Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46895 * 2 1 4 4 C 1.50700 * 109.46983 * 240.00066 * 2 1 3 5 5 H 1.07992 * 120.00210 * 272.76238 * 4 2 1 6 6 C 1.37874 * 119.99679 * 92.76496 * 4 2 1 7 7 N 1.31521 * 119.99911 * 174.93957 * 6 4 2 8 8 Si 1.86803 * 120.00314 * 354.93915 * 6 4 2 9 9 H 1.48504 * 109.47052 * 84.01963 * 8 6 4 10 10 H 1.48503 * 109.47244 * 204.01750 * 8 6 4 11 11 H 1.48494 * 109.47000 * 324.01579 * 8 6 4 12 12 N 1.46494 * 109.46739 * 120.00025 * 2 1 3 13 13 C 1.46504 * 120.00297 * 60.00422 * 12 2 1 14 14 C 1.34779 * 120.00099 * 239.99847 * 12 2 1 15 15 O 1.21646 * 119.99866 * 1.98430 * 14 12 2 16 16 C 1.47078 * 120.00118 * 181.99041 * 14 12 2 17 17 C 1.39338 * 120.59259 * 128.56109 * 16 14 12 18 18 C 1.39468 * 118.96203 * 179.97438 * 17 16 14 19 19 C 1.35754 * 120.13150 * 0.02562 * 18 17 16 20 20 N 1.35434 * 121.22988 * 359.97438 * 19 18 17 21 21 C 1.46508 * 119.47032 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.47104 * 90.00107 * 21 20 19 23 23 C 1.38240 * 119.99784 * 269.72613 * 22 21 20 24 24 C 1.38233 * 119.99856 * 179.76701 * 23 22 21 25 25 C 1.38241 * 119.99728 * 0.50765 * 24 23 22 26 26 C 1.38227 * 120.00114 * 359.74529 * 25 24 23 27 27 C 1.38235 * 120.00365 * 359.97438 * 26 25 24 28 28 C 1.34656 * 121.05845 * 359.70209 * 20 19 18 29 29 O 1.21882 * 120.10347 * 180.29125 * 28 20 19 30 30 H 1.08996 * 109.47095 * 295.50455 * 1 2 3 31 31 H 1.09006 * 109.46982 * 55.50324 * 1 2 3 32 32 H 1.08992 * 109.46928 * 175.50743 * 1 2 3 33 33 H 0.96997 * 119.99864 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.46747 * 293.02641 * 13 12 2 35 35 H 1.08991 * 109.47313 * 173.02102 * 13 12 2 36 36 H 1.08999 * 109.46705 * 53.01984 * 13 12 2 37 37 H 1.08001 * 120.51909 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.93685 * 180.02562 * 18 17 16 39 39 H 1.08000 * 119.39016 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.47139 * 209.99983 * 21 20 19 41 41 H 1.08995 * 109.47109 * 329.99601 * 21 20 19 42 42 H 1.07999 * 119.99769 * 359.97438 * 23 22 21 43 43 H 1.08001 * 120.00223 * 180.22770 * 24 23 22 44 44 H 1.08002 * 119.99489 * 179.72380 * 25 24 23 45 45 H 1.08008 * 120.00211 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00667 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1699 -1.7815 -1.2173 6 6 2.3164 0.0072 -2.3730 7 7 2.8482 -0.5965 -3.4135 8 14 1.9460 1.8367 -2.4433 9 1 3.0700 2.5931 -1.8351 10 1 1.7773 2.2537 -3.8586 11 1 0.6962 2.1179 -1.6922 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0834 15 8 3.0573 1.1390 1.9095 16 6 3.3194 -0.7411 3.2617 17 6 4.6786 -0.6984 3.5654 18 6 5.1408 -1.3794 4.6914 19 6 4.2730 -2.0709 5.4734 20 7 2.9506 -2.1168 5.1844 21 6 2.0484 -2.8744 6.0553 22 6 1.5260 -1.9725 7.1438 23 6 2.2095 -1.8664 8.3408 24 6 1.7329 -1.0355 9.3374 25 6 0.5673 -0.3186 9.1410 26 6 -0.1188 -0.4287 7.9461 27 6 0.3608 -1.2552 6.9473 28 6 2.4509 -1.4720 4.1131 29 8 1.2571 -1.5207 3.8723 30 1 -0.3633 0.4425 0.9275 31 1 -0.3633 0.5821 -0.8470 32 1 -0.3633 -1.0244 -0.0805 33 1 3.0484 -0.0916 -4.2171 34 1 0.5937 -2.1714 1.6160 35 1 2.2134 -2.4685 2.2915 36 1 1.9229 -2.6832 0.5487 37 1 5.3634 -0.1460 2.9391 38 1 6.1911 -1.3565 4.9417 39 1 4.6438 -2.5935 6.3428 40 1 1.2132 -3.2570 5.4685 41 1 2.5900 -3.7078 6.5026 42 1 3.1174 -2.4302 8.4959 43 1 2.2688 -0.9497 10.2712 44 1 0.1927 0.3272 9.9214 45 1 -1.0297 0.1310 7.7928 46 1 -0.1755 -1.3416 6.0138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = 8.781961 kcal Electronic energy + Delta-G solvation = -29762.922200 eV Core-core repulsion = 25811.816581 eV Total energy + Delta-G solvation = -3951.105619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66974 -39.48822 -38.65615 -37.02267 -35.31095 -34.81220 -32.53329 -31.75088 -31.20229 -30.56343 -29.52151 -27.08135 -26.01238 -25.19124 -24.71941 -23.10323 -22.78434 -21.68944 -21.02839 -18.82589 -17.67013 -17.56377 -17.16660 -16.91073 -16.46816 -16.04951 -15.65886 -15.40014 -15.33313 -14.98728 -14.59077 -14.12804 -13.94836 -13.71718 -13.50037 -13.03909 -12.92834 -12.69756 -12.58485 -12.40826 -12.32103 -12.26585 -12.09501 -11.97204 -11.50133 -11.48136 -11.30272 -11.09552 -10.98364 -10.48905 -10.22927 -10.13789 -9.92363 -9.72210 -9.24448 -9.21075 -9.14263 -8.97192 -8.55842 -7.97603 -7.46178 -6.09266 -4.10008 0.56571 0.91482 1.11121 1.83620 2.47432 3.23780 3.37420 3.44061 3.50198 3.53056 3.73619 4.06164 4.29055 4.31978 4.37801 4.46064 4.65268 4.69070 4.84753 4.90151 4.93375 5.11710 5.12929 5.22452 5.24330 5.33721 5.35087 5.63424 5.75333 5.79139 5.92342 5.92429 6.11277 6.15595 6.22818 6.26279 6.36663 6.39060 6.45583 6.56012 6.60756 6.67820 6.72144 6.90961 7.06254 7.22608 7.61598 7.75002 7.99166 8.27216 8.61958 8.92875 9.06322 9.54173 11.02857 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.003082 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.779524 B = 9082.699071 C = 9599.966112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.227 3.773 3 H 0.061 0.939 4 C -0.523 4.523 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.894 5.894 8 Si 0.870 3.130 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.567 5.567 13 C 0.100 3.900 14 C 0.570 3.430 15 O -0.559 6.559 16 C -0.242 4.242 17 C 0.028 3.972 18 C -0.229 4.229 19 C 0.140 3.860 20 N -0.490 5.490 21 C 0.132 3.868 22 C -0.117 4.117 23 C -0.104 4.104 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.087 4.087 28 C 0.528 3.472 29 O -0.527 6.527 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -6.736 27.326 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.561 4.561 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.531 5.531 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.295 5.295 13 C -0.044 4.044 14 C 0.356 3.644 15 O -0.440 6.440 16 C -0.249 4.249 17 C 0.006 3.994 18 C -0.252 4.252 19 C 0.012 3.988 20 N -0.200 5.200 21 C 0.011 3.989 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.105 4.105 28 C 0.329 3.671 29 O -0.407 6.407 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.902 -6.186 26.829 27.547 hybrid contribution 0.036 0.859 -0.058 0.862 sum 0.938 -5.327 26.770 27.311 Atomic orbital electron populations 1.22254 0.98409 1.00899 0.99228 1.19200 0.90786 0.94631 0.82756 0.92122 1.21129 1.44566 0.96162 0.94276 0.90378 1.24917 0.93607 0.98294 0.95586 1.69903 1.41911 1.36787 1.04540 0.86980 0.80320 0.86002 0.76978 1.19595 1.21382 1.18497 1.47995 1.47560 1.11929 1.22014 1.21636 1.00183 0.82612 0.99931 1.17435 0.79177 0.86082 0.81699 1.90738 1.60766 1.15694 1.76773 1.21234 0.94740 1.07771 1.01171 1.21870 0.94188 0.90175 0.93208 1.20582 1.00632 1.05524 0.98507 1.21986 0.82695 0.95897 0.98251 1.45573 1.07565 1.42959 1.23951 1.20873 0.95348 0.92393 0.90257 1.19958 0.96588 1.00162 0.95040 1.21016 0.99289 0.98853 0.93147 1.21111 0.96784 0.97342 0.99196 1.21244 0.95379 0.98933 0.97445 1.21247 1.00332 0.98828 0.93620 1.21338 0.95358 0.94589 0.99225 1.16903 0.89137 0.80492 0.80528 1.90952 1.15034 1.62756 1.71980 0.95342 0.92568 0.93172 0.92493 0.92603 0.92852 0.92181 0.84008 0.83265 0.82224 0.87019 0.88167 0.86071 0.85928 0.86005 0.85780 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.87 37.16 0.33 -3.18 16 2 C 0.23 5.96 2.22 -69.08 -0.15 5.80 16 3 H 0.06 1.73 4.61 -51.93 -0.24 1.49 16 4 C -0.52 -15.12 8.82 -34.44 -0.30 -15.42 16 5 H 0.08 2.38 6.78 -52.49 -0.36 2.03 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 7 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 8 Si 0.87 22.72 26.38 -169.99 -4.48 18.23 16 9 H -0.27 -7.21 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.53 5.98 56.52 0.34 -6.19 16 12 N -0.57 -13.47 2.73 -176.66 -0.48 -13.95 16 13 C 0.10 2.03 8.05 59.85 0.48 2.51 16 14 C 0.57 13.27 6.92 -12.67 -0.09 13.18 16 15 O -0.56 -14.82 16.39 5.24 0.09 -14.73 16 16 C -0.24 -4.34 4.90 -104.51 -0.51 -4.85 16 17 C 0.03 0.39 9.87 -38.71 -0.38 0.01 16 18 C -0.23 -2.11 9.99 -40.01 -0.40 -2.51 16 19 C 0.14 1.11 10.25 -16.85 -0.17 0.94 16 20 N -0.49 -5.33 2.56 -120.63 -0.31 -5.64 16 21 C 0.13 1.10 5.44 -5.19 -0.03 1.08 16 22 C -0.12 -1.08 5.46 -104.62 -0.57 -1.65 16 23 C -0.10 -0.78 9.70 -39.58 -0.38 -1.17 16 24 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 27 C -0.09 -0.95 9.68 -39.58 -0.38 -1.34 16 28 C 0.53 8.38 5.85 -14.92 -0.09 8.29 16 29 O -0.53 -9.56 12.78 5.03 0.06 -9.49 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.31 6.53 -51.93 -0.34 0.97 16 32 H 0.05 1.11 7.55 -51.93 -0.39 0.72 16 33 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.06 1.11 7.34 -51.93 -0.38 0.72 16 35 H 0.05 0.97 4.48 -51.93 -0.23 0.74 16 36 H 0.06 1.25 6.76 -51.93 -0.35 0.90 16 37 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.16 0.52 8.02 -52.49 -0.42 0.10 16 40 H 0.11 1.06 7.33 -51.93 -0.38 0.68 16 41 H 0.10 0.46 7.94 -51.93 -0.41 0.05 16 42 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.13 1.65 7.48 -52.49 -0.39 1.26 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -37.75 376.22 -8.68 -46.43 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.06 Total: 0.61 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.94 Total: -0.32 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.02 Total: -46.40 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.15 Total: -24.22 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.48 Total: 18.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.75 -8.68 -46.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.212 kcal (2) G-P(sol) polarization free energy of solvation -37.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds