9732 3.2453 6.4803 22 6 -1.0755 3.8156 6.6648 23 7 -2.2842 3.7182 6.1558 24 14 -0.7894 4.8351 8.2037 25 1 0.1779 5.9216 7.9048 26 1 -2.0757 5.4263 8.6520 27 1 -0.2428 3.9674 9.2778 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2616 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0727 -0.4261 34 1 3.8532 0.4371 -1.3574 35 1 3.6402 -0.8758 -3.4507 36 1 3.7866 -2.3852 -2.5186 37 1 5.9350 -3.0313 -1.5117 38 1 8.4042 -2.7851 -1.6611 39 1 9.3507 -0.8456 -2.8479 40 1 5.5607 0.5867 -3.7478 41 1 2.1110 -1.6562 1.1948 42 1 0.4387 1.5351 2.3102 43 1 0.1315 0.1008 3.3185 44 1 1.4770 1.0971 5.1471 45 1 1.7844 2.5318 4.1394 46 1 -0.6517 2.9798 4.0325 47 1 -0.9599 1.5453 5.0402 48 1 -3.0273 4.1756 6.5797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416534940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -76.780068 kcal Electronic energy + Delta-G solvation = -26727.950846 eV Core-core repulsion = 22908.578931 eV Total energy + Delta-G solvation = -3819.371916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48901 -37.88925 -36.82752 -35.74763 -35.00696 -34.68436 -32.47298 -32.20985 -31.41126 -29.86994 -27.85550 -26.80933 -23.88228 -23.77562 -23.29163 -21.50941 -21.29460 -20.67619 -19.32606 -17.61507 -17.40867 -16.77547 -16.68713 -16.36712 -15.76585 -15.53258 -15.33285 -14.65442 -14.56069 -14.48341 -14.28779 -14.05547 -13.78640 -13.53952 -13.36960 -13.00411 -12.56642 -12.48467 -12.28096 -12.13187 -12.05967 -11.94647 -11.84859 -11.78215 -11.60802 -11.36332 -11.24763 -11.03026 -10.93057 -10.90359 -10.82341 -10.43688 -10.09669 -9.95824 -9.77730 -9.70896 -9.34867 -9.23270 -9.09607 -8.41362 -6.06539 -4.09635 0.46849 0.78890 0.96577 2.84259 3.31606 3.35422 3.38709 3.48587 3.93866 4.10273 4.29092 4.37422 4.41744 4.44275 4.48242 4.62830 4.67351 4.75860 4.81065 4.95671 4.99723 5.13815 5.14332 5.19522 5.22844 5.29767 5.34110 5.40557 5.45962 5.50046 5.55001 5.64105 5.71345 5.79465 5.84415 5.97705 6.03083 6.06336 6.11555 6.25662 6.38994 6.43927 6.85566 6.92420 7.55381 7.65545 7.66808 7.91232 8.31845 8.96261 9.55042 11.04557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002002 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.486106 B =13980.761303 C =14573.234573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.142 3.858 3 H 0.094 0.906 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.075 4.075 9 C -0.170 4.170 10 C 0.090 3.910 11 N -0.484 5.484 12 C 0.100 3.900 13 N -1.119 6.119 14 S 2.598 3.402 15 O -0.966 6.966 16 O -0.961 6.961 17 C -0.610 4.610 18 C -0.106 4.106 19 C 0.031 3.969 20 C -0.527 4.527 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.413 0.587 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -14.249 -21.706 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.035 3.965 3 H 0.112 0.888 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.115 4.115 7 C -0.133 4.133 8 C -0.101 4.101 9 C -0.190 4.190 10 C -0.067 4.067 11 N -0.192 5.192 12 C -0.057 4.057 13 N -0.876 5.876 14 S 2.694 3.306 15 O -0.956 6.956 16 O -0.951 6.951 17 C -0.742 4.742 18 C -0.145 4.145 19 C -0.007 4.007 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.722 3.278 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.247 0.753 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.448 -13.215 -21.783 28.357 hybrid contribution -1.038 -0.551 1.264 1.726 sum 11.410 -13.766 -20.519 27.216 Atomic orbital electron populations 1.22489 0.95151 1.03101 1.03306 1.20867 0.93798 0.97013 0.84850 0.88832 1.21843 0.95537 1.01218 0.97163 1.21629 0.95209 1.01529 0.97255 1.20591 0.89731 1.01791 0.99345 1.20963 0.97361 0.96082 0.98879 1.21535 0.93598 0.98364 0.96589 1.22167 0.95957 0.99907 1.00981 1.22767 1.00092 0.90201 0.93650 1.67686 1.05619 1.27899 1.18027 1.22705 0.90844 0.96130 0.95992 1.55794 1.84283 1.19580 1.27955 1.05350 0.77638 0.74532 0.73120 1.93574 1.80206 1.59130 1.62692 1.93573 1.61762 1.60396 1.79392 1.30661 1.21118 1.12223 1.10216 1.21504 1.03620 0.97699 0.91721 1.19053 0.89799 0.95630 0.96209 1.21216 0.94601 1.30077 1.10631 0.92436 1.25018 0.95140 0.96608 0.97613 1.69946 0.99515 1.43532 1.40424 0.86610 0.77393 0.80513 0.83242 1.20109 1.21247 1.20129 0.91431 0.91160 0.91736 0.90386 0.91159 0.91363 0.91111 0.90494 0.90754 0.84881 0.84793 0.82872 0.82839 0.75319 0.85405 0.85275 0.91626 0.91596 0.96134 0.96143 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.19 2.81 -67.93 -0.19 1.00 16 3 H 0.09 0.87 7.48 -51.93 -0.39 0.48 16 4 C -0.12 -0.74 4.81 -26.73 -0.13 -0.86 16 5 C -0.12 -0.89 5.08 -26.73 -0.14 -1.03 16 6 C -0.08 -0.46 5.37 -27.88 -0.15 -0.61 16 7 C -0.13 -1.05 5.15 -104.48 -0.54 -1.59 16 8 C -0.07 -0.57 9.86 -39.28 -0.39 -0.96 16 9 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 10 C 0.09 0.77 11.18 -17.55 -0.20 0.58 16 11 N -0.48 -5.13 10.36 -13.25 -0.14 -5.27 16 12 C 0.10 0.92 10.86 -17.55 -0.19 0.73 16 13 N -1.12 -10.94 4.81 -4.89 -0.02 -10.97 16 14 S 2.60 37.21 5.44 -107.50 -0.58 36.63 16 15 O -0.97 -16.79 18.08 -57.54 -1.04 -17.83 16 16 O -0.96 -16.57 17.39 -57.54 -1.00 -17.58 16 17 C -0.61 -9.18 5.22 37.16 0.19 -8.99 16 18 C -0.11 -2.14 5.16 -26.73 -0.14 -2.27 16 19 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 20 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 24 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.07 0.59 5.78 -51.93 -0.30 0.29 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.37 8.09 -51.92 -0.42 -0.05 16 36 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.41 3.23 8.80 -34.47 -0.30 2.93 16 42 H 0.13 1.70 6.77 -51.92 -0.35 1.35 16 43 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -36.46 407.35 -11.44 -47.89 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.05 Total: -0.20 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -2.46 Total: -29.65 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.58 Total: -41.95 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -2.04 Total: -35.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 37.21 SS G_CDS: -0.58 Total: 36.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.46 -11.44 -47.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.886 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds