Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47540 * 2 1 4 4 N 1.46907 * 109.46858 * 119.99662 * 2 1 3 5 5 C 1.46900 * 110.99867 * 56.04906 * 4 2 1 6 6 C 1.46898 * 110.99883 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47122 * 170.00044 * 6 4 2 8 8 H 1.09004 * 109.47272 * 64.99976 * 7 6 4 9 9 C 1.53003 * 109.47473 * 185.00075 * 7 6 4 10 10 N 1.46496 * 109.47502 * 305.00355 * 7 6 4 11 11 S 1.65600 * 120.00572 * 144.99604 * 10 7 6 12 12 O 1.42097 * 106.40227 * 311.46495 * 11 10 7 13 13 O 1.42098 * 106.40314 * 178.53832 * 11 10 7 14 14 C 1.76200 * 107.21533 * 65.00321 * 11 10 7 15 15 C 1.38657 * 119.87534 * 269.97735 * 14 11 10 16 16 C 1.38611 * 120.50450 * 180.02562 * 15 14 11 17 17 C 1.37644 * 120.24502 * 0.02562 * 16 15 14 18 18 C 1.40691 * 119.74527 * 359.97438 * 17 16 15 19 19 C 1.41396 * 120.24245 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99598 * 150.21707 * 19 18 17 21 21 C 1.39943 * 120.00268 * 330.22360 * 19 18 17 22 22 N 1.30825 * 119.99976 * 161.72740 * 21 19 18 23 23 Si 1.86793 * 119.99780 * 341.72399 * 21 19 18 24 24 H 1.48503 * 109.47344 * 95.41200 * 23 21 19 25 25 H 1.48503 * 109.46947 * 215.41231 * 23 21 19 26 26 H 1.48503 * 109.47306 * 335.41258 * 23 21 19 27 27 C 1.37596 * 119.87915 * 90.00065 * 14 11 10 28 28 H 1.09002 * 109.47152 * 300.00208 * 1 2 3 29 29 H 1.09000 * 109.46505 * 60.00095 * 1 2 3 30 30 H 1.08992 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47076 * 239.99496 * 2 1 3 32 32 H 1.09004 * 109.47114 * 59.99199 * 3 2 1 33 33 H 1.08990 * 109.47426 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46562 * 300.00256 * 3 2 1 35 35 H 1.08999 * 109.46987 * 183.95478 * 5 4 2 36 36 H 1.09005 * 109.46755 * 303.95011 * 5 4 2 37 37 H 1.08997 * 109.47537 * 63.95049 * 5 4 2 38 38 H 1.08999 * 109.47197 * 50.00493 * 6 4 2 39 39 H 1.08995 * 109.47470 * 290.00559 * 6 4 2 40 40 H 1.08994 * 109.47237 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.46991 * 300.00379 * 9 7 6 42 42 H 1.09000 * 109.46804 * 60.00211 * 9 7 6 43 43 H 0.97008 * 119.99776 * 325.00156 * 10 7 6 44 44 H 1.08003 * 119.74856 * 0.02562 * 15 14 11 45 45 H 1.08002 * 119.87783 * 179.97438 * 16 15 14 46 46 H 1.07997 * 120.12108 * 180.02562 * 17 16 15 47 47 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.12593 * 0.25677 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 1.4730 -2.0535 1.2817 6 6 3.4881 -0.7126 1.2332 7 6 3.9601 -1.2124 2.6000 8 1 3.6544 -2.2502 2.7329 9 6 5.4850 -1.1158 2.6798 10 7 3.3629 -0.3888 3.6541 11 16 2.9356 -1.0753 5.0993 12 8 2.1920 -2.2443 4.7840 13 8 2.4253 -0.0239 5.9076 14 6 4.4196 -1.6237 5.8751 15 6 4.8888 -2.9069 5.6391 16 6 6.0544 -3.3520 6.2429 17 6 6.7592 -2.5226 7.0854 18 6 6.2925 -1.2184 7.3322 19 6 7.0085 -0.3573 8.1955 20 1 6.9774 0.7110 8.0400 21 6 7.7574 -0.8893 9.2512 22 7 8.6878 -0.1679 9.8218 23 14 7.4287 -2.6294 9.8456 24 1 8.3729 -3.5653 9.1838 25 1 7.6176 -2.6937 11.3171 26 1 6.0341 -3.0125 9.5084 27 6 5.1082 -0.7772 6.7132 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.7948 -2.5186 2.2135 36 1 0.3841 -2.0099 1.2545 37 1 1.8342 -2.6417 0.4382 38 1 3.8693 0.2943 1.0632 39 1 3.8604 -1.3783 0.4546 40 1 5.8211 -1.4715 3.6537 41 1 5.9293 -1.7286 1.8955 42 1 5.7907 -0.0780 2.5471 43 1 3.2176 0.5587 3.5055 44 1 4.3419 -3.5647 4.9797 45 1 6.4105 -4.3537 6.0522 46 1 7.6673 -2.8713 7.5545 47 1 9.2071 -0.5368 10.5533 48 1 4.7385 0.2204 6.8993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589296728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -78.716853 kcal Electronic energy + Delta-G solvation = -28695.444432 eV Core-core repulsion = 24875.988531 eV Total energy + Delta-G solvation = -3819.455901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.78388 -39.63569 -38.21265 -36.85422 -36.81091 -35.62594 -32.73128 -32.52743 -31.86246 -30.98116 -29.15390 -27.23050 -26.64806 -25.25775 -24.05507 -22.69020 -22.05951 -20.79077 -20.68246 -19.70962 -18.52824 -18.04433 -17.34412 -17.01651 -16.91853 -16.62505 -16.15802 -15.87051 -15.57222 -15.38415 -14.88263 -14.73321 -14.66773 -14.21843 -14.08373 -13.86710 -13.65916 -13.40719 -13.34820 -13.19279 -13.13557 -13.04712 -13.02486 -12.88355 -12.84230 -12.58335 -12.55208 -12.38743 -12.35543 -12.02955 -11.85905 -11.77379 -11.57411 -11.51307 -11.36009 -11.05002 -10.36073 -9.95234 -9.66143 -9.14123 -8.96403 -6.58463 -0.45856 0.21410 0.66766 1.20496 1.35892 1.42917 2.04178 2.16309 2.44956 2.81358 2.99778 3.32417 3.50431 3.82564 4.05173 4.12208 4.19239 4.22586 4.34885 4.39822 4.41016 4.46807 4.52527 4.57298 4.63442 4.76479 4.77823 4.83299 4.85918 4.90880 4.98553 5.00611 5.01957 5.08309 5.10747 5.22968 5.32224 5.37686 5.39198 5.45813 5.47172 5.47890 5.64896 5.77820 6.00771 6.17627 6.25495 6.28167 6.30784 6.59813 6.70661 8.12015 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.003052 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.940148 B = 9170.971386 C = 9261.379302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 C -0.147 4.147 4 N -0.547 5.547 5 C 0.011 3.989 6 C 0.051 3.949 7 C 0.152 3.848 8 H 0.086 0.914 9 C -0.177 4.177 10 N -1.085 6.085 11 S 2.714 3.286 12 O -0.979 6.979 13 O -1.003 7.003 14 C -0.629 4.629 15 C -0.136 4.136 16 C -0.094 4.094 17 C -0.204 4.204 18 C 0.057 3.943 19 C -0.484 4.484 20 H 0.060 0.940 21 C 0.049 3.951 22 N -0.843 5.843 23 Si 0.955 3.045 24 H -0.247 1.247 25 H -0.275 1.275 26 H -0.256 1.256 27 C -0.120 4.120 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.425 0.575 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.108 0.892 47 H 0.296 0.704 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 -3.581 -20.464 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 C -0.204 4.204 4 N -0.272 5.272 5 C -0.137 4.137 6 C -0.078 4.078 7 C 0.045 3.955 8 H 0.104 0.896 9 C -0.236 4.236 10 N -0.846 5.846 11 S 2.806 3.194 12 O -0.969 6.969 13 O -0.993 6.993 14 C -0.717 4.717 15 C -0.157 4.157 16 C -0.113 4.113 17 C -0.224 4.224 18 C 0.053 3.947 19 C -0.513 4.513 20 H 0.078 0.922 21 C -0.166 4.166 22 N -0.469 5.469 23 Si 0.778 3.222 24 H -0.172 1.172 25 H -0.202 1.202 26 H -0.180 1.180 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.261 0.739 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.770 -3.477 -19.520 22.104 hybrid contribution 1.260 -0.256 0.328 1.327 sum -8.510 -3.733 -19.192 21.323 Atomic orbital electron populations 1.21916 0.94198 1.02095 1.02253 1.21680 0.95907 0.95337 0.90406 1.21917 1.01331 0.94804 1.02370 1.61973 1.07901 1.17523 1.39774 1.22562 1.01085 0.88879 1.01175 1.22483 0.87662 1.03009 0.94668 1.20949 0.92708 0.94564 0.87268 0.89590 1.22371 0.94549 1.03538 1.03147 1.54995 1.79790 1.21281 1.28581 1.00933 0.73405 0.72586 0.72495 1.93488 1.68766 1.50479 1.84171 1.93504 1.79118 1.57575 1.69108 1.30474 1.22970 1.04271 1.14011 1.20541 0.97849 0.93788 1.03505 1.21141 0.94880 0.99396 0.95887 1.21479 1.01392 0.96121 1.03406 1.17910 0.91233 0.92820 0.92716 1.19482 1.24955 0.95168 1.11718 0.92150 1.26782 0.91307 1.03185 0.95341 1.69706 1.15511 1.40827 1.20826 0.85636 0.81185 0.77979 0.77378 1.17190 1.20174 1.18002 1.20834 0.94578 0.98948 0.99765 0.92861 0.91024 0.92458 0.93796 0.92600 0.92003 0.91175 0.91727 0.90909 0.94682 0.88461 0.92061 0.93010 0.89537 0.91396 0.73864 0.84122 0.83962 0.87464 0.89377 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 71.98 0.64 -1.45 16 2 C 0.07 1.10 2.68 44.92 0.12 1.22 16 3 C -0.15 -1.94 8.99 71.98 0.65 -1.29 16 4 N -0.55 -10.04 4.36 -897.05 -3.91 -13.95 16 5 C 0.01 0.21 8.95 127.69 1.14 1.35 16 6 C 0.05 0.84 4.39 86.30 0.38 1.21 16 7 C 0.15 3.20 2.68 44.99 0.12 3.32 16 8 H 0.09 1.89 6.16 -2.39 -0.01 1.87 16 9 C -0.18 -3.69 9.52 71.98 0.69 -3.00 16 10 N -1.08 -27.72 5.20 -169.39 -0.88 -28.60 16 11 S 2.71 94.13 5.71 -56.49 -0.32 93.81 16 12 O -0.98 -35.44 16.17 -128.00 -2.07 -37.51 16 13 O -1.00 -41.62 17.26 -128.00 -2.21 -43.83 16 14 C -0.63 -24.80 5.05 22.22 0.11 -24.69 16 15 C -0.14 -4.95 8.59 22.46 0.19 -4.75 16 16 C -0.09 -3.53 10.02 22.22 0.22 -3.31 16 17 C -0.20 -9.12 7.18 22.73 0.16 -8.96 16 18 C 0.06 2.83 5.10 -21.29 -0.11 2.72 16 19 C -0.48 -26.76 9.57 23.46 0.22 -26.54 16 20 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 21 C 0.05 2.59 5.40 85.26 0.46 3.05 16 22 N -0.84 -45.41 13.93 21.83 0.30 -45.11 16 23 Si 0.96 41.47 24.52 68.60 1.68 43.15 16 24 H -0.25 -9.78 6.71 99.48 0.67 -9.11 16 25 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.26 -11.52 6.86 99.48 0.68 -10.84 16 27 C -0.12 -5.58 9.26 22.73 0.21 -5.37 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.81 6.26 -2.39 -0.01 0.79 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.76 6.20 -2.39 -0.01 0.74 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.50 6.14 -2.39 -0.01 1.49 16 36 H 0.07 1.35 6.01 -2.38 -0.01 1.33 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 1.39 5.83 -2.39 -0.01 1.38 16 39 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 40 H 0.05 1.38 6.17 -2.39 -0.01 1.37 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.42 9.55 8.84 -96.74 -0.85 8.70 16 44 H 0.14 4.28 7.60 -2.91 -0.02 4.26 16 45 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 46 H 0.11 4.69 4.73 -2.91 -0.01 4.68 16 47 H 0.30 14.25 8.30 -92.71 -0.77 13.48 16 48 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -66.16 383.24 -2.14 -68.31 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.05 Total: 30.21 kcal Atomic # 6 Polarization: -71.68 SS G_CDS: 5.21 Total: -66.48 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -4.48 Total: -87.66 kcal Atomic # 8 Polarization: -77.07 SS G_CDS: -4.28 Total: -81.35 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.68 Total: 43.15 kcal Atomic # 16 Polarization: 94.13 SS G_CDS: -0.32 Total: 93.81 kcal Total: -66.16 -2.14 -68.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589296728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.411 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds