Wall clock time and date at job start Sat Apr 11 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46992 * 2 1 4 4 C 1.53003 * 109.47168 * 240.00000 * 2 1 3 5 5 C 1.50703 * 109.47139 * 64.99876 * 4 2 1 6 6 H 1.07999 * 120.00033 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00291 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99759 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46898 * 90.00521 * 9 7 5 11 11 H 1.48501 * 109.47153 * 210.00193 * 9 7 5 12 12 H 1.48495 * 109.47515 * 330.00167 * 9 7 5 13 13 C 1.52992 * 109.47432 * 120.00007 * 2 1 3 14 14 N 1.46896 * 109.47800 * 183.38481 * 13 2 1 15 15 C 1.46900 * 110.99834 * 71.62703 * 14 13 2 16 16 C 1.46894 * 111.00814 * 195.58128 * 14 13 2 17 17 H 1.09001 * 109.47159 * 300.00257 * 16 14 13 18 18 C 1.53002 * 109.46657 * 59.99902 * 16 14 13 19 19 C 1.50695 * 109.47679 * 179.97438 * 16 14 13 20 20 C 1.38251 * 120.00105 * 320.02681 * 19 16 14 21 21 C 1.38213 * 120.00178 * 179.97438 * 20 19 16 22 22 C 1.38254 * 120.00018 * 359.97438 * 21 20 19 23 23 C 1.38216 * 119.99746 * 359.75087 * 22 21 20 24 24 S 1.76200 * 119.99798 * 180.27678 * 23 22 21 25 25 N 1.65596 * 107.21755 * 270.23035 * 24 23 22 26 26 O 1.42101 * 106.40577 * 23.77091 * 24 23 22 27 27 O 1.42095 * 106.40202 * 156.69120 * 24 23 22 28 28 C 1.38208 * 120.00133 * 139.99688 * 19 16 14 29 29 H 1.08995 * 109.47227 * 294.48868 * 1 2 3 30 30 H 1.08999 * 109.47241 * 54.49059 * 1 2 3 31 31 H 1.09006 * 109.47049 * 174.48452 * 1 2 3 32 32 H 1.08997 * 109.47195 * 184.99438 * 4 2 1 33 33 H 1.08992 * 109.47281 * 304.99982 * 4 2 1 34 34 H 0.96996 * 120.00200 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46918 * 63.38324 * 13 2 1 36 36 H 1.09003 * 109.47227 * 303.39219 * 13 2 1 37 37 H 1.08998 * 109.47158 * 185.89918 * 15 14 13 38 38 H 1.09008 * 109.47080 * 305.89569 * 15 14 13 39 39 H 1.09001 * 109.47187 * 65.89692 * 15 14 13 40 40 H 1.08999 * 109.47400 * 299.99736 * 18 16 14 41 41 H 1.08994 * 109.47648 * 60.00475 * 18 16 14 42 42 H 1.09005 * 109.46881 * 180.02562 * 18 16 14 43 43 H 1.08009 * 120.00132 * 359.97438 * 20 19 16 44 44 H 1.08008 * 119.99758 * 180.02562 * 21 20 19 45 45 H 1.07998 * 119.99840 * 180.02562 * 22 21 20 46 46 H 0.97001 * 120.00346 * 0.02562 * 25 24 23 47 47 H 0.97006 * 120.00187 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.00227 * 0.02562 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4984 0.5627 -5.2497 10 1 2.5631 1.5430 -5.5823 11 1 1.3121 -0.3714 -6.3890 12 1 0.2266 1.2831 -4.9872 13 6 2.0401 -0.7212 1.2492 14 7 3.5067 -0.6508 1.2908 15 6 3.9597 0.7102 1.6075 16 6 4.0537 -1.6233 2.2463 17 1 3.6652 -1.4117 3.2426 18 6 3.6420 -3.0362 1.8279 19 6 5.5572 -1.5222 2.2610 20 6 6.2491 -1.3364 1.0786 21 6 7.6280 -1.2432 1.0920 22 6 8.3154 -1.3353 2.2880 23 6 7.6233 -1.5154 3.4708 24 16 8.4989 -1.6255 4.9959 25 7 8.8563 -3.2236 5.2416 26 8 9.7399 -0.9631 4.7949 27 8 7.5784 -1.2590 6.0144 28 6 6.2444 -1.6147 3.4565 29 1 -0.3633 0.4260 0.9352 30 1 -0.3634 0.5969 -0.8365 31 1 -0.3633 -1.0230 -0.0988 32 1 3.1263 -0.7994 -1.2057 33 1 1.6055 -1.7197 -1.2952 34 1 2.9243 -1.8412 -4.7317 35 1 1.7271 -1.7649 1.2193 36 1 1.6280 -0.2437 2.1381 37 1 5.0457 0.7592 1.5293 38 1 3.5128 1.4144 0.9056 39 1 3.6565 0.9671 2.6225 40 1 2.5546 -3.1097 1.8171 41 1 4.0304 -3.2479 0.8317 42 1 4.0475 -3.7578 2.5372 43 1 5.7121 -1.2640 0.1442 44 1 8.1684 -1.0976 0.1683 45 1 9.3929 -1.2621 2.2986 46 1 8.5805 -3.8880 4.5909 47 1 9.3416 -3.4955 6.0364 48 1 5.7040 -1.7598 4.3803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:01 Heat of formation + Delta-G solvation = -79.525382 kcal Electronic energy + Delta-G solvation = -28001.681675 eV Core-core repulsion = 24182.190713 eV Total energy + Delta-G solvation = -3819.490961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94572 -38.96639 -38.22829 -36.92490 -36.34902 -34.31060 -34.02798 -32.77294 -32.27624 -30.70527 -29.04173 -27.62412 -25.73802 -24.97731 -24.45730 -23.51337 -21.66248 -20.40517 -20.28376 -18.89877 -18.45446 -18.31496 -17.57110 -17.29272 -16.72967 -16.47997 -16.43229 -15.96616 -15.94735 -15.56755 -15.05930 -14.75948 -14.55145 -14.21740 -14.13301 -13.79107 -13.49037 -13.29665 -13.27637 -13.20310 -13.17208 -13.15172 -13.05214 -12.79756 -12.77009 -12.58885 -12.49678 -12.38298 -12.23104 -11.93404 -11.87132 -11.59905 -11.33331 -11.31262 -10.87032 -10.85524 -10.43559 -10.35543 -9.87365 -9.10223 -8.09389 -6.16355 -0.61313 -0.21159 0.23990 1.40448 1.40711 1.50893 2.14958 2.40325 2.45493 2.75881 2.99060 3.23770 3.40259 3.72209 3.87012 4.06295 4.10721 4.19008 4.24380 4.28654 4.35898 4.46195 4.52073 4.58135 4.64178 4.69701 4.79708 4.81295 4.83999 4.91760 4.94314 5.00547 5.05718 5.08525 5.29240 5.31535 5.34870 5.37036 5.44727 5.51311 5.54214 5.69721 5.80878 5.98849 6.07432 6.23520 6.29820 6.35510 6.42544 7.02067 7.50212 9.01580 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.002573 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.196356 B =10877.921671 C =11622.841596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 H 0.049 0.951 4 C 0.052 3.948 5 C -0.527 4.527 6 H 0.052 0.948 7 C 0.002 3.998 8 N -0.930 5.930 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.542 5.542 15 C 0.028 3.972 16 C 0.119 3.881 17 H 0.061 0.939 18 C -0.140 4.140 19 C -0.098 4.098 20 C -0.041 4.041 21 C -0.145 4.145 22 C -0.022 4.022 23 C -0.675 4.675 24 S 2.731 3.269 25 N -1.234 6.234 26 O -0.995 6.995 27 O -0.997 6.997 28 C -0.022 4.022 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.006 0.994 33 H -0.021 1.021 34 H 0.258 0.742 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.147 0.853 45 H 0.159 0.841 46 H 0.429 0.571 47 H 0.430 0.570 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -4.878 18.875 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 H 0.067 0.933 4 C 0.015 3.985 5 C -0.565 4.565 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.059 4.059 14 N -0.267 5.267 15 C -0.120 4.120 16 C 0.011 3.989 17 H 0.079 0.921 18 C -0.197 4.197 19 C -0.100 4.100 20 C -0.060 4.060 21 C -0.164 4.164 22 C -0.042 4.042 23 C -0.763 4.763 24 S 2.821 3.179 25 N -0.914 5.914 26 O -0.984 6.984 27 O -0.986 6.986 28 C -0.041 4.041 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.025 0.975 33 H -0.002 1.002 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.165 0.835 45 H 0.176 0.824 46 H 0.259 0.741 47 H 0.263 0.737 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.259 -4.207 18.835 22.343 hybrid contribution -0.817 0.018 -1.278 1.517 sum 10.442 -4.189 17.557 20.853 Atomic orbital electron populations 1.21620 0.95223 1.00987 1.00641 1.21079 0.95216 0.98487 0.94854 0.93274 1.18796 0.95437 0.93168 0.91088 1.21740 1.33837 1.08264 0.92685 0.92980 1.25801 0.95597 0.96034 1.02079 1.70094 1.40487 1.22737 1.23784 0.85689 0.78824 0.78556 0.79406 1.20252 1.21092 1.19150 1.22189 0.86195 1.01059 0.96497 1.61868 1.09819 1.05344 1.49622 1.22362 1.00811 0.89832 0.99011 1.20602 0.89973 0.93705 0.94578 0.92114 1.21893 1.01807 0.94271 1.01777 1.19927 0.95370 1.01340 0.93321 1.21540 0.94609 0.91157 0.98659 1.21568 0.94092 1.01357 0.99391 1.21184 1.01058 0.91224 0.90699 1.30397 1.05645 1.20831 1.19450 1.00410 0.72578 0.72706 0.72235 1.52654 1.75820 1.26593 1.36367 1.93567 1.44715 1.74113 1.86053 1.93565 1.65527 1.82597 1.56890 1.20910 0.92202 0.92561 0.98453 0.91945 0.93882 0.93820 0.97550 1.00236 0.93278 0.90693 0.94057 0.91820 0.92079 0.94920 0.91815 0.93455 0.90046 0.86043 0.83498 0.82384 0.74072 0.73730 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 8.91 71.98 0.64 -3.89 16 2 C -0.08 -3.04 2.33 -10.79 -0.03 -3.06 16 3 H 0.05 1.98 6.53 -2.39 -0.02 1.97 16 4 C 0.05 2.66 4.39 29.85 0.13 2.79 16 5 C -0.53 -29.48 8.48 25.60 0.22 -29.26 16 6 H 0.05 2.84 7.06 -2.91 -0.02 2.82 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.07 2.16 4.23 86.30 0.37 2.53 16 14 N -0.54 -16.80 3.23 -901.50 -2.91 -19.71 16 15 C 0.03 0.81 8.95 127.69 1.14 1.95 16 16 C 0.12 3.02 2.28 44.17 0.10 3.13 16 17 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16 18 C -0.14 -3.46 8.99 71.98 0.65 -2.81 16 19 C -0.10 -2.37 3.81 -19.87 -0.08 -2.45 16 20 C -0.04 -1.07 8.05 22.27 0.18 -0.90 16 21 C -0.15 -3.14 10.05 22.27 0.22 -2.92 16 22 C -0.02 -0.42 9.52 22.27 0.21 -0.21 16 23 C -0.68 -12.62 5.94 22.27 0.13 -12.49 16 24 S 2.73 46.05 6.28 -56.49 -0.35 45.70 16 25 N -1.23 -9.90 9.55 37.02 0.35 -9.54 16 26 O -1.00 -22.83 17.29 -128.00 -2.21 -25.05 16 27 O -1.00 -23.29 17.29 -128.00 -2.21 -25.50 16 28 C -0.02 -0.44 9.15 22.27 0.20 -0.24 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.66 7.12 -2.39 -0.02 1.65 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.01 0.34 7.56 -2.39 -0.02 0.32 16 33 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.07 2.38 5.64 -2.38 -0.01 2.37 16 36 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 37 H 0.06 1.82 6.16 -2.39 -0.01 1.80 16 38 H 0.06 1.94 6.43 -2.38 -0.02 1.93 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.58 6.10 -2.39 -0.01 1.57 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.12 3.87 7.72 -2.91 -0.02 3.85 16 44 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.16 2.33 7.62 -2.91 -0.02 2.31 16 46 H 0.43 1.62 8.92 -96.74 -0.86 0.76 16 47 H 0.43 1.91 8.96 -96.74 -0.87 1.04 16 48 H 0.15 2.64 7.60 -2.91 -0.02 2.62 16 Total: -1.00 -75.18 393.01 -1.22 -76.40 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -0.75 Total: 14.28 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 4.56 Total: -47.26 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.27 Total: -85.15 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -4.43 Total: -50.55 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 46.05 SS G_CDS: -0.35 Total: 45.70 kcal Total: -75.18 -1.22 -76.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.125 kcal (2) G-P(sol) polarization free energy of solvation -75.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds