Wall clock time and date at job start Sat Apr 11 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65595 * 120.00061 * 2 1 4 4 O 1.42101 * 106.40429 * 311.45705 * 3 2 1 5 5 O 1.42095 * 106.40159 * 178.54231 * 3 2 1 6 6 C 1.76195 * 107.22212 * 65.00033 * 3 2 1 7 7 C 1.38258 * 120.00030 * 270.23825 * 6 3 2 8 8 C 1.38212 * 120.00085 * 180.27747 * 7 6 3 9 9 C 1.38260 * 120.00041 * 359.73665 * 8 7 6 10 10 C 1.38214 * 119.99662 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99514 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46969 * 160.02322 * 11 10 9 13 13 C 1.52999 * 109.46800 * 280.01679 * 11 10 9 14 14 N 1.46890 * 109.47293 * 40.01915 * 11 10 9 15 15 C 1.46904 * 110.99934 * 155.00029 * 14 11 10 16 16 C 1.53000 * 109.47467 * 180.02562 * 15 14 11 17 17 H 1.09003 * 109.46728 * 304.99945 * 16 15 14 18 18 C 1.52999 * 109.47050 * 64.99845 * 16 15 14 19 19 C 1.52992 * 109.47345 * 185.00008 * 16 15 14 20 20 C 1.50696 * 109.47214 * 174.99757 * 19 16 15 21 21 H 1.07997 * 119.99948 * 0.02562 * 20 19 16 22 22 C 1.37878 * 120.00022 * 179.97438 * 20 19 16 23 23 N 1.31514 * 120.00021 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47276 * 90.00393 * 24 22 20 26 26 H 1.48501 * 109.47134 * 209.99923 * 24 22 20 27 27 H 1.48492 * 109.47306 * 330.00054 * 24 22 20 28 28 C 1.38211 * 120.00141 * 89.99412 * 6 3 2 29 29 H 1.09000 * 109.47106 * 300.00144 * 1 2 3 30 30 H 1.08997 * 109.47249 * 59.99984 * 1 2 3 31 31 H 1.08999 * 109.47302 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99603 * 179.97438 * 2 1 3 33 33 H 1.08004 * 120.00376 * 359.97438 * 7 6 3 34 34 H 1.08001 * 120.00378 * 179.72174 * 8 7 6 35 35 H 1.07997 * 119.99889 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47548 * 300.00484 * 13 11 10 37 37 H 1.08997 * 109.47477 * 60.00367 * 13 11 10 38 38 H 1.08998 * 109.47072 * 180.02562 * 13 11 10 39 39 H 1.00898 * 111.00086 * 278.95223 * 14 11 10 40 40 H 1.09007 * 109.46967 * 300.00024 * 15 14 11 41 41 H 1.09006 * 109.47125 * 60.00024 * 15 14 11 42 42 H 1.08998 * 109.46906 * 60.00141 * 18 16 15 43 43 H 1.09001 * 109.46897 * 180.02562 * 18 16 15 44 44 H 1.09000 * 109.47375 * 300.00372 * 18 16 15 45 45 H 1.08997 * 109.47467 * 294.99957 * 19 16 15 46 46 H 1.08998 * 109.47259 * 54.99899 * 19 16 15 47 47 H 0.97004 * 120.00093 * 180.02562 * 23 22 20 48 48 H 1.08002 * 120.00200 * 0.02562 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7121 2.2329 -1.0216 5 8 3.6737 1.1002 0.0347 6 6 1.9379 2.2415 1.5253 7 6 0.8559 3.0971 1.6190 8 6 0.5807 3.7349 2.8139 9 6 1.3842 3.5131 3.9170 10 6 2.4630 2.6540 3.8246 11 6 3.3391 2.4127 5.0268 12 1 3.8913 1.4825 4.8931 13 6 4.3245 3.5730 5.1806 14 7 2.5031 2.3173 6.2308 15 6 3.1713 1.5286 7.2745 16 6 2.2718 1.4511 8.5097 17 1 2.0062 2.4587 8.8295 18 6 0.9999 0.6731 8.1664 19 6 3.0169 0.7373 9.6393 20 6 2.1798 0.7691 10.8920 21 1 1.2129 1.2499 10.8832 22 6 2.6480 0.1834 12.0491 23 7 3.8253 -0.4026 12.0596 24 14 1.6100 0.2222 13.6017 25 1 0.7360 -0.9777 13.6430 26 1 2.4988 0.2283 14.7913 27 1 0.7701 1.4468 13.6051 28 6 2.7380 2.0157 2.6294 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 0.0004 33 1 0.2285 3.2708 0.7573 34 1 -0.2619 4.4067 2.8860 35 1 1.1694 4.0118 4.8505 36 1 4.9449 3.6439 4.2872 37 1 3.7725 4.5033 5.3143 38 1 4.9585 3.3983 6.0499 39 1 2.2558 3.2338 6.5728 40 1 3.3640 0.5223 6.9021 41 1 4.1151 2.0043 7.5412 42 1 1.2655 -0.3345 7.8466 43 1 0.3589 0.6183 9.0463 44 1 0.4690 1.1816 7.3616 45 1 3.2044 -0.2978 9.3538 46 1 3.9659 1.2408 9.8237 47 1 4.1546 -0.8150 12.8736 48 1 3.5811 1.3446 2.5572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602530049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:50 Heat of formation + Delta-G solvation = -66.669117 kcal Electronic energy + Delta-G solvation = -27160.158756 eV Core-core repulsion = 23341.225284 eV Total energy + Delta-G solvation = -3818.933472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.85858 -37.54894 -37.27886 -36.14960 -35.37282 -34.89114 -32.47594 -31.50873 -30.92788 -28.93372 -26.77940 -26.39421 -25.33418 -24.04318 -23.37350 -22.26826 -21.22307 -19.71371 -19.19717 -18.03120 -17.73469 -16.72657 -16.38297 -16.27334 -15.77678 -15.29980 -14.97061 -14.76836 -14.55804 -14.26434 -14.15405 -14.01868 -13.59142 -13.41690 -13.22279 -12.80298 -12.62372 -12.54078 -12.44131 -12.37866 -12.25508 -12.12216 -11.99018 -11.71622 -11.56795 -11.39105 -11.06862 -11.00494 -10.86810 -10.81212 -10.32518 -10.30352 -10.02567 -9.75140 -9.57357 -9.24177 -9.07472 -8.95894 -8.35809 -8.23700 -6.00505 -4.01764 0.07970 0.60661 1.04958 2.67568 3.22104 3.30601 3.37124 3.39963 3.50334 3.98657 4.27812 4.45645 4.55152 4.58445 4.61812 4.76835 4.89849 5.02871 5.04946 5.10336 5.17363 5.32434 5.34195 5.35361 5.39430 5.52825 5.61756 5.67557 5.73162 5.80130 5.82793 5.97754 6.06747 6.11639 6.21793 6.36629 6.50064 6.50834 6.59770 6.62458 6.95380 7.12483 7.14058 7.26781 7.52316 7.65970 7.81373 7.99421 8.43174 9.04587 9.61769 11.10990 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.002039 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.196550 B =13725.601675 C =13908.161163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.121 6.121 3 S 2.698 3.302 4 O -0.959 6.959 5 O -0.960 6.960 6 C -0.677 4.677 7 C -0.031 4.031 8 C -0.140 4.140 9 C -0.039 4.039 10 C -0.078 4.078 11 C 0.117 3.883 12 H 0.089 0.911 13 C -0.179 4.179 14 N -0.680 5.680 15 C 0.064 3.936 16 C -0.082 4.082 17 H 0.053 0.947 18 C -0.122 4.122 19 C 0.027 3.973 20 C -0.513 4.513 21 H 0.056 0.944 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.890 3.110 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 C -0.017 4.017 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.419 0.581 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.338 0.662 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.016 0.984 46 H 0.012 0.988 47 H 0.260 0.740 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 5.189 -25.128 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.949 6.949 5 O -0.950 6.950 6 C -0.765 4.765 7 C -0.050 4.050 8 C -0.159 4.159 9 C -0.058 4.058 10 C -0.080 4.080 11 C 0.006 3.994 12 H 0.107 0.893 13 C -0.238 4.238 14 N -0.310 5.310 15 C -0.065 4.065 16 C -0.101 4.101 17 H 0.071 0.929 18 C -0.180 4.180 19 C -0.010 4.010 20 C -0.551 4.551 21 H 0.074 0.926 22 C -0.146 4.146 23 N -0.536 5.536 24 Si 0.718 3.282 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 C -0.037 4.037 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.254 0.746 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.034 0.966 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.750 5.022 -25.906 27.007 hybrid contribution 0.042 0.287 2.089 2.109 sum -5.708 5.309 -23.817 25.060 Atomic orbital electron populations 1.21510 0.78347 1.04432 1.02070 1.55298 1.16291 1.24404 1.92060 1.01735 0.72833 0.72692 0.73969 1.93580 1.78792 1.68473 1.54089 1.93599 1.30783 1.83370 1.87243 1.30709 1.07767 1.16699 1.21281 1.20863 0.93628 0.92364 0.98177 1.21289 1.00609 1.01006 0.93016 1.21312 0.92243 0.94073 0.98162 1.20009 0.96672 0.96762 0.94531 1.20487 0.91216 0.98841 0.88814 0.89279 1.22501 1.00006 0.98614 1.02684 1.60661 1.43687 1.20718 1.05935 1.22208 0.95621 0.97090 0.91533 1.21194 0.95523 0.99614 0.93724 0.92853 1.21584 0.97535 0.98907 0.99934 1.19116 0.95056 0.95342 0.91510 1.21221 1.03444 1.35504 0.94946 0.92601 1.25024 0.95046 0.95568 0.98937 1.69964 1.18175 1.37480 1.28020 0.86629 0.80190 0.78389 0.82991 1.20708 1.21312 1.19940 1.20748 0.96319 0.95786 0.90823 0.91986 0.91334 0.89784 0.74644 0.84578 0.85109 0.85093 0.91958 0.92286 0.91628 0.84392 0.91435 0.95418 0.94188 0.92788 0.94036 0.96568 0.96926 0.93077 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.14 59.85 0.67 1.07 16 2 N -1.12 -7.19 6.19 -16.63 -0.10 -7.30 16 3 S 2.70 25.55 5.74 -107.50 -0.62 24.94 16 4 O -0.96 -11.28 17.01 -57.18 -0.97 -12.26 16 5 O -0.96 -11.73 17.28 -57.18 -0.99 -12.72 16 6 C -0.68 -6.62 5.95 -39.58 -0.24 -6.85 16 7 C -0.03 -0.28 9.52 -39.58 -0.38 -0.65 16 8 C -0.14 -1.23 10.05 -39.58 -0.40 -1.63 16 9 C -0.04 -0.39 9.32 -39.58 -0.37 -0.76 16 10 C -0.08 -0.84 4.96 -104.62 -0.52 -1.36 16 11 C 0.12 1.31 2.79 -68.87 -0.19 1.12 16 12 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 13 C -0.18 -1.82 9.14 37.16 0.34 -1.48 16 14 N -0.68 -8.78 5.16 -107.95 -0.56 -9.34 16 15 C 0.06 1.02 4.87 -3.82 -0.02 1.00 16 16 C -0.08 -1.59 2.48 -90.62 -0.22 -1.81 16 17 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 18 C -0.12 -2.28 8.89 37.16 0.33 -1.95 16 19 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 20 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 21 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 24 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 C -0.02 -0.18 9.15 -39.58 -0.36 -0.54 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.42 1.96 8.96 -34.47 -0.31 1.65 16 33 H 0.14 0.97 7.62 -52.48 -0.40 0.57 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.15 7.25 -52.49 -0.38 0.77 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 38 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 39 H 0.34 4.06 7.82 -39.29 -0.31 3.75 16 40 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 41 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 44 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.14 1.32 7.60 -52.49 -0.40 0.93 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -34.35 403.29 -11.19 -45.54 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.88 Total: 0.81 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -1.87 Total: -26.23 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.08 Total: -42.61 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.96 Total: -24.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 25.55 SS G_CDS: -0.62 Total: 24.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.35 -11.19 -45.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602530049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.126 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds