Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46913 * 2 1 4 4 C 1.52993 * 109.47614 * 120.00519 * 2 1 3 5 5 C 1.50704 * 109.47032 * 295.00207 * 4 2 1 6 6 H 1.07997 * 119.99821 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99948 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99724 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47301 * 89.99962 * 9 7 5 11 11 H 1.48505 * 109.47291 * 209.99932 * 9 7 5 12 12 H 1.48499 * 109.47337 * 329.99848 * 9 7 5 13 13 C 1.53008 * 109.46834 * 240.00289 * 2 1 3 14 14 N 1.46902 * 109.46714 * 64.05719 * 13 2 1 15 15 C 1.46906 * 110.99648 * 185.12380 * 14 13 2 16 16 C 1.50695 * 109.47001 * 185.32200 * 15 14 13 17 17 C 1.38262 * 120.00467 * 260.38239 * 16 15 14 18 18 C 1.38207 * 120.00265 * 179.97438 * 17 16 15 19 19 C 1.38255 * 120.00021 * 359.78985 * 18 17 16 20 20 C 1.38217 * 119.99764 * 0.48639 * 19 18 17 21 21 C 1.38216 * 119.99943 * 80.40541 * 16 15 14 22 22 S 1.76197 * 120.00043 * 359.97342 * 21 16 15 23 23 O 1.42099 * 106.40426 * 278.83846 * 22 21 16 24 24 O 1.42108 * 106.39780 * 51.75732 * 22 21 16 25 25 N 1.65598 * 107.22100 * 165.29290 * 22 21 16 26 26 C 1.46497 * 119.99647 * 95.18754 * 25 22 21 27 27 C 1.46499 * 120.00190 * 275.19585 * 25 22 21 28 28 H 1.08997 * 109.47050 * 59.99610 * 1 2 3 29 29 H 1.08997 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46476 * 299.99543 * 1 2 3 31 31 H 1.09005 * 109.47433 * 54.99706 * 4 2 1 32 32 H 1.08994 * 109.47453 * 174.99513 * 4 2 1 33 33 H 0.96996 * 120.00089 * 180.02562 * 8 7 5 34 34 H 1.08991 * 109.47014 * 304.06028 * 13 2 1 35 35 H 1.08998 * 109.47097 * 184.05023 * 13 2 1 36 36 H 1.00897 * 111.00154 * 61.17685 * 14 13 2 37 37 H 1.09006 * 109.46653 * 65.32868 * 15 14 13 38 38 H 1.08995 * 109.47548 * 305.32716 * 15 14 13 39 39 H 1.07999 * 119.99451 * 359.97438 * 17 16 15 40 40 H 1.08006 * 119.99711 * 180.02562 * 18 17 16 41 41 H 1.08000 * 119.99809 * 180.25513 * 19 18 17 42 42 H 1.08000 * 119.99616 * 179.76738 * 20 19 18 43 43 H 1.08998 * 109.46802 * 94.74805 * 26 25 22 44 44 H 1.09000 * 109.47148 * 214.74410 * 26 25 22 45 45 H 1.09001 * 109.47507 * 334.74735 * 26 25 22 46 46 H 1.09001 * 109.47669 * 89.99388 * 27 25 22 47 47 H 1.09001 * 109.47162 * 209.99989 * 27 25 22 48 48 H 1.09001 * 109.46868 * 329.99452 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9935 -0.4020 3.7282 8 7 2.6767 -1.5190 3.8510 9 14 1.4999 0.5630 5.2495 10 1 0.1729 0.0948 5.7238 11 1 2.5096 0.3532 6.3181 12 1 1.4249 2.0082 4.9164 13 6 2.0400 -0.7212 -1.2494 14 7 1.6319 0.0257 -2.4467 15 6 1.9988 -0.6999 -3.6702 16 6 1.6843 0.1520 -4.8728 17 6 0.5247 -0.0692 -5.5926 18 6 0.2360 0.7125 -6.6952 19 6 1.1047 1.7185 -7.0760 20 6 2.2667 1.9358 -6.3598 21 6 2.5553 1.1542 -5.2566 22 16 4.0330 1.4362 -4.3394 23 8 3.6624 2.2169 -3.2114 24 8 4.6857 0.1783 -4.2335 25 7 5.0123 2.3941 -5.2698 26 6 5.0078 3.8470 -5.0822 27 6 5.8830 1.7887 -6.2806 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.6055 -1.7199 1.2950 32 1 3.1264 -0.7996 1.2054 33 1 2.9240 -1.8419 4.7315 34 1 1.6184 -1.7256 -1.2865 35 1 3.1275 -0.7845 -1.2139 36 1 2.0259 0.9545 -2.4453 37 1 1.4320 -1.6294 -3.7252 38 1 3.0651 -0.9250 -3.6532 39 1 -0.1555 -0.8528 -5.2931 40 1 -0.6700 0.5399 -7.2572 41 1 0.8770 2.3319 -7.9352 42 1 2.9471 2.7192 -6.6595 43 1 5.8115 4.1279 -4.4016 44 1 5.1579 4.3380 -6.0438 45 1 4.0509 4.1562 -4.6618 46 1 5.3498 1.7263 -7.2292 47 1 6.7758 2.4014 -6.4051 48 1 6.1712 0.7877 -5.9593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -74.052085 kcal Electronic energy + Delta-G solvation = -28276.593191 eV Core-core repulsion = 24457.339570 eV Total energy + Delta-G solvation = -3819.253622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55967 -38.52715 -38.44665 -37.27761 -37.17471 -35.85440 -34.20340 -32.31453 -32.09792 -29.03690 -28.94178 -27.55765 -25.98123 -25.60003 -24.37106 -23.93960 -22.65307 -20.87146 -20.19336 -19.04370 -18.52462 -18.45842 -17.33635 -17.17911 -16.72227 -16.64002 -16.17128 -15.96272 -15.80320 -15.62938 -15.53114 -15.01736 -14.80780 -14.34257 -14.19746 -13.98060 -13.79523 -13.72747 -13.46967 -13.42492 -13.37619 -13.35036 -13.14473 -13.06880 -12.74475 -12.70155 -12.62312 -12.55576 -12.23641 -12.22315 -12.03068 -11.68546 -11.52313 -11.13902 -10.98341 -10.54217 -10.39908 -10.18212 -9.99969 -9.52255 -8.17757 -6.27445 -0.83778 -0.23873 0.24411 1.39121 1.41444 1.52643 1.71833 2.41318 2.45032 2.46219 3.08152 3.15019 3.38206 3.49830 3.67259 3.75991 3.94202 4.06025 4.17365 4.26702 4.29209 4.41335 4.43816 4.46268 4.48478 4.50427 4.71035 4.72177 4.77889 4.83639 4.86536 4.91058 4.92892 4.96326 4.98105 5.07997 5.23580 5.30104 5.37269 5.41226 5.46672 5.47121 5.52214 5.74538 5.80557 5.85994 5.86615 6.15298 6.29188 6.87067 7.40342 8.94736 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.002901 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.760840 B = 9648.221539 C =10644.839903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 H 0.044 0.956 4 C 0.033 3.967 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.035 3.965 16 C -0.003 4.003 17 C -0.127 4.127 18 C -0.063 4.063 19 C -0.134 4.134 20 C -0.036 4.036 21 C -0.680 4.680 22 S 2.680 3.320 23 O -0.984 6.984 24 O -0.988 6.988 25 N -1.000 6.000 26 C 0.075 3.925 27 C 0.070 3.930 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.042 0.958 31 H -0.003 1.003 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.080 0.920 35 H 0.011 0.989 36 H 0.340 0.660 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.161 0.839 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 10.363 -32.431 34.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 H 0.063 0.937 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.189 1.189 13 C -0.060 4.060 14 N -0.316 5.316 15 C -0.093 4.093 16 C -0.005 4.005 17 C -0.146 4.146 18 C -0.080 4.080 19 C -0.152 4.152 20 C -0.054 4.054 21 C -0.770 4.770 22 S 2.773 3.227 23 O -0.973 6.973 24 O -0.978 6.978 25 N -0.842 5.842 26 C -0.069 4.069 27 C -0.074 4.074 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.001 0.999 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.030 0.970 36 H 0.160 0.840 37 H 0.130 0.870 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.188 0.812 42 H 0.178 0.822 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.125 0.875 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.237 9.716 -31.474 32.940 hybrid contribution 0.719 0.050 0.859 1.121 sum 0.957 9.765 -30.615 32.149 Atomic orbital electron populations 1.21463 0.93862 1.00836 1.00602 1.21041 0.97469 0.98116 0.93019 0.93715 1.19009 0.93957 0.94978 0.92513 1.21614 1.34653 1.08615 0.92006 0.92122 1.25999 0.95140 0.96186 1.02737 1.70111 1.40163 1.23006 1.24352 0.85438 0.78136 0.79139 0.78288 1.19517 1.20737 1.18895 1.22018 0.96418 0.98175 0.89410 1.60686 1.64203 1.05993 1.00681 1.21767 1.01357 0.98574 0.87627 1.19390 0.94306 0.92627 0.94160 1.21463 0.95649 1.01476 0.96020 1.21924 0.99493 0.92475 0.94156 1.21753 0.93703 0.98648 1.01140 1.21202 0.97818 0.95604 0.90818 1.30518 1.22446 1.09011 1.14993 1.02104 0.74026 0.72751 0.73796 1.93579 1.84139 1.70877 1.48744 1.93525 1.74894 1.43216 1.86154 1.56992 1.54915 1.17938 1.54386 1.21919 1.03425 0.76749 1.04820 1.21955 0.95510 0.99304 0.90594 0.91712 0.93797 0.93931 0.98459 0.99947 0.92853 0.90159 0.97048 0.84011 0.87006 0.92765 0.83595 0.81661 0.81248 0.82183 0.91923 0.86677 0.90695 0.89825 0.87510 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 8.88 71.98 0.64 -4.05 16 2 C -0.08 -3.69 2.53 -10.79 -0.03 -3.72 16 3 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.90 4.45 29.85 0.13 2.04 16 5 C -0.53 -32.15 8.41 25.60 0.22 -31.93 16 6 H 0.06 3.55 7.06 -2.91 -0.02 3.53 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -59.79 13.29 21.45 0.28 -59.50 16 9 Si 0.97 46.63 29.54 68.60 2.03 48.66 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.07 2.89 5.07 86.31 0.44 3.33 16 14 N -0.68 -25.01 5.91 -517.92 -3.06 -28.07 16 15 C 0.04 1.09 5.22 85.55 0.45 1.54 16 16 C 0.00 -0.07 5.34 -19.87 -0.11 -0.18 16 17 C -0.13 -2.47 9.67 22.27 0.22 -2.26 16 18 C -0.06 -0.82 10.05 22.27 0.22 -0.60 16 19 C -0.13 -1.54 10.05 22.27 0.22 -1.31 16 20 C -0.04 -0.54 9.56 22.27 0.21 -0.33 16 21 C -0.68 -16.03 5.78 22.27 0.13 -15.90 16 22 S 2.68 73.81 4.56 -56.49 -0.26 73.56 16 23 O -0.98 -34.01 14.86 -128.00 -1.90 -35.91 16 24 O -0.99 -33.31 14.36 -128.00 -1.84 -35.15 16 25 N -1.00 -16.90 2.62 -562.70 -1.48 -18.37 16 26 C 0.07 0.88 10.14 127.77 1.30 2.18 16 27 C 0.07 0.79 10.70 127.77 1.37 2.16 16 28 H 0.06 2.45 7.72 -2.39 -0.02 2.43 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.88 6.95 -2.38 -0.02 1.86 16 31 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.08 3.18 8.13 -2.39 -0.02 3.17 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.34 13.19 6.23 -89.70 -0.56 12.64 16 37 H 0.11 3.03 8.01 -2.38 -0.02 3.01 16 38 H 0.05 1.88 5.43 -2.39 -0.01 1.86 16 39 H 0.15 2.41 8.04 -2.91 -0.02 2.38 16 40 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.16 1.37 7.12 -2.91 -0.02 1.34 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 0.40 8.11 -2.39 -0.02 0.38 16 45 H 0.07 0.99 7.47 -2.39 -0.02 0.97 16 46 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.11 0.64 8.07 -2.39 -0.02 0.62 16 48 H 0.07 1.01 7.07 -2.39 -0.02 1.00 16 Total: -1.00 -83.47 394.59 0.03 -83.44 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.38 Total: 20.14 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 5.87 Total: -48.79 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -4.25 Total: -105.95 kcal Atomic # 8 Polarization: -67.32 SS G_CDS: -3.74 Total: -71.06 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 73.81 SS G_CDS: -0.26 Total: 73.56 kcal Total: -83.47 0.03 -83.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.388 kcal (2) G-P(sol) polarization free energy of solvation -83.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds