Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46913 * 2 1 4 4 C 1.52993 * 109.47614 * 120.00519 * 2 1 3 5 5 C 1.50704 * 109.47032 * 295.00207 * 4 2 1 6 6 H 1.07997 * 119.99821 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99948 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99724 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47301 * 89.99962 * 9 7 5 11 11 H 1.48505 * 109.47291 * 209.99932 * 9 7 5 12 12 H 1.48499 * 109.47337 * 329.99848 * 9 7 5 13 13 C 1.53008 * 109.46834 * 240.00289 * 2 1 3 14 14 N 1.46902 * 109.46714 * 64.05719 * 13 2 1 15 15 C 1.46906 * 110.99648 * 185.12380 * 14 13 2 16 16 C 1.50695 * 109.47001 * 185.32200 * 15 14 13 17 17 C 1.38262 * 120.00467 * 260.38239 * 16 15 14 18 18 C 1.38207 * 120.00265 * 179.97438 * 17 16 15 19 19 C 1.38255 * 120.00021 * 359.78985 * 18 17 16 20 20 C 1.38217 * 119.99764 * 0.48639 * 19 18 17 21 21 C 1.38216 * 119.99943 * 80.40541 * 16 15 14 22 22 S 1.76197 * 120.00043 * 359.97342 * 21 16 15 23 23 O 1.42099 * 106.40426 * 278.83846 * 22 21 16 24 24 O 1.42108 * 106.39780 * 51.75732 * 22 21 16 25 25 N 1.65598 * 107.22100 * 165.29290 * 22 21 16 26 26 C 1.46497 * 119.99647 * 95.18754 * 25 22 21 27 27 C 1.46499 * 120.00190 * 275.19585 * 25 22 21 28 28 H 1.08997 * 109.47050 * 59.99610 * 1 2 3 29 29 H 1.08997 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46476 * 299.99543 * 1 2 3 31 31 H 1.09005 * 109.47433 * 54.99706 * 4 2 1 32 32 H 1.08994 * 109.47453 * 174.99513 * 4 2 1 33 33 H 0.96996 * 120.00089 * 180.02562 * 8 7 5 34 34 H 1.08991 * 109.47014 * 304.06028 * 13 2 1 35 35 H 1.08998 * 109.47097 * 184.05023 * 13 2 1 36 36 H 1.00897 * 111.00154 * 61.17685 * 14 13 2 37 37 H 1.09006 * 109.46653 * 65.32868 * 15 14 13 38 38 H 1.08995 * 109.47548 * 305.32716 * 15 14 13 39 39 H 1.07999 * 119.99451 * 359.97438 * 17 16 15 40 40 H 1.08006 * 119.99711 * 180.02562 * 18 17 16 41 41 H 1.08000 * 119.99809 * 180.25513 * 19 18 17 42 42 H 1.08000 * 119.99616 * 179.76738 * 20 19 18 43 43 H 1.08998 * 109.46802 * 94.74805 * 26 25 22 44 44 H 1.09000 * 109.47148 * 214.74410 * 26 25 22 45 45 H 1.09001 * 109.47507 * 334.74735 * 26 25 22 46 46 H 1.09001 * 109.47669 * 89.99388 * 27 25 22 47 47 H 1.09001 * 109.47162 * 209.99989 * 27 25 22 48 48 H 1.09001 * 109.46868 * 329.99452 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9935 -0.4020 3.7282 8 7 2.6767 -1.5190 3.8510 9 14 1.4999 0.5630 5.2495 10 1 0.1729 0.0948 5.7238 11 1 2.5096 0.3532 6.3181 12 1 1.4249 2.0082 4.9164 13 6 2.0400 -0.7212 -1.2494 14 7 1.6319 0.0257 -2.4467 15 6 1.9988 -0.6999 -3.6702 16 6 1.6843 0.1520 -4.8728 17 6 0.5247 -0.0692 -5.5926 18 6 0.2360 0.7125 -6.6952 19 6 1.1047 1.7185 -7.0760 20 6 2.2667 1.9358 -6.3598 21 6 2.5553 1.1542 -5.2566 22 16 4.0330 1.4362 -4.3394 23 8 3.6624 2.2169 -3.2114 24 8 4.6857 0.1783 -4.2335 25 7 5.0123 2.3941 -5.2698 26 6 5.0078 3.8470 -5.0822 27 6 5.8830 1.7887 -6.2806 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6055 -1.7199 1.2950 32 1 3.1264 -0.7996 1.2054 33 1 2.9240 -1.8419 4.7315 34 1 1.6184 -1.7256 -1.2865 35 1 3.1275 -0.7845 -1.2139 36 1 2.0259 0.9545 -2.4453 37 1 1.4320 -1.6294 -3.7252 38 1 3.0651 -0.9250 -3.6532 39 1 -0.1555 -0.8528 -5.2931 40 1 -0.6700 0.5399 -7.2572 41 1 0.8770 2.3319 -7.9352 42 1 2.9471 2.7192 -6.6595 43 1 5.8115 4.1279 -4.4016 44 1 5.1579 4.3380 -6.0438 45 1 4.0509 4.1562 -4.6618 46 1 5.3498 1.7263 -7.2292 47 1 6.7758 2.4014 -6.4051 48 1 6.1712 0.7877 -5.9593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -48.775549 kcal Electronic energy + Delta-G solvation = -28275.497118 eV Core-core repulsion = 24457.339570 eV Total energy + Delta-G solvation = -3818.157549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.75331 -37.44388 -37.01650 -36.55179 -35.98528 -34.25043 -32.27291 -31.58220 -30.82935 -28.52346 -26.94342 -26.13546 -25.06882 -24.25239 -23.50584 -22.20787 -21.69111 -19.34709 -19.01044 -18.18526 -17.56724 -16.46892 -16.36533 -16.11525 -15.77157 -15.34890 -15.05200 -14.83796 -14.62058 -14.42601 -14.17274 -13.94359 -13.51700 -13.27901 -13.04139 -12.93488 -12.80419 -12.66523 -12.53980 -12.38395 -12.10484 -12.06063 -11.86471 -11.83069 -11.43415 -11.35342 -11.23223 -10.86691 -10.73604 -10.66030 -10.18443 -10.14810 -9.66774 -9.56500 -9.55613 -9.27602 -8.98211 -8.84563 -8.22896 -8.09228 -5.87772 -3.88134 0.08804 0.53182 0.97712 2.51795 3.18286 3.40205 3.40879 3.45839 3.50313 4.17609 4.26453 4.33530 4.43166 4.55712 4.58474 4.71832 4.91125 4.92762 4.96156 4.98761 5.15401 5.22183 5.36773 5.37715 5.40758 5.47880 5.48087 5.55595 5.73123 5.73615 5.83476 5.97948 6.02147 6.06439 6.14721 6.29262 6.49139 6.53253 6.65864 6.82343 7.08614 7.28932 7.29225 7.40591 7.64900 7.81822 7.98079 8.13333 8.57976 9.18135 9.74428 11.23956 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.002901 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.760840 B = 9648.221539 C =10644.839903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.687 5.687 15 C 0.038 3.962 16 C 0.029 3.971 17 C -0.116 4.116 18 C -0.068 4.068 19 C -0.142 4.142 20 C -0.034 4.034 21 C -0.670 4.670 22 S 2.684 3.316 23 O -0.940 6.940 24 O -0.948 6.948 25 N -1.007 6.007 26 C 0.086 3.914 27 C 0.080 3.920 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.346 0.654 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 8.278 -29.618 30.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 H 0.076 0.924 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.068 4.068 14 N -0.321 5.321 15 C -0.091 4.091 16 C 0.027 3.973 17 C -0.136 4.136 18 C -0.086 4.086 19 C -0.161 4.161 20 C -0.053 4.053 21 C -0.757 4.757 22 S 2.774 3.226 23 O -0.929 6.929 24 O -0.938 6.938 25 N -0.847 5.847 26 C -0.060 4.060 27 C -0.065 4.065 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.166 0.834 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.831 7.626 -28.658 29.712 hybrid contribution 0.186 0.678 0.147 0.719 sum 2.017 8.305 -28.511 29.764 Atomic orbital electron populations 1.21584 0.95720 1.00450 1.00181 1.21213 0.96036 0.99335 0.93682 0.92410 1.19133 0.96064 0.95532 0.90356 1.21258 1.34339 1.08236 0.90956 0.92504 1.25022 0.95413 0.95149 0.99055 1.69971 1.39240 1.21340 1.23245 0.86624 0.78113 0.80496 0.82948 1.20794 1.21381 1.19893 1.22249 0.97589 0.97807 0.89134 1.60720 1.64632 1.06297 1.00474 1.21722 1.02062 0.97603 0.87697 1.19483 0.92348 0.91468 0.93963 1.21236 0.96402 1.00599 0.95336 1.21469 0.98393 0.93478 0.95230 1.21223 0.94970 0.99073 1.00790 1.20760 0.96697 0.95810 0.92071 1.30775 1.23265 1.07955 1.13675 1.02506 0.73353 0.73338 0.73450 1.93647 1.83294 1.70223 1.45750 1.93584 1.73811 1.41208 1.85217 1.57257 1.55529 1.17465 1.54459 1.21634 1.03708 0.78108 1.02501 1.21673 0.94508 0.99829 0.90478 0.93927 0.94201 0.92737 0.96496 0.96770 0.93186 0.91086 0.95198 0.83402 0.88374 0.91081 0.84583 0.85113 0.85210 0.85104 0.91686 0.90796 0.90085 0.92527 0.90129 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.88 37.16 0.33 -2.24 16 2 C -0.08 -1.91 2.53 -90.62 -0.23 -2.14 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -15.00 8.41 -34.44 -0.29 -15.29 16 6 H 0.06 1.63 7.06 -52.49 -0.37 1.26 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.96 13.29 55.43 0.74 -27.22 16 9 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.06 1.20 5.07 -3.82 -0.02 1.18 16 14 N -0.69 -12.12 5.91 -115.05 -0.68 -12.80 16 15 C 0.04 0.57 5.22 -4.97 -0.03 0.54 16 16 C 0.03 0.38 5.34 -104.62 -0.56 -0.17 16 17 C -0.12 -1.24 9.67 -39.58 -0.38 -1.63 16 18 C -0.07 -0.57 10.05 -39.59 -0.40 -0.97 16 19 C -0.14 -1.13 10.05 -39.58 -0.40 -1.53 16 20 C -0.03 -0.31 9.56 -39.58 -0.38 -0.69 16 21 C -0.67 -8.07 5.78 -39.58 -0.23 -8.30 16 22 S 2.68 35.38 4.56 -107.50 -0.49 34.89 16 23 O -0.94 -15.22 14.86 -57.17 -0.85 -16.07 16 24 O -0.95 -14.77 14.36 -57.17 -0.82 -15.59 16 25 N -1.01 -8.91 2.62 -129.21 -0.34 -9.24 16 26 C 0.09 0.57 10.14 59.85 0.61 1.18 16 27 C 0.08 0.51 10.70 59.85 0.64 1.15 16 28 H 0.04 0.81 7.72 -51.93 -0.40 0.41 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.20 6.95 -51.92 -0.36 0.84 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.35 6.36 6.23 -39.29 -0.24 6.11 16 37 H 0.10 1.29 8.01 -51.93 -0.42 0.87 16 38 H 0.07 1.13 5.43 -51.93 -0.28 0.85 16 39 H 0.14 1.24 8.04 -52.49 -0.42 0.82 16 40 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.81 7.12 -52.49 -0.37 0.43 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.27 8.11 -51.93 -0.42 -0.16 16 45 H 0.08 0.57 7.47 -51.93 -0.39 0.18 16 46 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 48 H 0.08 0.64 7.07 -51.93 -0.37 0.27 16 LS Contribution 394.59 15.07 5.95 5.95 Total: -1.00 -36.37 394.59 -10.90 -47.27 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.83 Total: 2.12 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -1.55 Total: -26.79 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.28 Total: -49.27 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.67 Total: -31.66 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 35.38 SS G_CDS: -0.49 Total: 34.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.37 -10.90 -47.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.507 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds