Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47540 * 2 1 4 4 N 1.46907 * 109.46858 * 119.99662 * 2 1 3 5 5 C 1.46900 * 110.99867 * 56.04906 * 4 2 1 6 6 C 1.46898 * 110.99883 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47122 * 170.00044 * 6 4 2 8 8 H 1.09004 * 109.47272 * 64.99976 * 7 6 4 9 9 C 1.53003 * 109.47473 * 185.00075 * 7 6 4 10 10 N 1.46496 * 109.47502 * 305.00355 * 7 6 4 11 11 S 1.65600 * 120.00572 * 144.99604 * 10 7 6 12 12 O 1.42097 * 106.40227 * 311.46495 * 11 10 7 13 13 O 1.42098 * 106.40314 * 178.53832 * 11 10 7 14 14 C 1.76200 * 107.21533 * 65.00321 * 11 10 7 15 15 C 1.38657 * 119.87534 * 269.97735 * 14 11 10 16 16 C 1.38611 * 120.50450 * 180.02562 * 15 14 11 17 17 C 1.37644 * 120.24502 * 0.02562 * 16 15 14 18 18 C 1.40691 * 119.74527 * 359.97438 * 17 16 15 19 19 C 1.41396 * 120.24245 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99598 * 150.21707 * 19 18 17 21 21 C 1.39943 * 120.00268 * 330.22360 * 19 18 17 22 22 N 1.30825 * 119.99976 * 161.72740 * 21 19 18 23 23 Si 1.86793 * 119.99780 * 341.72399 * 21 19 18 24 24 H 1.48503 * 109.47344 * 95.41200 * 23 21 19 25 25 H 1.48503 * 109.46947 * 215.41231 * 23 21 19 26 26 H 1.48503 * 109.47306 * 335.41258 * 23 21 19 27 27 C 1.37596 * 119.87915 * 90.00065 * 14 11 10 28 28 H 1.09002 * 109.47152 * 300.00208 * 1 2 3 29 29 H 1.09000 * 109.46505 * 60.00095 * 1 2 3 30 30 H 1.08992 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47076 * 239.99496 * 2 1 3 32 32 H 1.09004 * 109.47114 * 59.99199 * 3 2 1 33 33 H 1.08990 * 109.47426 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46562 * 300.00256 * 3 2 1 35 35 H 1.08999 * 109.46987 * 183.95478 * 5 4 2 36 36 H 1.09005 * 109.46755 * 303.95011 * 5 4 2 37 37 H 1.08997 * 109.47537 * 63.95049 * 5 4 2 38 38 H 1.08999 * 109.47197 * 50.00493 * 6 4 2 39 39 H 1.08995 * 109.47470 * 290.00559 * 6 4 2 40 40 H 1.08994 * 109.47237 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.46991 * 300.00379 * 9 7 6 42 42 H 1.09000 * 109.46804 * 60.00211 * 9 7 6 43 43 H 0.97008 * 119.99776 * 325.00156 * 10 7 6 44 44 H 1.08003 * 119.74856 * 0.02562 * 15 14 11 45 45 H 1.08002 * 119.87783 * 179.97438 * 16 15 14 46 46 H 1.07997 * 120.12108 * 180.02562 * 17 16 15 47 47 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.12593 * 0.25677 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 1.4730 -2.0535 1.2817 6 6 3.4881 -0.7126 1.2332 7 6 3.9601 -1.2124 2.6000 8 1 3.6544 -2.2502 2.7329 9 6 5.4850 -1.1158 2.6798 10 7 3.3629 -0.3888 3.6541 11 16 2.9356 -1.0753 5.0993 12 8 2.1920 -2.2443 4.7840 13 8 2.4253 -0.0239 5.9076 14 6 4.4196 -1.6237 5.8751 15 6 4.8888 -2.9069 5.6391 16 6 6.0544 -3.3520 6.2429 17 6 6.7592 -2.5226 7.0854 18 6 6.2925 -1.2184 7.3322 19 6 7.0085 -0.3573 8.1955 20 1 6.9774 0.7110 8.0400 21 6 7.7574 -0.8893 9.2512 22 7 8.6878 -0.1679 9.8218 23 14 7.4287 -2.6294 9.8456 24 1 8.3729 -3.5653 9.1838 25 1 7.6176 -2.6937 11.3171 26 1 6.0341 -3.0125 9.5084 27 6 5.1082 -0.7772 6.7132 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.7948 -2.5186 2.2135 36 1 0.3841 -2.0099 1.2545 37 1 1.8342 -2.6417 0.4382 38 1 3.8693 0.2943 1.0632 39 1 3.8604 -1.3783 0.4546 40 1 5.8211 -1.4715 3.6537 41 1 5.9293 -1.7286 1.8955 42 1 5.7907 -0.0780 2.5471 43 1 3.2176 0.5587 3.5055 44 1 4.3419 -3.5647 4.9797 45 1 6.4105 -4.3537 6.0522 46 1 7.6673 -2.8713 7.5545 47 1 9.2071 -0.5368 10.5533 48 1 4.7385 0.2204 6.8993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589296728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -57.390371 kcal Electronic energy + Delta-G solvation = -28694.519646 eV Core-core repulsion = 24875.988531 eV Total energy + Delta-G solvation = -3818.531115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -38.93866 -37.93593 -36.69173 -35.84129 -35.29029 -33.78354 -31.95175 -30.74286 -30.15870 -29.97226 -28.41735 -25.93271 -25.37860 -24.45465 -22.35702 -21.19797 -20.85942 -20.07619 -19.22539 -18.08108 -17.09631 -16.38993 -16.28445 -16.02098 -15.32180 -15.10512 -14.94790 -14.73852 -14.45408 -14.00300 -13.84558 -13.24190 -13.15922 -12.99793 -12.87716 -12.72614 -12.42284 -12.38552 -12.21974 -12.05478 -11.86465 -11.74573 -11.69441 -11.63901 -11.47365 -11.38312 -11.37110 -11.14450 -11.03376 -10.80005 -10.73637 -10.58457 -10.32475 -10.00029 -9.77514 -9.35533 -9.11306 -8.40018 -8.25858 -7.87352 -7.09000 -4.64153 1.01003 1.92811 2.41429 2.98921 3.11420 3.20713 3.50499 3.75626 3.85364 4.16746 4.38381 4.62677 4.74304 4.81174 4.97121 5.05557 5.11202 5.15970 5.27998 5.34451 5.35826 5.44499 5.45503 5.60594 5.62873 5.64824 5.67211 5.77340 5.82405 5.94206 5.96710 6.00972 6.05215 6.14423 6.20408 6.30794 6.42843 6.46500 6.59843 6.86589 6.96426 7.00325 7.07738 7.19952 7.34526 7.39823 7.62135 7.77573 8.18150 8.42655 8.61512 9.92946 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.003052 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.940148 B = 9170.971386 C = 9261.379302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.149 4.149 4 N -0.531 5.531 5 C 0.011 3.989 6 C 0.047 3.953 7 C 0.157 3.843 8 H 0.088 0.912 9 C -0.179 4.179 10 N -1.099 6.099 11 S 2.692 3.308 12 O -0.973 6.973 13 O -0.972 6.972 14 C -0.625 4.625 15 C -0.157 4.157 16 C -0.092 4.092 17 C -0.199 4.199 18 C 0.074 3.926 19 C -0.443 4.443 20 H 0.095 0.905 21 C 0.084 3.916 22 N -0.801 5.801 23 Si 0.906 3.094 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.243 1.243 27 C -0.101 4.101 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.415 0.585 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.287 0.713 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -1.350 -17.686 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.206 4.206 4 N -0.256 5.256 5 C -0.137 4.137 6 C -0.083 4.083 7 C 0.049 3.951 8 H 0.106 0.894 9 C -0.238 4.238 10 N -0.857 5.857 11 S 2.786 3.214 12 O -0.963 6.963 13 O -0.962 6.962 14 C -0.716 4.716 15 C -0.178 4.178 16 C -0.112 4.112 17 C -0.219 4.219 18 C 0.070 3.930 19 C -0.471 4.471 20 H 0.113 0.887 21 C -0.136 4.136 22 N -0.424 5.424 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.166 1.166 27 C -0.122 4.122 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.250 0.750 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.098 0.902 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.025 -1.245 -16.746 19.064 hybrid contribution 1.190 -0.917 -0.262 1.524 sum -7.836 -2.162 -17.008 18.851 Atomic orbital electron populations 1.21923 0.94411 1.02087 1.02170 1.21619 0.95697 0.95080 0.90897 1.21926 1.01082 0.95339 1.02256 1.61987 1.07532 1.17581 1.38485 1.22612 1.00881 0.88511 1.01715 1.22513 0.87834 1.01992 0.95931 1.20724 0.92671 0.94913 0.86831 0.89364 1.22398 0.94712 1.02729 1.03951 1.55308 1.79963 1.20530 1.29928 1.01627 0.74381 0.73193 0.72233 1.93496 1.68975 1.49881 1.83930 1.93545 1.78659 1.56703 1.67343 1.30056 1.22538 1.04188 1.14784 1.20023 0.98564 0.94116 1.05135 1.20692 0.95234 0.97955 0.97272 1.21290 1.01001 0.96592 1.02999 1.17782 0.90724 0.91938 0.92556 1.19520 1.21999 0.96362 1.09254 0.88701 1.26155 0.91762 0.99961 0.95713 1.69680 1.14169 1.39075 1.19496 0.86377 0.81916 0.81464 0.77039 1.19460 1.21365 1.16618 1.20839 0.94302 0.98549 0.98476 0.91582 0.92462 0.92422 0.94582 0.91501 0.92432 0.92452 0.89714 0.91040 0.96022 0.89599 0.93832 0.90203 0.91935 0.91948 0.75040 0.87221 0.88029 0.87709 0.90204 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C 0.08 0.66 2.68 -67.71 -0.18 0.48 16 3 C -0.15 -1.17 8.99 37.16 0.33 -0.83 16 4 N -0.53 -5.55 4.36 -234.89 -1.02 -6.57 16 5 C 0.01 0.11 8.95 60.06 0.54 0.65 16 6 C 0.05 0.46 4.39 -3.83 -0.02 0.44 16 7 C 0.16 1.85 2.68 -67.93 -0.18 1.67 16 8 H 0.09 1.10 6.16 -51.93 -0.32 0.78 16 9 C -0.18 -2.09 9.52 37.16 0.35 -1.74 16 10 N -1.10 -14.91 5.20 -4.89 -0.03 -14.93 16 11 S 2.69 48.12 5.71 -107.50 -0.61 47.51 16 12 O -0.97 -18.58 16.17 -57.17 -0.92 -19.50 16 13 O -0.97 -20.16 17.26 -57.17 -0.99 -21.14 16 14 C -0.63 -12.63 5.05 -39.66 -0.20 -12.83 16 15 C -0.16 -3.08 8.59 -39.29 -0.34 -3.42 16 16 C -0.09 -1.87 10.02 -39.66 -0.40 -2.27 16 17 C -0.20 -4.55 7.18 -38.87 -0.28 -4.83 16 18 C 0.07 1.80 5.10 -106.83 -0.55 1.26 16 19 C -0.44 -11.56 9.57 -37.74 -0.36 -11.93 16 20 H 0.10 2.57 8.06 -52.48 -0.42 2.15 16 21 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 22 N -0.80 -20.67 13.93 55.55 0.77 -19.90 16 23 Si 0.91 20.13 24.52 -169.99 -4.17 15.96 16 24 H -0.27 -5.70 6.71 56.52 0.38 -5.32 16 25 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.24 -5.59 6.86 56.52 0.39 -5.21 16 27 C -0.10 -2.28 9.26 -38.87 -0.36 -2.64 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 6.26 -51.93 -0.32 0.14 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.43 6.20 -51.93 -0.32 0.11 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 1.07 6.14 -51.93 -0.32 0.76 16 36 H 0.07 0.73 6.01 -51.93 -0.31 0.41 16 37 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.76 5.83 -51.93 -0.30 0.45 16 39 H 0.04 0.39 8.12 -51.93 -0.42 -0.04 16 40 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.42 4.96 8.84 -34.47 -0.30 4.65 16 44 H 0.11 1.91 7.60 -52.48 -0.40 1.51 16 45 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.11 2.36 4.73 -52.49 -0.25 2.12 16 47 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 48 H 0.12 2.61 7.60 -52.49 -0.40 2.22 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -29.78 383.24 -9.99 -39.76 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.39 Total: 7.87 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: -1.40 Total: -34.83 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.27 Total: -41.40 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.91 Total: -40.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.17 Total: 15.96 kcal Atomic # 16 Polarization: 48.12 SS G_CDS: -0.61 Total: 47.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.78 -9.99 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589296728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.630 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds