Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.53001 * 109.46964 * 120.00309 * 2 1 3 5 5 C 1.50699 * 109.47111 * 294.99344 * 4 2 1 6 6 H 1.07999 * 119.99609 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00131 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99873 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47357 * 89.99659 * 9 7 5 11 11 H 1.48504 * 109.47146 * 209.99777 * 9 7 5 12 12 H 1.48506 * 109.47177 * 329.99521 * 9 7 5 13 13 C 1.52996 * 109.46419 * 240.00047 * 2 1 3 14 14 N 1.46905 * 109.47371 * 65.00329 * 13 2 1 15 15 C 1.46897 * 110.99976 * 66.04316 * 14 13 2 16 16 C 1.46904 * 110.99627 * 189.99784 * 14 13 2 17 17 H 1.08994 * 109.47108 * 299.99610 * 16 14 13 18 18 C 1.52998 * 109.47506 * 60.00057 * 16 14 13 19 19 C 1.50708 * 109.46519 * 179.97438 * 16 14 13 20 20 C 1.38254 * 119.99823 * 320.01862 * 19 16 14 21 21 C 1.38216 * 119.99725 * 179.97438 * 20 19 16 22 22 C 1.38256 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38208 * 119.99920 * 359.73680 * 22 21 20 24 24 S 1.76200 * 120.00281 * 180.27729 * 23 22 21 25 25 N 1.65595 * 107.22213 * 270.23935 * 24 23 22 26 26 O 1.42107 * 106.39717 * 23.78116 * 24 23 22 27 27 O 1.42097 * 106.40128 * 156.69772 * 24 23 22 28 28 C 1.38212 * 119.99857 * 140.00266 * 19 16 14 29 29 H 1.08999 * 109.47411 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46770 * 300.00209 * 1 2 3 31 31 H 1.08993 * 109.47319 * 59.99408 * 1 2 3 32 32 H 1.08995 * 109.47150 * 54.99925 * 4 2 1 33 33 H 1.09001 * 109.46642 * 175.00047 * 4 2 1 34 34 H 0.96996 * 120.00027 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47437 * 304.99880 * 13 2 1 36 36 H 1.09005 * 109.47272 * 185.00079 * 13 2 1 37 37 H 1.08999 * 109.46969 * 183.95334 * 15 14 13 38 38 H 1.09000 * 109.46659 * 303.95416 * 15 14 13 39 39 H 1.08997 * 109.47243 * 63.95736 * 15 14 13 40 40 H 1.09007 * 109.46849 * 299.99776 * 18 16 14 41 41 H 1.09005 * 109.47299 * 59.99162 * 18 16 14 42 42 H 1.08987 * 109.47151 * 179.97438 * 18 16 14 43 43 H 1.07997 * 120.00472 * 0.02562 * 20 19 16 44 44 H 1.08001 * 119.99666 * 180.02562 * 21 20 19 45 45 H 1.07999 * 120.00076 * 180.02562 * 22 21 20 46 46 H 0.97003 * 119.99826 * 0.02562 * 25 24 23 47 47 H 0.96997 * 120.00242 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99812 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0802 0.9741 2.3757 7 6 1.9933 -0.4018 3.7282 8 7 2.6764 -1.5189 3.8510 9 14 1.4987 0.5626 5.2496 10 1 0.1718 0.0936 5.7233 11 1 2.5083 0.3531 6.3184 12 1 1.4229 2.0079 4.9167 13 6 2.0399 -0.7213 -1.2493 14 7 1.6512 0.0375 -2.4457 15 6 2.3340 1.3374 -2.4895 16 6 1.9122 -0.7358 -3.6672 17 1 2.9754 -0.9674 -3.7303 18 6 1.1082 -2.0369 -3.6288 19 6 1.5014 0.0727 -4.8708 20 6 0.3446 0.8290 -4.8334 21 6 -0.0319 1.5709 -5.9371 22 6 0.7479 1.5564 -7.0787 23 6 1.9069 0.8042 -7.1143 24 16 2.9047 0.7914 -8.5665 25 7 2.3592 -0.4437 -9.5252 26 8 2.6164 1.9966 -9.2619 27 8 4.2139 0.4282 -8.1505 28 6 2.2812 0.0584 -6.0118 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2055 34 1 2.9237 -1.8419 4.7316 35 1 1.6052 -1.7198 -1.2952 36 1 3.1262 -0.7996 -1.2057 37 1 1.9759 1.9071 -3.3470 38 1 2.1239 1.8891 -1.5732 39 1 3.4088 1.1804 -2.5808 40 1 1.4050 -2.6218 -2.7581 41 1 0.0449 -1.8053 -3.5655 42 1 1.3015 -2.6103 -4.5352 43 1 -0.2644 0.8407 -3.9416 44 1 -0.9353 2.1620 -5.9078 45 1 0.4539 2.1364 -7.9409 46 1 1.6154 -0.9930 -9.2320 47 1 2.7829 -0.6175 -10.3802 48 1 3.1851 -0.5319 -6.0407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -81.832349 kcal Electronic energy + Delta-G solvation = -27595.138272 eV Core-core repulsion = 23775.547273 eV Total energy + Delta-G solvation = -3819.590999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95755 -39.00656 -38.24171 -36.93603 -36.43702 -34.36967 -34.04152 -32.73328 -32.26627 -30.70563 -28.98047 -27.69157 -25.89321 -25.14637 -24.40685 -23.41041 -21.63386 -20.46498 -20.30416 -18.90663 -18.50439 -18.32490 -17.57198 -17.30111 -16.75786 -16.46883 -16.42752 -15.96633 -15.86604 -15.79243 -15.11610 -14.76298 -14.57484 -14.35069 -14.10310 -13.86779 -13.46097 -13.30198 -13.27134 -13.22504 -13.18906 -13.17761 -13.07680 -12.76034 -12.73177 -12.56621 -12.47716 -12.39424 -12.18720 -12.00225 -11.85532 -11.65278 -11.34475 -11.29234 -11.01438 -10.89194 -10.52283 -10.33577 -9.86771 -9.29461 -8.17031 -6.25682 -0.62003 -0.20322 0.25124 1.40121 1.40831 1.51611 2.14885 2.40812 2.42434 2.74888 2.92653 3.16543 3.39546 3.71095 3.87912 4.05813 4.08509 4.19288 4.24128 4.28932 4.33151 4.47666 4.52300 4.55671 4.63147 4.70779 4.83193 4.83722 4.90734 4.93717 4.96907 5.03310 5.05986 5.10966 5.28080 5.28110 5.32992 5.35616 5.46982 5.49966 5.54297 5.58163 5.82468 5.83097 5.90771 6.07593 6.17299 6.32650 6.34630 6.90522 7.42466 8.94953 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027655 B = 0.002068 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.248467 B =13533.199001 C =13710.570643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.525 4.525 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.068 3.932 14 N -0.524 5.524 15 C 0.020 3.980 16 C 0.114 3.886 17 H 0.045 0.955 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.036 4.036 21 C -0.140 4.140 22 C -0.025 4.025 23 C -0.674 4.674 24 S 2.725 3.275 25 N -1.234 6.234 26 O -0.995 6.995 27 O -1.002 7.002 28 C -0.028 4.028 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.068 0.932 32 H -0.008 1.008 33 H -0.018 1.018 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.015 0.985 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.143 0.857 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.430 0.570 47 H 0.429 0.571 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 1.940 -28.932 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.059 4.059 14 N -0.248 5.248 15 C -0.128 4.128 16 C 0.006 3.994 17 H 0.062 0.938 18 C -0.197 4.197 19 C -0.100 4.100 20 C -0.055 4.055 21 C -0.159 4.159 22 C -0.044 4.044 23 C -0.763 4.763 24 S 2.815 3.185 25 N -0.914 5.914 26 O -0.984 6.984 27 O -0.991 6.991 28 C -0.048 4.048 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.010 0.990 33 H 0.000 1.000 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.161 0.839 44 H 0.176 0.824 45 H 0.175 0.825 46 H 0.260 0.740 47 H 0.262 0.738 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.111 2.643 -28.880 29.637 hybrid contribution 0.539 -0.527 1.563 1.736 sum -5.571 2.116 -27.316 27.959 Atomic orbital electron populations 1.21458 0.94386 1.00473 1.00456 1.21018 0.96894 0.98336 0.92730 0.92973 1.19012 0.93880 0.94785 0.92812 1.21619 1.34188 1.08506 0.92037 0.92175 1.25943 0.95341 0.96133 1.02634 1.70100 1.40352 1.22971 1.24204 0.85529 0.78011 0.79275 0.78735 1.19806 1.21082 1.18861 1.22143 0.96722 0.97766 0.89286 1.62078 1.57829 1.03818 1.01092 1.22463 0.95775 0.91665 1.02890 1.20630 0.98130 0.93398 0.87260 0.93750 1.21887 1.00773 0.94651 1.02431 1.19877 0.96238 0.99282 0.94625 1.21617 0.94196 0.91196 0.98458 1.21640 1.01388 1.00219 0.92603 1.21239 0.90636 0.93046 0.99510 1.30294 1.14184 1.12870 1.18967 1.00527 0.72409 0.72752 0.72789 1.52648 1.50568 1.52838 1.35338 1.93568 1.85076 1.46739 1.73064 1.93572 1.38850 1.83736 1.82939 1.20885 0.97847 0.94592 0.91435 0.94361 0.94639 0.91287 0.99006 0.99983 0.93006 0.90223 0.96663 0.90421 0.91412 0.96461 0.92483 0.91281 0.90506 0.83938 0.82425 0.82536 0.74021 0.73801 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.98 8.89 71.98 0.64 -3.34 16 2 C -0.07 -2.81 2.26 -10.79 -0.02 -2.84 16 3 H 0.05 2.11 6.26 -2.39 -0.01 2.10 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.48 8.41 25.60 0.22 -29.27 16 6 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.07 2.25 4.16 86.30 0.36 2.61 16 14 N -0.52 -13.69 3.42 -901.46 -3.09 -16.78 16 15 C 0.02 0.53 8.94 127.69 1.14 1.67 16 16 C 0.11 2.50 2.28 44.17 0.10 2.60 16 17 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 18 C -0.14 -2.72 8.96 71.98 0.65 -2.07 16 19 C -0.10 -1.88 3.78 -19.86 -0.08 -1.95 16 20 C -0.04 -0.61 8.07 22.27 0.18 -0.43 16 21 C -0.14 -1.88 10.05 22.27 0.22 -1.66 16 22 C -0.03 -0.35 9.52 22.27 0.21 -0.13 16 23 C -0.67 -10.58 5.94 22.27 0.13 -10.44 16 24 S 2.73 42.31 6.28 -56.49 -0.35 41.96 16 25 N -1.23 -8.09 9.55 37.02 0.35 -7.74 16 26 O -1.00 -21.22 17.29 -128.00 -2.21 -23.43 16 27 O -1.00 -23.33 17.28 -128.00 -2.21 -25.54 16 28 C -0.03 -0.50 9.15 22.27 0.20 -0.30 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.03 1.38 6.95 -2.38 -0.02 1.37 16 31 H 0.07 2.09 7.75 -2.39 -0.02 2.07 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.08 2.56 5.83 -2.39 -0.01 2.55 16 36 H 0.02 0.54 8.12 -2.38 -0.02 0.52 16 37 H 0.08 1.77 6.11 -2.39 -0.01 1.76 16 38 H 0.07 1.91 6.21 -2.39 -0.01 1.90 16 39 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 1.24 6.20 -2.38 -0.01 1.23 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.14 2.45 7.72 -2.91 -0.02 2.43 16 44 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 45 H 0.16 1.60 7.62 -2.91 -0.02 1.58 16 46 H 0.43 0.74 8.92 -96.75 -0.86 -0.12 16 47 H 0.43 1.46 8.96 -96.75 -0.87 0.59 16 48 H 0.14 2.42 7.60 -2.91 -0.02 2.40 16 Total: -1.00 -75.88 392.80 -1.41 -77.29 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -0.75 Total: 8.07 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 4.55 Total: -43.47 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.45 Total: -81.34 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -4.43 Total: -48.97 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 42.31 SS G_CDS: -0.35 Total: 41.96 kcal Total: -75.88 -1.41 -77.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.541 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds