Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46776 * 2 1 4 4 C 1.53005 * 109.46914 * 240.00239 * 2 1 3 5 5 C 1.53002 * 109.46752 * 174.99883 * 4 2 1 6 6 C 1.52995 * 109.46875 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47285 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.41529 * 89.99913 * 7 6 5 9 9 C 1.38631 * 118.41792 * 179.97438 * 8 7 6 10 10 C 1.38221 * 119.16077 * 0.25627 * 9 8 7 11 11 N 1.31860 * 120.76509 * 359.49797 * 10 9 8 12 12 C 1.31882 * 121.72556 * 0.49011 * 11 10 9 13 13 N 1.46501 * 109.47030 * 120.00496 * 2 1 3 14 14 S 1.65605 * 119.99549 * 264.99765 * 13 2 1 15 15 O 1.42099 * 104.27390 * 181.07175 * 14 13 2 16 16 O 1.42100 * 104.27948 * 308.93070 * 14 13 2 17 17 C 1.81402 * 104.44695 * 65.00305 * 14 13 2 18 18 C 1.53007 * 109.46661 * 179.97438 * 17 14 13 19 19 C 1.53000 * 109.46728 * 179.97438 * 18 17 14 20 20 C 1.50704 * 109.47118 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99615 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00189 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00101 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46804 * 60.00152 * 24 22 20 26 26 H 1.48493 * 109.47118 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46964 * 300.00470 * 24 22 20 28 28 H 1.08999 * 109.47411 * 299.99371 * 1 2 3 29 29 H 1.09004 * 109.47336 * 60.00084 * 1 2 3 30 30 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47054 * 55.00028 * 4 2 1 32 32 H 1.09001 * 109.46893 * 294.99772 * 4 2 1 33 33 H 1.08995 * 109.47078 * 60.00013 * 5 4 2 34 34 H 1.09001 * 109.47331 * 299.99621 * 5 4 2 35 35 H 1.09008 * 109.47427 * 59.99953 * 6 5 4 36 36 H 1.08998 * 109.47562 * 299.99860 * 6 5 4 37 37 H 1.07998 * 120.79161 * 359.96013 * 8 7 6 38 38 H 1.08002 * 120.41548 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.62066 * 179.74470 * 10 9 8 40 40 H 1.07993 * 119.62126 * 179.75488 * 12 11 10 41 41 H 0.96992 * 120.00154 * 85.00017 * 13 2 1 42 42 H 1.09000 * 109.47062 * 299.99325 * 17 14 13 43 43 H 1.08996 * 109.47351 * 60.00032 * 17 14 13 44 44 H 1.09000 * 109.46918 * 299.99519 * 18 17 14 45 45 H 1.08996 * 109.47125 * 60.00000 * 18 17 14 46 46 H 1.08997 * 109.47396 * 299.99836 * 19 18 17 47 47 H 1.09006 * 109.47449 * 60.00153 * 19 18 17 48 48 H 0.97006 * 120.00191 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5767 -1.2281 -2.6265 8 6 6.3752 -2.1922 -2.0300 9 6 7.7519 -2.0533 -2.1145 10 6 8.2792 -0.9633 -2.7811 11 7 7.4892 -0.0681 -3.3407 12 6 6.1755 -0.1683 -3.2807 13 7 2.0183 -0.6907 1.1961 14 16 2.4122 0.1771 2.5505 15 8 2.8606 -0.8030 3.4765 16 8 3.2875 1.1906 2.0751 17 6 0.8407 0.8987 3.0985 18 6 1.0751 1.7339 4.3589 19 6 -0.2502 2.3431 4.8208 20 6 -0.0195 3.1651 6.0626 21 1 0.9732 3.2453 6.4803 22 6 -1.0755 3.8156 6.6648 23 7 -2.2842 3.7182 6.1558 24 14 -0.7894 4.8351 8.2037 25 1 0.1779 5.9216 7.9048 26 1 -2.0757 5.4263 8.6520 27 1 -0.2428 3.9674 9.2778 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2616 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0727 -0.4261 34 1 3.8532 0.4371 -1.3574 35 1 3.6402 -0.8758 -3.4507 36 1 3.7866 -2.3852 -2.5186 37 1 5.9350 -3.0313 -1.5117 38 1 8.4042 -2.7851 -1.6611 39 1 9.3507 -0.8456 -2.8479 40 1 5.5607 0.5867 -3.7478 41 1 2.1110 -1.6562 1.1948 42 1 0.4387 1.5351 2.3102 43 1 0.1315 0.1008 3.3185 44 1 1.4770 1.0971 5.1471 45 1 1.7844 2.5318 4.1394 46 1 -0.6517 2.9798 4.0325 47 1 -0.9599 1.5453 5.0402 48 1 -3.0273 4.1756 6.5797 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416534940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -101.346079 kcal Electronic energy + Delta-G solvation = -26729.016108 eV Core-core repulsion = 22908.578931 eV Total energy + Delta-G solvation = -3820.437178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07615 -38.62510 -38.04758 -37.04420 -36.48630 -35.60683 -34.18058 -33.07299 -32.06868 -30.57232 -29.64030 -27.38334 -25.61437 -24.48018 -23.94928 -22.43958 -22.10567 -21.85293 -20.44926 -18.78957 -18.53003 -17.98241 -17.45593 -17.33570 -17.15107 -16.54083 -16.35939 -16.09005 -15.71266 -15.28251 -15.15281 -14.71457 -14.52189 -14.46351 -14.19389 -14.11684 -13.92902 -13.65616 -13.40724 -13.22716 -13.14848 -13.06371 -13.00390 -12.80615 -12.73355 -12.66320 -12.53868 -12.33543 -12.16039 -11.91190 -11.76350 -11.64935 -11.45638 -11.38319 -11.11614 -10.70061 -10.57684 -10.39424 -10.31909 -9.82147 -8.23212 -6.34200 -0.72058 0.19659 0.36858 1.39542 1.41990 1.49958 1.81483 2.39175 2.75808 2.87453 3.10069 3.23821 3.55802 3.69009 3.76294 3.90824 3.91543 3.94888 4.10954 4.11313 4.19675 4.24391 4.36383 4.37549 4.46660 4.59288 4.64106 4.69361 4.73581 4.86282 4.90135 4.96061 4.98090 5.04811 5.06089 5.13504 5.15970 5.22813 5.39267 5.43479 5.45966 5.51169 5.54736 5.62207 5.78542 5.83254 6.19019 6.21306 6.80874 7.05020 7.34905 8.87853 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002002 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.486106 B =13980.761303 C =14573.234573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.069 4.069 7 C -0.136 4.136 8 C -0.086 4.086 9 C -0.172 4.172 10 C 0.071 3.929 11 N -0.518 5.518 12 C 0.079 3.921 13 N -1.100 6.100 14 S 2.625 3.375 15 O -0.996 6.996 16 O -0.991 6.991 17 C -0.611 4.611 18 C -0.107 4.107 19 C 0.033 3.967 20 C -0.554 4.554 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.268 1.268 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.426 0.574 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.004 0.996 47 H 0.003 0.997 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.204 -15.480 -22.411 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.027 3.973 3 H 0.100 0.900 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.107 4.107 7 C -0.138 4.138 8 C -0.112 4.112 9 C -0.192 4.192 10 C -0.085 4.085 11 N -0.227 5.227 12 C -0.077 4.077 13 N -0.863 5.863 14 S 2.720 3.280 15 O -0.986 6.986 16 O -0.981 6.981 17 C -0.742 4.742 18 C -0.146 4.146 19 C -0.006 4.006 20 C -0.592 4.592 21 H 0.077 0.923 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.787 3.213 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.193 1.193 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.171 0.829 38 H 0.176 0.824 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.263 0.737 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.282 -14.454 -22.483 29.415 hybrid contribution -0.986 -0.201 1.414 1.736 sum 11.296 -14.655 -21.069 28.040 Atomic orbital electron populations 1.22505 0.94172 1.04046 1.03419 1.21116 0.94577 0.96691 0.84918 0.90048 1.21837 0.94344 1.02316 0.96524 1.21603 0.96276 1.00419 0.97377 1.20584 0.88297 1.02734 0.99083 1.21213 0.98603 0.95670 0.98330 1.21910 0.93879 0.98922 0.96493 1.22477 0.96481 0.99883 1.00324 1.23162 1.00964 0.90493 0.93908 1.67656 1.06554 1.29160 1.19297 1.22991 0.90781 0.97104 0.96827 1.55366 1.84016 1.20071 1.26805 1.04282 0.76708 0.73765 0.73247 1.93527 1.80757 1.59826 1.64498 1.93538 1.62745 1.61798 1.80006 1.30640 1.22660 1.12491 1.08365 1.21312 1.00800 0.98320 0.94152 1.18945 0.91922 0.94715 0.94987 1.21710 0.94858 1.30740 1.11913 0.92297 1.25927 0.94872 0.97803 1.00945 1.70059 1.00331 1.44443 1.41943 0.85542 0.77614 0.78950 0.79226 1.19287 1.20544 1.19289 0.92859 0.89588 0.90378 0.88310 0.89183 0.92910 0.92990 0.89076 0.89057 0.82911 0.82410 0.81221 0.81913 0.73706 0.83700 0.83522 0.91756 0.91736 0.97793 0.97840 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.48 71.98 0.68 -1.62 16 2 C 0.13 1.95 2.81 44.99 0.13 2.08 16 3 H 0.08 1.42 7.48 -2.39 -0.02 1.41 16 4 C -0.11 -1.04 4.81 30.60 0.15 -0.90 16 5 C -0.12 -1.58 5.08 30.59 0.16 -1.42 16 6 C -0.07 -0.68 5.37 29.85 0.16 -0.52 16 7 C -0.14 -2.04 5.15 -19.77 -0.10 -2.14 16 8 C -0.09 -1.20 9.86 22.47 0.22 -0.98 16 9 C -0.17 -2.38 10.11 22.36 0.23 -2.16 16 10 C 0.07 1.21 11.18 84.68 0.95 2.16 16 11 N -0.52 -11.15 10.36 -195.85 -2.03 -13.18 16 12 C 0.08 1.45 10.86 84.67 0.92 2.37 16 13 N -1.10 -19.59 4.81 -169.38 -0.82 -20.41 16 14 S 2.63 73.50 5.44 -56.49 -0.31 73.19 16 15 O -1.00 -34.04 18.08 -127.65 -2.31 -36.34 16 16 O -0.99 -34.07 17.39 -127.65 -2.22 -36.29 16 17 C -0.61 -18.06 5.22 71.98 0.38 -17.69 16 18 C -0.11 -4.35 5.16 30.60 0.16 -4.19 16 19 C 0.03 1.67 4.97 29.85 0.15 1.82 16 20 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 21 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 22 C 0.00 0.17 5.46 84.65 0.46 0.63 16 23 N -0.93 -55.44 13.29 21.44 0.28 -55.15 16 24 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H 0.05 0.83 5.78 -2.39 -0.01 0.82 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.86 7.75 -2.39 -0.02 0.84 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.65 8.09 -2.38 -0.02 0.63 16 36 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.43 5.65 8.80 -96.75 -0.85 4.80 16 42 H 0.14 3.75 6.77 -2.39 -0.02 3.74 16 43 H 0.15 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 48 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -79.67 407.35 -0.42 -80.09 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.08 Total: 15.77 kcal Atomic # 6 Polarization: -58.79 SS G_CDS: 4.86 Total: -53.93 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -2.56 Total: -88.74 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -4.53 Total: -72.64 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 73.50 SS G_CDS: -0.31 Total: 73.19 kcal Total: -79.67 -0.42 -80.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.257 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds