Wall clock time and date at job start Sat Apr 11 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65595 * 119.99876 * 2 1 4 4 O 1.42105 * 106.40149 * 178.54167 * 3 2 1 5 5 O 1.42098 * 106.40317 * 311.46040 * 3 2 1 6 6 C 1.76204 * 107.21987 * 65.00402 * 3 2 1 7 7 C 1.38233 * 119.99533 * 269.72685 * 6 3 2 8 8 C 1.38239 * 119.99982 * 179.76851 * 7 6 3 9 9 C 1.38238 * 119.99660 * 0.48019 * 8 7 6 10 10 C 1.50697 * 119.99908 * 179.77046 * 9 8 7 11 11 H 1.08999 * 109.47001 * 200.01921 * 10 9 8 12 12 C 1.53008 * 109.47080 * 80.02439 * 10 9 8 13 13 N 1.46899 * 109.47556 * 320.02452 * 10 9 8 14 14 C 1.46892 * 111.00263 * 205.00086 * 13 10 9 15 15 C 1.52999 * 109.47344 * 179.97438 * 14 13 10 16 16 H 1.08999 * 109.47053 * 304.99833 * 15 14 13 17 17 C 1.53001 * 109.47016 * 65.00098 * 15 14 13 18 18 C 1.52999 * 109.47286 * 184.99794 * 15 14 13 19 19 C 1.50701 * 109.46898 * 174.99936 * 18 15 14 20 20 H 1.07995 * 120.00590 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99544 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99733 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00303 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47368 * 89.99698 * 23 21 19 25 25 H 1.48501 * 109.47314 * 209.99823 * 23 21 19 26 26 H 1.48501 * 109.46893 * 330.00004 * 23 21 19 27 27 C 1.38237 * 120.00148 * 359.79280 * 9 8 7 28 28 C 1.38226 * 120.00179 * 89.99674 * 6 3 2 29 29 H 1.08991 * 109.47084 * 59.99708 * 1 2 3 30 30 H 1.08996 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46985 * 300.00166 * 1 2 3 32 32 H 0.96997 * 120.00091 * 179.97438 * 2 1 3 33 33 H 1.08007 * 120.00465 * 359.97438 * 7 6 3 34 34 H 1.07998 * 120.00556 * 180.25132 * 8 7 6 35 35 H 1.09004 * 109.46846 * 300.00107 * 12 10 9 36 36 H 1.08999 * 109.47338 * 59.99368 * 12 10 9 37 37 H 1.08991 * 109.46962 * 180.02562 * 12 10 9 38 38 H 1.00905 * 110.99404 * 328.95043 * 13 10 9 39 39 H 1.09000 * 109.46928 * 299.99907 * 14 13 10 40 40 H 1.09005 * 109.47375 * 59.99309 * 14 13 10 41 41 H 1.09001 * 109.47179 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.46628 * 299.99922 * 17 15 14 43 43 H 1.08999 * 109.47426 * 59.99964 * 17 15 14 44 44 H 1.09002 * 109.47107 * 295.00168 * 18 15 14 45 45 H 1.09003 * 109.47119 * 55.00272 * 18 15 14 46 46 H 0.96998 * 120.00014 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.00200 * 179.97438 * 27 9 8 48 48 H 1.08001 * 120.00418 * 0.02562 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6739 1.1003 0.0347 5 8 1.7120 2.2329 -1.0216 6 6 1.9379 2.2414 1.5254 7 6 0.8623 3.1049 1.6163 8 6 0.5808 3.7347 2.8143 9 6 1.3808 3.5085 3.9187 10 6 1.0770 4.1990 5.2233 11 1 1.9677 4.1966 5.8516 12 6 -0.0547 3.4598 5.9401 13 7 0.6671 5.5849 4.9601 14 6 0.9296 6.4416 6.1240 15 6 0.4913 7.8739 5.8123 16 1 0.9842 8.2147 4.9018 17 6 -1.0256 7.9117 5.6159 18 6 0.8778 8.7901 6.9751 19 6 0.5576 10.2185 6.6170 20 1 0.1216 10.4497 5.6564 21 6 0.8204 11.2301 7.5162 22 7 0.5404 12.4766 7.2040 23 14 1.5738 10.8303 9.1781 24 1 3.0545 10.8755 9.0741 25 1 1.1174 11.8258 10.1810 26 1 1.1486 9.4715 9.6003 27 6 2.4598 2.6493 3.8263 28 6 2.7382 2.0156 2.6296 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9501 -0.8400 0.0004 33 1 0.2398 3.2851 0.7522 34 1 -0.2620 4.4062 2.8864 35 1 -0.9454 3.4621 5.3117 36 1 0.2493 2.4315 6.1354 37 1 -0.2748 3.9595 6.8834 38 1 1.1224 5.9461 4.1352 39 1 0.3711 6.0691 6.9827 40 1 1.9957 6.4295 6.3511 41 1 -1.3379 8.9320 5.3933 42 1 -1.3010 7.2589 4.7874 43 1 -1.5185 7.5709 6.5263 44 1 0.3170 8.5041 7.8649 45 1 1.9456 8.6957 7.1726 46 1 0.7256 13.1884 7.8364 47 1 3.0851 2.4730 4.6889 48 1 3.5814 1.3447 2.5574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602520846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:29 Heat of formation + Delta-G solvation = -62.485217 kcal Electronic energy + Delta-G solvation = -26993.858850 eV Core-core repulsion = 23175.106805 eV Total energy + Delta-G solvation = -3818.752045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99331 -37.59962 -37.32664 -36.20736 -35.46740 -34.98623 -32.47345 -31.45700 -31.06287 -29.32245 -27.37632 -26.48556 -25.51909 -24.04989 -23.20478 -22.05536 -20.73496 -19.93682 -19.23039 -18.45125 -17.91526 -16.86022 -16.75221 -16.17936 -16.07379 -15.19024 -14.92699 -14.80322 -14.55594 -14.33730 -14.10384 -13.89102 -13.80390 -13.56444 -13.34297 -13.25837 -12.84607 -12.52081 -12.44885 -12.36967 -12.14245 -12.09726 -12.07202 -11.89651 -11.73546 -11.59889 -11.31166 -10.97954 -10.97059 -10.70809 -10.41731 -10.11951 -9.95382 -9.68672 -9.59660 -9.39876 -9.35305 -9.07768 -8.52901 -8.36996 -6.03130 -4.00172 -0.00759 0.45213 0.97877 2.59297 3.12440 3.29616 3.37365 3.40342 3.42082 3.96781 4.07633 4.33492 4.45283 4.49271 4.52738 4.56498 4.93844 4.99320 4.99591 5.13591 5.16044 5.24283 5.27645 5.30147 5.38468 5.50301 5.54574 5.60220 5.66432 5.72302 5.75578 5.86107 5.96796 6.06313 6.15604 6.27372 6.36957 6.40936 6.50466 6.54322 6.80816 6.98951 7.08787 7.16045 7.25823 7.41227 7.48589 7.81190 8.56021 9.02656 9.59559 11.10276 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.001969 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.588439 B =14217.789742 C =14400.831965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.122 6.122 3 S 2.698 3.302 4 O -0.961 6.961 5 O -0.955 6.955 6 C -0.682 4.682 7 C -0.023 4.023 8 C -0.120 4.120 9 C -0.026 4.026 10 C 0.113 3.887 11 H 0.055 0.945 12 C -0.134 4.134 13 N -0.679 5.679 14 C 0.061 3.939 15 C -0.074 4.074 16 H 0.060 0.940 17 C -0.124 4.124 18 C -0.009 4.009 19 C -0.513 4.513 20 H 0.074 0.926 21 C 0.064 3.936 22 N -0.904 5.904 23 Si 0.879 3.121 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.266 1.266 27 C -0.137 4.137 28 C -0.020 4.020 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.418 0.582 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.342 0.658 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.016 0.984 45 H 0.007 0.993 46 H 0.262 0.738 47 H 0.131 0.869 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -30.316 -11.093 32.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.787 3.213 4 O -0.951 6.951 5 O -0.945 6.945 6 C -0.770 4.770 7 C -0.042 4.042 8 C -0.139 4.139 9 C -0.027 4.027 10 C 0.003 3.997 11 H 0.073 0.927 12 C -0.192 4.192 13 N -0.311 5.311 14 C -0.067 4.067 15 C -0.092 4.092 16 H 0.078 0.922 17 C -0.181 4.181 18 C -0.047 4.047 19 C -0.551 4.551 20 H 0.092 0.908 21 C -0.137 4.137 22 N -0.544 5.544 23 Si 0.706 3.294 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.191 1.191 27 C -0.156 4.156 28 C -0.039 4.039 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.252 0.748 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.149 0.851 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.268 -29.765 -11.513 31.915 hybrid contribution 1.330 -0.190 1.743 2.201 sum 1.063 -29.956 -9.770 31.527 Atomic orbital electron populations 1.21515 0.78309 1.04329 1.02240 1.55328 1.16291 1.24384 1.92123 1.01778 0.72825 0.72688 0.73990 1.93597 1.30794 1.83430 1.87255 1.93597 1.78663 1.68312 1.53945 1.30776 1.07985 1.16721 1.21484 1.20987 0.93373 0.91610 0.98248 1.21298 1.00580 1.00180 0.91864 1.20438 0.92983 0.93773 0.95467 1.20614 0.97543 0.89666 0.91877 0.92734 1.21769 0.98042 0.98644 1.00710 1.60680 1.63033 1.00319 1.07062 1.22254 0.98000 0.94092 0.92388 1.21007 0.96785 0.91385 1.00068 0.92202 1.21593 0.95190 1.01402 0.99926 1.19612 0.95534 0.95648 0.93884 1.21121 1.41261 0.89195 1.03495 0.90812 1.25041 0.95356 0.94989 0.98275 1.69914 1.48834 0.99425 1.36187 0.86801 0.79690 0.78411 0.84472 1.20462 1.21461 1.19119 1.21203 0.97958 0.98251 0.98188 1.20837 0.96049 0.95854 0.91184 0.91170 0.89857 0.92022 0.74771 0.84166 0.83724 0.91674 0.92794 0.91786 0.83933 0.91297 0.95646 0.92209 0.93716 0.94216 0.96616 0.97439 0.92818 0.85103 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.14 59.85 0.67 0.98 16 2 N -1.12 -5.75 6.19 -16.63 -0.10 -5.85 16 3 S 2.70 23.49 5.74 -107.50 -0.62 22.87 16 4 O -0.96 -10.88 17.28 -57.17 -0.99 -11.87 16 5 O -0.96 -11.11 17.00 -57.17 -0.97 -12.09 16 6 C -0.68 -6.11 5.95 -39.59 -0.24 -6.34 16 7 C -0.02 -0.21 9.52 -39.58 -0.38 -0.58 16 8 C -0.12 -1.15 9.01 -39.58 -0.36 -1.50 16 9 C -0.03 -0.25 4.71 -104.62 -0.49 -0.74 16 10 C 0.11 1.17 2.82 -68.86 -0.19 0.98 16 11 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 12 C -0.13 -1.28 9.39 37.16 0.35 -0.93 16 13 N -0.68 -8.47 5.15 -107.95 -0.56 -9.03 16 14 C 0.06 0.93 4.87 -3.83 -0.02 0.91 16 15 C -0.07 -1.39 2.48 -90.62 -0.22 -1.62 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.12 -2.27 8.89 37.16 0.33 -1.94 16 18 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 19 C -0.51 -14.37 8.96 -34.44 -0.31 -14.68 16 20 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 21 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 22 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 23 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 27 C -0.14 -1.22 9.67 -39.58 -0.38 -1.61 16 28 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 29 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.42 1.30 8.96 -34.47 -0.31 0.99 16 33 H 0.14 1.06 7.61 -52.48 -0.40 0.66 16 34 H 0.15 1.34 7.72 -52.49 -0.41 0.93 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 38 H 0.34 4.27 7.99 -39.29 -0.31 3.96 16 39 H 0.07 1.04 7.44 -51.93 -0.39 0.66 16 40 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 42 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 45 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.13 0.95 8.04 -52.49 -0.42 0.52 16 48 H 0.14 0.99 7.62 -52.49 -0.40 0.59 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -34.98 400.03 -10.80 -45.78 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.88 Total: 0.39 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -1.82 Total: -26.17 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.11 Total: -41.98 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.96 Total: -23.96 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 23.49 SS G_CDS: -0.62 Total: 22.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.98 -10.80 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602520846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.705 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds