Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.53001 * 109.46964 * 120.00309 * 2 1 3 5 5 C 1.50699 * 109.47111 * 294.99344 * 4 2 1 6 6 H 1.07999 * 119.99609 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00131 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99873 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47357 * 89.99659 * 9 7 5 11 11 H 1.48504 * 109.47146 * 209.99777 * 9 7 5 12 12 H 1.48506 * 109.47177 * 329.99521 * 9 7 5 13 13 C 1.52996 * 109.46419 * 240.00047 * 2 1 3 14 14 N 1.46905 * 109.47371 * 65.00329 * 13 2 1 15 15 C 1.46897 * 110.99976 * 66.04316 * 14 13 2 16 16 C 1.46904 * 110.99627 * 189.99784 * 14 13 2 17 17 H 1.08994 * 109.47108 * 299.99610 * 16 14 13 18 18 C 1.52998 * 109.47506 * 60.00057 * 16 14 13 19 19 C 1.50708 * 109.46519 * 179.97438 * 16 14 13 20 20 C 1.38254 * 119.99823 * 320.01862 * 19 16 14 21 21 C 1.38216 * 119.99725 * 179.97438 * 20 19 16 22 22 C 1.38256 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38208 * 119.99920 * 359.73680 * 22 21 20 24 24 S 1.76200 * 120.00281 * 180.27729 * 23 22 21 25 25 N 1.65595 * 107.22213 * 270.23935 * 24 23 22 26 26 O 1.42107 * 106.39717 * 23.78116 * 24 23 22 27 27 O 1.42097 * 106.40128 * 156.69772 * 24 23 22 28 28 C 1.38212 * 119.99857 * 140.00266 * 19 16 14 29 29 H 1.08999 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46770 * 300.00209 * 1 2 3 31 31 H 1.08993 * 109.47319 * 59.99408 * 1 2 3 32 32 H 1.08995 * 109.47150 * 54.99925 * 4 2 1 33 33 H 1.09001 * 109.46642 * 175.00047 * 4 2 1 34 34 H 0.96996 * 120.00027 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47437 * 304.99880 * 13 2 1 36 36 H 1.09005 * 109.47272 * 185.00079 * 13 2 1 37 37 H 1.08999 * 109.46969 * 183.95334 * 15 14 13 38 38 H 1.09000 * 109.46659 * 303.95416 * 15 14 13 39 39 H 1.08997 * 109.47243 * 63.95736 * 15 14 13 40 40 H 1.09007 * 109.46849 * 299.99776 * 18 16 14 41 41 H 1.09005 * 109.47299 * 59.99162 * 18 16 14 42 42 H 1.08987 * 109.47151 * 179.97438 * 18 16 14 43 43 H 1.07997 * 120.00472 * 0.02562 * 20 19 16 44 44 H 1.08001 * 119.99666 * 180.02562 * 21 20 19 45 45 H 1.07999 * 120.00076 * 180.02562 * 22 21 20 46 46 H 0.97003 * 119.99826 * 0.02562 * 25 24 23 47 47 H 0.96997 * 120.00242 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99812 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0802 0.9741 2.3757 7 6 1.9933 -0.4018 3.7282 8 7 2.6764 -1.5189 3.8510 9 14 1.4987 0.5626 5.2496 10 1 0.1718 0.0936 5.7233 11 1 2.5083 0.3531 6.3184 12 1 1.4229 2.0079 4.9167 13 6 2.0399 -0.7213 -1.2493 14 7 1.6512 0.0375 -2.4457 15 6 2.3340 1.3374 -2.4895 16 6 1.9122 -0.7358 -3.6672 17 1 2.9754 -0.9674 -3.7303 18 6 1.1082 -2.0369 -3.6288 19 6 1.5014 0.0727 -4.8708 20 6 0.3446 0.8290 -4.8334 21 6 -0.0319 1.5709 -5.9371 22 6 0.7479 1.5564 -7.0787 23 6 1.9069 0.8042 -7.1143 24 16 2.9047 0.7914 -8.5665 25 7 2.3592 -0.4437 -9.5252 26 8 2.6164 1.9966 -9.2619 27 8 4.2139 0.4282 -8.1505 28 6 2.2812 0.0584 -6.0118 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2055 34 1 2.9237 -1.8419 4.7316 35 1 1.6052 -1.7198 -1.2952 36 1 3.1262 -0.7996 -1.2057 37 1 1.9759 1.9071 -3.3470 38 1 2.1239 1.8891 -1.5732 39 1 3.4088 1.1804 -2.5808 40 1 1.4050 -2.6218 -2.7581 41 1 0.0449 -1.8053 -3.5655 42 1 1.3015 -2.6103 -4.5352 43 1 -0.2644 0.8407 -3.9416 44 1 -0.9353 2.1620 -5.9078 45 1 0.4539 2.1364 -7.9409 46 1 1.6154 -0.9930 -9.2320 47 1 2.7829 -0.6175 -10.3802 48 1 3.1851 -0.5319 -6.0407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -56.915493 kcal Electronic energy + Delta-G solvation = -27594.057796 eV Core-core repulsion = 23775.547273 eV Total energy + Delta-G solvation = -3818.510523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.14383 -37.89866 -37.44503 -36.13556 -34.89649 -33.58882 -32.62105 -31.62837 -31.37579 -29.87615 -27.10195 -26.32727 -24.71524 -23.92648 -23.45281 -22.20708 -20.67348 -19.63465 -18.90989 -18.22208 -17.69716 -16.97160 -16.58735 -16.24039 -15.84458 -15.63269 -15.12283 -14.85778 -14.70895 -14.38114 -14.16547 -13.77128 -13.44936 -13.04561 -12.69320 -12.56862 -12.52420 -12.44086 -12.39669 -12.31794 -12.24140 -12.10578 -11.69721 -11.44459 -11.43181 -11.35924 -11.05220 -10.89978 -10.86078 -10.81556 -10.68609 -10.30040 -10.28814 -9.64222 -9.59968 -9.19871 -9.11925 -8.96208 -8.34071 -8.13508 -5.99004 -4.00079 0.04075 0.50226 0.94898 2.74927 3.09961 3.31766 3.38288 3.40973 3.41559 3.94727 4.18054 4.44994 4.47456 4.56884 4.73046 4.97835 5.06684 5.13284 5.16247 5.33604 5.37254 5.42366 5.53218 5.56489 5.59855 5.65690 5.72013 5.77518 5.81131 5.91473 6.01680 6.06493 6.11348 6.17796 6.24276 6.39360 6.49144 6.52796 6.58606 6.65786 6.97706 7.07602 7.17595 7.29929 7.36666 7.67854 7.83446 8.01105 8.45051 9.06258 9.63387 11.12504 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.002068 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.248467 B =13533.199001 C =13710.570643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.056 3.944 14 N -0.531 5.531 15 C 0.018 3.982 16 C 0.115 3.885 17 H 0.050 0.950 18 C -0.143 4.143 19 C -0.090 4.090 20 C -0.029 4.029 21 C -0.144 4.144 22 C -0.024 4.024 23 C -0.677 4.677 24 S 2.702 3.298 25 N -1.251 6.251 26 O -0.966 6.966 27 O -0.964 6.964 28 C -0.019 4.019 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.417 0.583 47 H 0.419 0.581 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 1.017 -27.440 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.071 4.071 14 N -0.255 5.255 15 C -0.130 4.130 16 C 0.006 3.994 17 H 0.068 0.932 18 C -0.201 4.201 19 C -0.091 4.091 20 C -0.048 4.048 21 C -0.163 4.163 22 C -0.043 4.043 23 C -0.765 4.765 24 S 2.791 3.209 25 N -0.926 5.926 26 O -0.956 6.956 27 O -0.953 6.953 28 C -0.039 4.039 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.244 0.756 47 H 0.249 0.751 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.380 1.721 -27.359 27.761 hybrid contribution 0.010 -0.214 1.187 1.206 sum -4.369 1.507 -26.172 26.577 Atomic orbital electron populations 1.21572 0.95792 1.00439 1.00060 1.21226 0.95898 0.99128 0.93661 0.92537 1.19121 0.95900 0.95539 0.90465 1.21215 1.34534 1.08277 0.90959 0.92619 1.25021 0.95338 0.95119 0.99107 1.69963 1.39067 1.21254 1.23369 0.86634 0.78214 0.80419 0.82965 1.20727 1.21329 1.19940 1.22435 0.97786 0.97642 0.89202 1.62131 1.58186 1.03906 1.01303 1.22477 0.96049 0.91697 1.02786 1.20589 0.98121 0.92881 0.87812 0.93174 1.21905 1.00939 0.95224 1.02002 1.20014 0.95482 0.98590 0.95055 1.21563 0.94451 0.90890 0.97882 1.21373 1.00756 1.00795 0.93392 1.20938 0.91091 0.93497 0.98803 1.30356 1.14007 1.12843 1.19342 1.01486 0.73300 0.72940 0.73143 1.53070 1.50237 1.53766 1.35478 1.93601 1.84793 1.44707 1.72452 1.93612 1.36291 1.83161 1.82259 1.20831 0.97697 0.94087 0.91240 0.94232 0.92825 0.94070 0.96626 0.96984 0.93103 0.90652 0.95207 0.92058 0.90311 0.95843 0.91264 0.91514 0.92437 0.83799 0.84878 0.84293 0.75624 0.75064 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.89 37.16 0.33 -1.90 16 2 C -0.08 -1.57 2.26 -90.62 -0.20 -1.78 16 3 H 0.06 1.14 6.26 -51.93 -0.33 0.81 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.11 8.41 -34.44 -0.29 -14.40 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 0.91 4.16 -3.82 -0.02 0.90 16 14 N -0.53 -7.14 3.42 -236.28 -0.81 -7.95 16 15 C 0.02 0.24 8.94 60.06 0.54 0.78 16 16 C 0.11 1.31 2.28 -68.86 -0.16 1.15 16 17 H 0.05 0.59 8.00 -51.93 -0.42 0.18 16 18 C -0.14 -1.48 8.96 37.16 0.33 -1.15 16 19 C -0.09 -0.93 3.78 -104.62 -0.40 -1.32 16 20 C -0.03 -0.28 8.07 -39.58 -0.32 -0.60 16 21 C -0.14 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.02 -0.20 9.52 -39.59 -0.38 -0.57 16 23 C -0.68 -5.94 5.94 -39.58 -0.24 -6.17 16 24 S 2.70 22.73 6.28 -107.50 -0.68 22.06 16 25 N -1.25 -5.36 9.55 60.35 0.58 -4.78 16 26 O -0.97 -10.95 17.29 -57.17 -0.99 -11.93 16 27 O -0.96 -11.49 17.28 -57.17 -0.99 -12.48 16 28 C -0.02 -0.18 9.15 -39.58 -0.36 -0.54 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 31 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 1.20 5.83 -51.93 -0.30 0.90 16 36 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.06 0.75 6.11 -51.93 -0.32 0.43 16 38 H 0.08 1.13 6.21 -51.93 -0.32 0.81 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.49 8.14 -51.94 -0.42 0.07 16 43 H 0.14 1.42 7.72 -52.49 -0.41 1.01 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.14 0.92 7.62 -52.49 -0.40 0.52 16 46 H 0.42 0.88 8.92 -34.47 -0.31 0.57 16 47 H 0.42 1.13 8.96 -34.47 -0.31 0.82 16 48 H 0.14 1.25 7.60 -52.49 -0.40 0.85 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -34.98 392.80 -10.50 -45.48 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.47 Total: -1.65 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -1.77 Total: -25.18 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.50 Total: -38.76 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.98 Total: -24.41 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 22.73 SS G_CDS: -0.68 Total: 22.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.98 -10.50 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.438 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds